Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002594

Physical Location & Seq

Genomic Coordinates Reverse (-)

3280487 .. 3282553

Gene Structure 2067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCTGAATTTATGGAACCAAATCTTGTATCCAATTTTGATGATGAGAAGAGCAATTCTGTCGACACAAGATCGATTTTTCAGATGGGTTTTCCTCTGGAGAGCGAAGAGATCGTTAGAGAGATGATTGAGAAAGAGAGACAACACTCACCGAGAGATGATTACCTCAAGAGACTGAGAAACGGAGATTTGGATTTCAATGTCAGAATCCAAGCCCTTGGTTGGATTTGGAAGGCCTGTGAGGAACTTCAATTTGGACCATTGTGTATATGTCTAGCAATGAACTACTTGGATCGTTTCTTATCTGTTCATGACTTACCTAGTGGAAAAGCTTGGACTGTACAATTGTTGGCTGTTGCTTGTTTATCATTGGCAGCTAAAATAGAGGAAACTAATGTTCCAGAGTTAATGCAGCTGCAGGTTGGAGCTCCCATGTTCGTGTTTGAGGCTAAATCAGTTCAAAGGATGGAACTTTTGGTGTTGAACGTATTGAGATGGAGGTTACGGGCAGTGACACCGTGCTCTTACGTTAGATACTTCCTGAGTAAGATCAATGGCTATGATCAAGAACCACATAGCAGATTGGTAACTAGATCACTACAAGTGATAGCCAGCACAACCAAAGGTATTGACTTCTTGGAGTTTAGAGCTTCAGAGATTGCTGCTGCAGTTGCTCTTTCTGTTTCTGGAGAACACTTTGACAAATTCTCCTTCTCTTCTTCCTTCTCAAGCCTTGAAAAGGAGAGAGTGAAGAAGATTGGTGAAATGATAGAGAGAGACGGATCAAGTTCAAGTTCACAAACACCAAATAATACAGTCTTACAATTTAAGAGTCGTCGTTATTCTCATTCTCTTTCTACTGCTTCTGTTTCCTCCTCCCTCACTTCTCTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010374 GO:0010440 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

298

Amino Acids

33.78

Weight (kDa)

6.03

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	37 - 169	8.4e-31	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22490 AT2G22490 AT5G10440 AT5G10440 AT5G65420 AT5G65420 AT5G65420 AT5G65420
fragaria_vesca	FvH4_1g19970 FvH4_5g35800
malus_domestica	MD01G1037500.v1.1 MD08G1193300.v1.1 MD15G1315400.v1.1 MD15G1381900.v1.1
prunus_persica	Prupe.1G527900_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1
pyrus_communis	pycom01g06540 pycom15g27860
rosa_chinensis	RchiOBHm_Chr2g0111911 RchiOBHm_Chr7g0237481
rosa_laevigata	RLG00000000999 RLG00000017937
rosa_multiflora	Rmu_sc0002923.1_g000002 Rmu_sc0006833.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132000 Rroxscaffold_3G00224140
rosa_rugosa	Rorug02G0177000 Rorug07G0303700
rosa_samantha	Rh2AG229400 Rh2BG242100 Rh2BG242200 Rh2CG233500 Rh2DG237100 Rh7BG430900 Rh7CG478300 Rh7DG447600
rosa_wichuraiana	Rw2G017750 Rw7G038150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	409
AccI	GTMKAC	1 cut(s)	63
AclWI	GGATC	2 cut(s)	300, 790
AcsI	RAATTY	2 cut(s)	8, 704
AcuI	CTGAAG	1 cut(s)	636
AfaI	GTAC	1 cut(s)	342
AfiI	CCNNNNNNNGG	2 cut(s)	222, 739
AgsI	TTSAA	6 cut(s)	199, 251, 461, 484, 737, 792
AjuI	GAANNNNNNNTTGG	2 cut(s)	237, 269
AluBI	AGCT	5 cut(s)	332, 377, 415, 428, 650
AluI	AGCT	5 cut(s)	332, 377, 415, 428, 650
Alw21I	GWGCWC	2 cut(s)	430, 524
Alw26I	GTCTC	3 cut(s)	133, 166, 771
AlwI	GGATC	2 cut(s)	300, 790
AoxI	GGCC	1 cut(s)	234
ApeKI	GCWGC	5 cut(s)	374, 412, 415, 662, 665
ApoI	RAATTY	2 cut(s)	8, 704
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	141, 773
AvaII	GGWCC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	430
Bbv12I	GWGCWC	2 cut(s)	430, 524
BbvI	GCAGC	5 cut(s)	386, 402, 424, 649, 652
BccI	CCATC	3 cut(s)	79, 460, 489
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciVI	GTATCC	1 cut(s)	40
BclI	TGATCA	1 cut(s)	562
BcoDI	GTCTC	3 cut(s)	133, 166, 771
BfaI	CTAG	3 cut(s)	275, 321, 591
BfmI	CTRYAG	2 cut(s)	416, 666
BfuAI	ACCTGC	1 cut(s)	409
BfuI	GTATCC	1 cut(s)	40
BisI	GCNGC	5 cut(s)	375, 413, 416, 663, 666
BlsI	GCNGC	5 cut(s)	376, 414, 417, 664, 667
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	18
BpmI	CTGGAG	2 cut(s)	119, 708
BpuEI	CTTGAG	2 cut(s)	152, 712
Bsa29I	ATCGAT	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	217
BsaXI	ACNNNNNCTCC	2 cut(s)	692, 722
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 739
Bse3DI	GCAATG	1 cut(s)	285
BseCI	ATCGAT	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	1 cut(s)	471
BseLI	CCNNNNNNNGG	2 cut(s)	222, 739
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	2 cut(s)	167, 533
BseRI	GAGGAG	1 cut(s)	865
BseXI	GCAGC	5 cut(s)	386, 402, 424, 649, 652
BshFI	GGCC	1 cut(s)	236
BshVI	ATCGAT	1 cut(s)	74
BsiHKAI	GWGCWC	2 cut(s)	430, 524
BslI	CCNNNNNNNGG	2 cut(s)	222, 739
BsmAI	GTCTC	3 cut(s)	133, 166, 771
BsmBI	CGTCTC	1 cut(s)	771
BsnI	GGCC	1 cut(s)	236
Bsp1286I	GDGCHC	2 cut(s)	430, 524
Bsp1407I	TGTACA	1 cut(s)	340
Bsp143I	GATC	7 cut(s)	71, 111, 292, 549, 562, 593, 782
BspANI	GGCC	1 cut(s)	236
BspCNI	CTCAG	2 cut(s)	168, 534
BspDI	ATCGAT	1 cut(s)	74
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	18
BspMAI	CTGCAG	2 cut(s)	420, 670
BspMI	ACCTGC	1 cut(s)	409
BspPI	GGATC	2 cut(s)	300, 790
BspQI	GCTCTTC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	285
BsrGI	TGTACA	1 cut(s)	340
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	7 cut(s)	71, 111, 292, 549, 562, 593, 782
BssT1I	CCWWGG	1 cut(s)	217
Bst4CI	ACNGT	3 cut(s)	340, 519, 817
Bst6I	CTCTTC	3 cut(s)	44, 102, 721
BstAUI	TGTACA	1 cut(s)	340
BstC8I	GCNNGC	1 cut(s)	613
BstDEI	CTNAG	2 cut(s)	176, 542
BstENI	CCTNNNNNAGG	1 cut(s)	737
BstF5I	GGATG	1 cut(s)	471
BstKTI	GATC	7 cut(s)	74, 114, 295, 552, 565, 596, 785
BstMAI	GTCTC	3 cut(s)	133, 166, 771
BstMBI	GATC	7 cut(s)	71, 111, 292, 549, 562, 593, 782
BstMWI	GCNNNNNNNGC	1 cut(s)	671
BstSFI	CTRYAG	2 cut(s)	416, 666
BstV1I	GCAGC	5 cut(s)	386, 402, 424, 649, 652
BstXI	CCANNNNNNTGG	1 cut(s)	218
Bsu15I	ATCGAT	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	236
BsuTUI	ATCGAT	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	471
BtsI	GCAGTG	1 cut(s)	516
BtsIMutI	CAGTG	1 cut(s)	516
BveI	ACCTGC	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	613
CciI	TCATGA	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	257
ClaI	ATCGAT	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	341
CviAII	CATG	2 cut(s)	311, 433
CviQI	GTAC	1 cut(s)	341
DdeI	CTNAG	2 cut(s)	176, 542
DpnI	GATC	7 cut(s)	73, 113, 294, 551, 564, 595, 784
DpnII	GATC	7 cut(s)	71, 111, 292, 549, 562, 593, 782
Eam1104I	CTCTTC	3 cut(s)	44, 102, 721
EarI	CTCTTC	3 cut(s)	44, 102, 721
Ecl136II	GAGCTC	1 cut(s)	428
Eco130I	CCWWGG	1 cut(s)	217
Eco147I	AGGCCT	1 cut(s)	236
Eco24I	GRGCYC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	257
Eco53kI	GAGCTC	1 cut(s)	428
Eco57I	CTGAAG	1 cut(s)	636
EcoICRI	GAGCTC	1 cut(s)	428
EcoNI	CCTNNNNNAGG	1 cut(s)	737
EcoT14I	CCWWGG	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	217
Esp3I	CGTCTC	1 cut(s)	771
FaeI	CATG	2 cut(s)	314, 436
FaiI	YATR	7 cut(s)	14, 269, 271, 312, 434, 561, 576
FatI	CATG	2 cut(s)	310, 432
FbaI	TGATCA	1 cut(s)	562
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	5 cut(s)	375, 413, 416, 663, 666
FokI	GGATG	1 cut(s)	478
FriOI	GRGCYC	1 cut(s)	430
Fsp4HI	GCNGC	5 cut(s)	375, 413, 416, 663, 666
FspBI	CTAG	3 cut(s)	275, 321, 591
GluI	GCNGC	5 cut(s)	375, 413, 416, 663, 666
GsuI	CTGGAG	2 cut(s)	119, 708
HaeIII	GGCC	1 cut(s)	236
Hin1II	CATG	2 cut(s)	314, 436
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	2 cut(s)	207, 832
HphI	GGTGA	2 cut(s)	141, 773
Hpy166II	GTNNAC	2 cut(s)	64, 797
Hpy188I	TCNGA	3 cut(s)	84, 206, 655
Hpy188III	TCNNGA	7 cut(s)	98, 169, 311, 401, 541, 566, 687
Hpy8I	GTNNAC	2 cut(s)	64, 797
Hpy99I	CGWCG	1 cut(s)	840
HpyAV	CCTTC	3 cut(s)	226, 721, 733
HpyCH4III	ACNGT	3 cut(s)	340, 519, 817
HpyCH4IV	ACGT	2 cut(s)	486, 528
HpyCH4V	TGCA	3 cut(s)	412, 418, 668
HpyF10VI	GCNNNNNNNGC	1 cut(s)	671
HpyF3I	CTNAG	2 cut(s)	176, 542
HpySE526I	ACGT	2 cut(s)	486, 528
Hsp92II	CATG	2 cut(s)	314, 436
Ksp22I	TGATCA	1 cut(s)	562
Kzo9I	GATC	7 cut(s)	71, 111, 292, 549, 562, 593, 782
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	2 cut(s)	425, 433
LpnPI	CCDG	7 cut(s)	83, 250, 404, 414, 554, 625, 672
Lsp1109I	GCAGC	5 cut(s)	386, 402, 424, 649, 652
MaeI	CTAG	3 cut(s)	275, 321, 591
MaeII	ACGT	2 cut(s)	486, 528
MaeIII	GTNAC	3 cut(s)	501, 511, 586
MalI	GATC	7 cut(s)	73, 113, 294, 551, 564, 595, 784
MboI	GATC	7 cut(s)	71, 111, 292, 549, 562, 593, 782
MboII	GAAGA	6 cut(s)	61, 119, 708, 711, 763, 766
MfeI	CAATTG	1 cut(s)	344
MhlI	GDGCHC	2 cut(s)	430, 524
MluCI	AATT	7 cut(s)	8, 34, 55, 251, 344, 704, 824
MlyI	GAGTC	1 cut(s)	841
MmeI	TCCRAC	2 cut(s)	203, 403
MnlI	CCTC	9 cut(s)	105, 176, 235, 379, 439, 492, 883, 886, 890
MseI	TTAA	3 cut(s)	407, 828, 895
MslI	CAYNNNNRTG	1 cut(s)	437
MspA1I	CMGCKG	1 cut(s)	415
MunI	CAATTG	1 cut(s)	344
MwoI	GCNNNNNNNGC	1 cut(s)	671
NdeII	GATC	7 cut(s)	71, 111, 292, 549, 562, 593, 782
NlaIII	CATG	2 cut(s)	314, 436
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	511
PagI	TCATGA	1 cut(s)	310
PceI	AGGCCT	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	207
PkrI	GCNGC	5 cut(s)	376, 414, 417, 664, 667
PleI	GAGTC	1 cut(s)	840
PpsI	GAGTC	1 cut(s)	840
Psp124BI	GAGCTC	1 cut(s)	430
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	257
PstI	CTGCAG	2 cut(s)	420, 670
PvuII	CAGCTG	1 cut(s)	415
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
RseI	CAYNNNNRTG	1 cut(s)	437
SacI	GAGCTC	1 cut(s)	430
SalI	GTCGAC	1 cut(s)	62
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	3 cut(s)	407, 828, 895
SatI	GCNGC	5 cut(s)	375, 413, 416, 663, 666
Sau3AI	GATC	7 cut(s)	71, 111, 292, 549, 562, 593, 782
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	841
SduI	GDGCHC	2 cut(s)	430, 524
SfcI	CTRYAG	2 cut(s)	416, 666
SinI	GGWCC	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	2 cut(s)	167, 727
SmoI	CTYRAG	2 cut(s)	167, 727
Sse9I	AATT	7 cut(s)	8, 34, 55, 251, 344, 704, 824
SseBI	AGGCCT	1 cut(s)	236
SspMI	CTAG	3 cut(s)	275, 321, 591
SstI	GAGCTC	1 cut(s)	430
StuI	AGGCCT	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	3 cut(s)	340, 519, 817
TaiI	ACGT	2 cut(s)	489, 531
TaqI	TCGA	2 cut(s)	63, 74
TasI	AATT	7 cut(s)	8, 34, 55, 251, 344, 704, 824
TatI	WGTACW	1 cut(s)	340
TfiI	GAWTC	1 cut(s)	207
Tru1I	TTAA	3 cut(s)	407, 828, 895
Tru9I	TTAA	3 cut(s)	407, 828, 895
TscAI	CASTG	1 cut(s)	516
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	5 cut(s)	374, 412, 415, 662, 665
Tsp45I	GTSAC	1 cut(s)	511
TspDTI	ATGAA	2 cut(s)	296, 299
TspGWI	ACGGA	2 cut(s)	198, 795
TspRI	CASTG	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	257
XagI	CCTNNNNNAGG	1 cut(s)	737
XapI	RAATTY	2 cut(s)	8, 704
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	3 cut(s)	275, 321, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.