Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002594

Physical Location & Seq

Genomic Coordinates Reverse (-)

24882904 .. 24885911

Gene Structure 3008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1193300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCACCCAGTTTTGACTGTGCGGTTTCAAGCCTGCTATGCGCAGAAGAAAACATTTTTGATATTGACGATTTTGGGTCTGAGGAGGCTCACAGAAATCATCGAAACAACAGTCGGAAGGGAGGGTTTTGTGATGATGGGGAAGAAGGGCTGCCATTGCAGAGTCAGAGTGATGAGTATTTGGGTTCAATGGTAGAAAAGGAATTTCACCACTTGCCTGCTTCTGATTACTTGATGAGGTTGCAAAGTGGGGACTTGGACCTTGCTGCTAGACAACAGGCTGTTGATTGGATTGGAAAGGCAAATGCACATTTCAGTTTTGGACCTCTATGTCAATACCTATCCATAAACTACTTGGATCGATTCCTTTCTGCGTATGAATTACCTAATGGCAAAGCTTGGACTATGCAATTGTTGGCTGTGGCATGCTTGTCCCTTGCTGCAAAAATGGAGGAGATCGATGTCCCAATCTCTCATGATTTACAGGTGGTAGAGTCAAAATTTGTGTTTGAGGCAAGAACAATTCAAAGGATGGAGCTTTTGGTGTTGAGCGCATTAAGATGGAGAATGCAAGCAGTTACCCCCTTCACATTCATAGATTCTTTCCTTCTCATGATCAATGATGATCAAACCAATCTCAAAACTTCAATCTTGAGATCATCCCACCTGATTGTGACCACTGCTAAGGGAATTGACTCGTTGGAATACAGGCCTTCAGAGGTGGCAGCAGCGGTAGCAATTTCTGTGGCAGGAGAGGCCAAAACATTAGACAATGAGAAAGCAATCTCTATGCTCATTCAACATGTACACTTAGTAAAGGAGAGAGTGGCAAAGTGTGTAAATTTGATTCATGATATGACATTAATGAGTGGGACCCCCATGAAGGAAGCTAGTGGGTCAGCCCAGAGTGGGACCCAGAGTCCAATAGGAGTGTTGGATGCTGGATGCTTCAGCTACAAAAGTGAGGAAACCACAGTTGGGTCATGTGTAAATTCCTTCCACAGTAGCTCAGATTCTAAAAGAAGGAAGCTGAACAGACCCTGTGAGGTGGGGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

353

Amino Acids

38.88

Weight (kDa)

5.24

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	63 - 190	2.7e-29	Cyclin, N-terminal domain
Cyclin_C	PF02984	193 - 290	3.4e-09	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22490 AT2G22490 AT5G10440 AT5G10440 AT5G65420 AT5G65420 AT5G65420 AT5G65420
fragaria_vesca	FvH4_1g19970 FvH4_5g35800
malus_domestica	MD01G1037500.v1.1 MD08G1193300.v1.1 MD15G1315400.v1.1 MD15G1381900.v1.1
prunus_persica	Prupe.1G527900_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1
pyrus_communis	pycom01g06540 pycom15g27860
rosa_chinensis	RchiOBHm_Chr2g0111911 RchiOBHm_Chr7g0237481
rosa_laevigata	RLG00000000999 RLG00000017937
rosa_multiflora	Rmu_sc0002923.1_g000002 Rmu_sc0006833.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132000 Rroxscaffold_3G00224140
rosa_rugosa	Rorug02G0177000 Rorug07G0303700
rosa_samantha	Rh2AG229400 Rh2BG242100 Rh2BG242200 Rh2CG233500 Rh2DG237100 Rh7BG430900 Rh7CG478300 Rh7DG447600
rosa_wichuraiana	Rw2G017750 Rw7G038150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	330
Acc16I	TGCGCA	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	2 cut(s)	23, 731
AclWI	GGATC	1 cut(s)	366
AcsI	RAATTY	4 cut(s)	203, 500, 841, 991
AcuI	CTGAAG	2 cut(s)	699, 934
AfaI	GTAC	1 cut(s)	807
AfiI	CCNNNNNNNGG	3 cut(s)	883, 909, 978
AflIII	ACRYGT	1 cut(s)	802
AgsI	TTSAA	5 cut(s)	30, 189, 527, 648, 800
AhdI	GACNNNNNGTC	1 cut(s)	918
AjuI	GAANNNNNNNTTGG	2 cut(s)	960, 992
AluBI	AGCT	6 cut(s)	398, 538, 890, 954, 1008, 1030
AluI	AGCT	6 cut(s)	398, 538, 890, 954, 1008, 1030
AlwI	GGATC	1 cut(s)	366
AlwNI	CAGNNNCTG	1 cut(s)	1041
AoxI	GGCC	2 cut(s)	710, 756
ApeKI	GCWGC	5 cut(s)	151, 266, 440, 725, 728
ApoI	RAATTY	4 cut(s)	203, 500, 841, 991
ArsI	GACNNNNNNTTYG	2 cut(s)	97, 129
AseI	ATTAAT	1 cut(s)	863
AspLEI	GCGC	2 cut(s)	44, 554
AspS9I	GGNCC	4 cut(s)	259, 323, 873, 912
AsuHPI	GGTGA	1 cut(s)	200
AvaII	GGWCC	4 cut(s)	259, 323, 873, 912
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	5 cut(s)	138, 253, 427, 737, 740
BccI	CCATC	3 cut(s)	131, 526, 555
BclI	TGATCA	2 cut(s)	615, 625
BfaI	CTAG	2 cut(s)	270, 891
BisI	GCNGC	5 cut(s)	152, 267, 441, 726, 729
BlsI	GCNGC	5 cut(s)	153, 268, 442, 727, 730
Bme18I	GGWCC	4 cut(s)	259, 323, 873, 912
BmeRI	GACNNNNNGTC	1 cut(s)	918
BmgT120I	GGNCC	4 cut(s)	259, 323, 873, 912
BmiI	GGNNCC	5 cut(s)	6, 874, 875, 913, 914
BmrI	ACTGGG	1 cut(s)	3
BmsI	GCATC	2 cut(s)	928, 935
BmuI	ACTGGG	1 cut(s)	3
Bpu10I	CCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	1 cut(s)	673
Bsa29I	ATCGAT	2 cut(s)	361, 459
Bsc4I	CCNNNNNNNGG	3 cut(s)	883, 909, 978
Bse1I	ACTGG	1 cut(s)	9
Bse3DI	GCAATG	1 cut(s)	155
BseCI	ATCGAT	2 cut(s)	361, 459
BseGI	GGATG	4 cut(s)	537, 659, 943, 950
BseLI	CCNNNNNNNGG	3 cut(s)	883, 909, 978
BseMI	GCAATG	1 cut(s)	155
BseMII	CTCAG	2 cut(s)	72, 1023
BseNI	ACTGG	1 cut(s)	9
BseRI	GAGGAG	2 cut(s)	98, 467
BseXI	GCAGC	5 cut(s)	138, 253, 427, 737, 740
BshFI	GGCC	2 cut(s)	712, 758
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	2 cut(s)	361, 459
BslFI	GGGAC	5 cut(s)	266, 418, 449, 886, 925
BslI	CCNNNNNNNGG	3 cut(s)	883, 909, 978
BsmFI	GGGAC	5 cut(s)	266, 418, 449, 886, 925
BsmI	GAATGC	1 cut(s)	573
BsnI	GGCC	2 cut(s)	712, 758
Bsp1407I	TGTACA	1 cut(s)	805
Bsp143I	GATC	5 cut(s)	358, 456, 615, 625, 656
BspACI	CCGC	2 cut(s)	23, 731
BspANI	GGCC	2 cut(s)	712, 758
BspCNI	CTCAG	2 cut(s)	73, 1022
BspDI	ATCGAT	2 cut(s)	361, 459
BspHI	TCATGA	3 cut(s)	475, 612, 850
BspLI	GGNNCC	5 cut(s)	6, 874, 875, 913, 914
BspPI	GGATC	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	155
BsrGI	TGTACA	1 cut(s)	805
BsrI	ACTGG	1 cut(s)	9
BssMI	GATC	5 cut(s)	358, 456, 615, 625, 656
Bst4CI	ACNGT	4 cut(s)	20, 113, 976, 1004
BstAUI	TGTACA	1 cut(s)	805
BstC8I	GCNNGC	4 cut(s)	35, 219, 427, 573
BstDEI	CTNAG	4 cut(s)	81, 684, 811, 1009
BstF5I	GGATG	4 cut(s)	537, 659, 943, 950
BstHHI	GCGC	2 cut(s)	44, 554
BstKTI	GATC	5 cut(s)	361, 459, 618, 628, 659
BstMBI	GATC	5 cut(s)	358, 456, 615, 625, 656
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 157, 734, 755
BstNSI	RCATGY	2 cut(s)	429, 806
BstV1I	GCAGC	5 cut(s)	138, 253, 427, 737, 740
Bsu15I	ATCGAT	2 cut(s)	361, 459
BsuRI	GGCC	2 cut(s)	712, 758
BsuTUI	ATCGAT	2 cut(s)	361, 459
BtsCI	GGATG	4 cut(s)	537, 659, 943, 950
BtsI	GCAGTG	1 cut(s)	678
BtsIMutI	CAGTG	1 cut(s)	678
Cac8I	GCNNGC	4 cut(s)	35, 219, 427, 573
CaiI	CAGNNNCTG	1 cut(s)	1041
CciI	TCATGA	3 cut(s)	475, 612, 850
CfoI	GCGC	2 cut(s)	44, 554
Cfr13I	GGNCC	4 cut(s)	259, 323, 873, 912
ClaI	ATCGAT	2 cut(s)	361, 459
Csp6I	GTAC	1 cut(s)	806
CspCI	CAANNNNNGTGG	2 cut(s)	726, 761
CviAII	CATG	7 cut(s)	426, 476, 613, 803, 851, 880, 984
CviQI	GTAC	1 cut(s)	806
DdeI	CTNAG	4 cut(s)	81, 684, 811, 1009
DpnI	GATC	5 cut(s)	360, 458, 617, 627, 658
DpnII	GATC	5 cut(s)	358, 456, 615, 625, 656
DrdI	GACNNNNNNGTC	1 cut(s)	330
DriI	GACNNNNNGTC	1 cut(s)	918
DseDI	GACNNNNNNGTC	1 cut(s)	330
Eam1105I	GACNNNNNGTC	1 cut(s)	918
Eco147I	AGGCCT	1 cut(s)	712
Eco47I	GGWCC	4 cut(s)	259, 323, 873, 912
Eco57I	CTGAAG	2 cut(s)	699, 934
EcoO109I	RGGNCCY	2 cut(s)	873, 912
FaeI	CATG	7 cut(s)	429, 479, 616, 806, 854, 883, 987
FaqI	GGGAC	5 cut(s)	266, 418, 449, 886, 925
FatI	CATG	7 cut(s)	425, 475, 612, 802, 850, 879, 983
FbaI	TGATCA	2 cut(s)	615, 625
Fnu4HI	GCNGC	5 cut(s)	152, 267, 441, 726, 729
FokI	GGATG	4 cut(s)	544, 646, 950, 957
Fsp4HI	GCNGC	5 cut(s)	152, 267, 441, 726, 729
FspBI	CTAG	2 cut(s)	270, 891
FspI	TGCGCA	1 cut(s)	43
GlaI	GCGC	2 cut(s)	43, 553
GluI	GCNGC	5 cut(s)	152, 267, 441, 726, 729
HaeIII	GGCC	2 cut(s)	712, 758
HhaI	GCGC	2 cut(s)	44, 554
Hin1II	CATG	7 cut(s)	429, 479, 616, 806, 854, 883, 987
Hin6I	GCGC	2 cut(s)	42, 552
HinP1I	GCGC	2 cut(s)	42, 552
HindIII	AAGCTT	1 cut(s)	396
HinfI	GANTC	8 cut(s)	163, 363, 494, 599, 695, 847, 919, 1013
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	808
Hpy188I	TCNGA	6 cut(s)	82, 117, 168, 226, 718, 1012
Hpy188III	TCNNGA	4 cut(s)	476, 613, 652, 851
Hpy8I	GTNNAC	1 cut(s)	808
HpyAV	CCTTC	8 cut(s)	112, 140, 595, 617, 723, 877, 1006, 1017
HpyCH4III	ACNGT	4 cut(s)	20, 113, 976, 1004
HpyCH4V	TGCA	6 cut(s)	160, 244, 308, 409, 443, 571
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 157, 734, 755
HpyF3I	CTNAG	4 cut(s)	81, 684, 811, 1009
Hsp92II	CATG	7 cut(s)	429, 479, 616, 806, 854, 883, 987
HspAI	GCGC	2 cut(s)	42, 552
KflI	GGGWCCC	2 cut(s)	873, 912
Ksp22I	TGATCA	2 cut(s)	615, 625
Kzo9I	GATC	5 cut(s)	358, 456, 615, 625, 656
LmnI	GCTCC	1 cut(s)	535
Lsp1109I	GCAGC	5 cut(s)	138, 253, 427, 737, 740
LweI	GCATC	2 cut(s)	928, 935
MaeI	CTAG	2 cut(s)	270, 891
MaeIII	GTNAC	2 cut(s)	577, 673
MalI	GATC	5 cut(s)	360, 458, 617, 627, 658
MboI	GATC	5 cut(s)	358, 456, 615, 625, 656
MboII	GAAGA	2 cut(s)	59, 155
MfeI	CAATTG	1 cut(s)	410
MluCI	AATT	9 cut(s)	203, 380, 410, 500, 522, 690, 738, 841, 991
MlyI	GAGTC	4 cut(s)	172, 503, 689, 928
MmeI	TCCRAC	3 cut(s)	95, 681, 915
MseI	TTAA	2 cut(s)	557, 863
MslI	CAYNNNNRTG	1 cut(s)	559
MspA1I	CMGCKG	1 cut(s)	731
MunI	CAATTG	1 cut(s)	410
Mva1269I	GAATGC	1 cut(s)	573
MwoI	GCNNNNNNNGC	4 cut(s)	39, 157, 734, 755
NdeII	GATC	5 cut(s)	358, 456, 615, 625, 656
NlaIII	CATG	7 cut(s)	429, 479, 616, 806, 854, 883, 987
NlaIV	GGNNCC	5 cut(s)	6, 874, 875, 913, 914
NmuCI	GTSAC	1 cut(s)	673
NsbI	TGCGCA	1 cut(s)	43
NspI	RCATGY	2 cut(s)	429, 806
PaeI	GCATGC	1 cut(s)	429
PagI	TCATGA	3 cut(s)	475, 612, 850
PceI	AGGCCT	1 cut(s)	712
PciI	ACATGT	1 cut(s)	802
PctI	GAATGC	1 cut(s)	573
PfeI	GAWTC	4 cut(s)	363, 599, 847, 1013
PkrI	GCNGC	5 cut(s)	153, 268, 442, 727, 730
PleI	GAGTC	4 cut(s)	171, 502, 689, 927
PpsI	GAGTC	4 cut(s)	171, 502, 689, 927
PpuMI	RGGWCCY	2 cut(s)	873, 912
PscI	ACATGT	1 cut(s)	802
PshBI	ATTAAT	1 cut(s)	863
Psp5II	RGGWCCY	2 cut(s)	873, 912
PspN4I	GGNNCC	5 cut(s)	6, 874, 875, 913, 914
PspPI	GGNCC	4 cut(s)	259, 323, 873, 912
PspPPI	RGGWCCY	2 cut(s)	873, 912
PstNI	CAGNNNCTG	1 cut(s)	1041
RsaI	GTAC	1 cut(s)	807
RsaNI	GTAC	1 cut(s)	806
RseI	CAYNNNNRTG	1 cut(s)	559
SaqAI	TTAA	2 cut(s)	557, 863
SatI	GCNGC	5 cut(s)	152, 267, 441, 726, 729
Sau3AI	GATC	5 cut(s)	358, 456, 615, 625, 656
Sau96I	GGNCC	4 cut(s)	259, 323, 873, 912
SchI	GAGTC	4 cut(s)	172, 503, 689, 928
SfaNI	GCATC	2 cut(s)	928, 935
SinI	GGWCC	4 cut(s)	259, 323, 873, 912
SmiMI	CAYNNNNRTG	1 cut(s)	559
SmlI	CTYRAG	1 cut(s)	652
SmoI	CTYRAG	1 cut(s)	652
SphI	GCATGC	1 cut(s)	429
Sse9I	AATT	9 cut(s)	203, 380, 410, 500, 522, 690, 738, 841, 991
SseBI	AGGCCT	1 cut(s)	712
SsiI	CCGC	2 cut(s)	23, 731
SspMI	CTAG	2 cut(s)	270, 891
StuI	AGGCCT	1 cut(s)	712
TaaI	ACNGT	4 cut(s)	20, 113, 976, 1004
TaqI	TCGA	3 cut(s)	103, 361, 459
TasI	AATT	9 cut(s)	203, 380, 410, 500, 522, 690, 738, 841, 991
TatI	WGTACW	1 cut(s)	805
TfiI	GAWTC	4 cut(s)	363, 599, 847, 1013
Tru1I	TTAA	2 cut(s)	557, 863
Tru9I	TTAA	2 cut(s)	557, 863
TscAI	CASTG	1 cut(s)	685
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	5 cut(s)	151, 266, 440, 725, 728
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	4 cut(s)	393, 583, 839, 896
TspRI	CASTG	1 cut(s)	685
VpaK11BI	GGWCC	4 cut(s)	259, 323, 873, 912
VspI	ATTAAT	1 cut(s)	863
XapI	RAATTY	4 cut(s)	203, 500, 841, 991
XceI	RCATGY	2 cut(s)	429, 806
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XspI	CTAG	2 cut(s)	270, 891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.