Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002594

Physical Location & Seq

Genomic Coordinates Reverse (-)

13025041 .. 13027447

Gene Structure 2407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1037500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGACAGACAGCTTTGACTCTGCCACCTCAAACCTTCTCTGTGCAGAAAACTCGAATACCTGCTTTGATGATCTTGATTCTAATGTCACAGATGACTTGGGTCACTTCCCATCAAATTCCCACAAAACCAATCAAGACCCCAATTTTGATCACAACCGTAGATCCAAATCCATGATAGATTTTTCCTCACATAGTGAAGAGTGGGTGAGTGAAATGGTTAAGAGGGAGAGTGAGCATTTGCCCAGACACGATTATCTGAGGAGACTTCGTTCTGGGGACTTAGAATTGAGCGCTAGAAGGGAGGCCTTTGATTGGATTTGGAAGGCTCATTCCCATTACAATTTTGGACCATTGTGTGTTTGGCTATCTATGAACTACTTGGATCGCTTCCTTTCGCTTTATGAATTGCCTAGAGGTAAAGCTTGGGCGGTGCAATTGCTAGCTGTGGCTTGTTTATCAATAGCAGCCAAAGTAGAGGAGACTAGTGTACCCCAGTCTGTGGATATACAGGTTGGAGATCCCAAGTTTGTGTTTGAAGCAAAAACTATACTAAGAATGGAGCTTCTTGTGATGAGCACCCTAAAATGGAGAATGCATGCTTGTAGTGCTTACTCTTTCATTGACTGCTTCCTTAGCAAGATAAGTGATGATCAATATCCGTTGCTATCGTCCATATGTAGATCAGAACAACTCATTTTGAGCACAATCAGAGGTATTGACTTCTTGGAATTCAGGCCTTCTGAAATCGCTGCAGCAGTCGCAATTTGTATTTCAGGAGAAATACAAGCGCAAGCAGTAGACATCGATAAGGCCATTTCTTGTTTTGAACATGTAGACAAGGAAAGAGTGTTGAAGTGTGTTGAACTGATCAAAGATTTGTCATTGATCAGTGGTTCCGCCAATCGGGGAAGCGCCTCAGGTCCATCGGTGCCCCAAAGTCCGGATGGGGTGTTGGATGCTGCATGCTTGAGCTATAAAAGTGATGAATTTATAGTTGGGTCAAGTGAAAATTCTTCACATAGTAGTCCAGACATTAAGAGGAGGAAACCAGACAATCAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010374 GO:0010440 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

355

Amino Acids

39.73

Weight (kDa)

5.25

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	70 - 198	9.8e-31	Cyclin, N-terminal domain
Cyclin_C	PF02984	203 - 294	8.4e-11	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22490 AT2G22490 AT5G10440 AT5G10440 AT5G65420 AT5G65420 AT5G65420 AT5G65420
fragaria_vesca	FvH4_1g19970 FvH4_5g35800
malus_domestica	MD01G1037500.v1.1 MD08G1193300.v1.1 MD15G1315400.v1.1 MD15G1381900.v1.1
prunus_persica	Prupe.1G527900_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1
pyrus_communis	pycom01g06540 pycom15g27860
rosa_chinensis	RchiOBHm_Chr2g0111911 RchiOBHm_Chr7g0237481
rosa_laevigata	RLG00000000999 RLG00000017937
rosa_multiflora	Rmu_sc0002923.1_g000002 Rmu_sc0006833.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132000 Rroxscaffold_3G00224140
rosa_rugosa	Rorug02G0177000 Rorug07G0303700
rosa_samantha	Rh2AG229400 Rh2BG242100 Rh2BG242200 Rh2CG233500 Rh2DG237100 Rh7BG430900 Rh7CG478300 Rh7DG447600
rosa_wichuraiana	Rw2G017750 Rw7G038150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	928
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccI	GTMKAC	2 cut(s)	798, 834
AccIII	TCCGGA	1 cut(s)	940
AciI	CCGC	2 cut(s)	428, 897
AclWI	GGATC	3 cut(s)	156, 390, 512
AcsI	RAATTY	4 cut(s)	115, 728, 986, 1009
AdeI	CACNNNGTG	1 cut(s)	194
AfaI	GTAC	1 cut(s)	489
AfeI	AGCGCT	1 cut(s)	292
AfiI	CCNNNNNNNGG	5 cut(s)	312, 499, 585, 903, 940
AflIII	ACRYGT	1 cut(s)	829
AgsI	TTSAA	4 cut(s)	536, 827, 853, 863
AhdI	GACNNNNNGTC	1 cut(s)	1057
AhlI	ACTAGT	1 cut(s)	482
AjuI	GAANNNNNNNTTGG	2 cut(s)	978, 1010
AloI	GAACNNNNNNTCC	2 cut(s)	253, 285
AluBI	AGCT	5 cut(s)	12, 422, 443, 562, 972
AluI	AGCT	5 cut(s)	12, 422, 443, 562, 972
Alw21I	GWGCWC	2 cut(s)	578, 704
Alw26I	GTCTC	2 cut(s)	256, 473
AlwI	GGATC	3 cut(s)	156, 390, 512
Aor13HI	TCCGGA	1 cut(s)	940
Aor51HI	AGCGCT	1 cut(s)	292
AoxI	GGCC	3 cut(s)	303, 734, 810
ApeKI	GCWGC	4 cut(s)	464, 749, 752, 959
ApoI	RAATTY	4 cut(s)	115, 728, 986, 1009
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
AspLEI	GCGC	3 cut(s)	293, 790, 914
AspS9I	GGNCC	2 cut(s)	347, 920
AsuHPI	GGTGA	1 cut(s)	217
AsuNHI	GCTAGC	1 cut(s)	439
AvaII	GGWCC	2 cut(s)	347, 920
AxyI	CCTNAGG	1 cut(s)	916
BaeGI	GKGCMC	1 cut(s)	933
BaeI	ACNNNNGTAYC	2 cut(s)	471, 504
BanI	GGYRCC	1 cut(s)	928
Bbv12I	GWGCWC	2 cut(s)	578, 704
BbvI	GCAGC	4 cut(s)	476, 736, 764, 946
BccI	CCATC	3 cut(s)	118, 931, 938
BcgI	CGANNNNNNTGC	2 cut(s)	33, 67
BclI	TGATCA	4 cut(s)	148, 649, 867, 885
BcoDI	GTCTC	2 cut(s)	256, 473
BcuI	ACTAGT	1 cut(s)	482
BfaI	CTAG	4 cut(s)	294, 411, 440, 483
BfmI	CTRYAG	1 cut(s)	750
BfoI	RGCGCY	2 cut(s)	294, 915
BfuAI	ACCTGC	1 cut(s)	68
BisI	GCNGC	4 cut(s)	465, 750, 753, 960
BlsI	GCNGC	4 cut(s)	466, 751, 754, 961
Bme18I	GGWCC	2 cut(s)	347, 920
BmeRI	GACNNNNNGTC	1 cut(s)	1057
BmgT120I	GGNCC	2 cut(s)	347, 920
BmiI	GGNNCC	2 cut(s)	895, 930
BmrI	ACTGGG	1 cut(s)	487
BmsI	GCATC	1 cut(s)	946
BmtI	GCTAGC	1 cut(s)	443
BmuI	ACTGGG	1 cut(s)	487
BoxI	GACNNNNGTC	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	632
BpuEI	CTTGAG	1 cut(s)	988
Bsa29I	ATCGAT	1 cut(s)	804
BsaBI	GATNNNNATC	2 cut(s)	166, 654
BsaWI	WCCGGW	1 cut(s)	940
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bsc4I	CCNNNNNNNGG	5 cut(s)	312, 499, 585, 903, 940
Bse1I	ACTGG	1 cut(s)	493
Bse21I	CCTNAGG	1 cut(s)	916
Bse8I	GATNNNNATC	2 cut(s)	166, 654
BseAI	TCCGGA	1 cut(s)	940
BseCI	ATCGAT	1 cut(s)	804
BseGI	GGATG	2 cut(s)	949, 961
BseJI	GATNNNNATC	2 cut(s)	166, 654
BseLI	CCNNNNNNNGG	5 cut(s)	312, 499, 585, 903, 940
BseMII	CTCAG	2 cut(s)	248, 930
BseNI	ACTGG	1 cut(s)	493
BseRI	GAGGAG	3 cut(s)	274, 491, 1054
BseSI	GKGCMC	1 cut(s)	933
BseXI	GCAGC	4 cut(s)	476, 736, 764, 946
BsgI	GTGCAG	1 cut(s)	63
BshFI	GGCC	3 cut(s)	305, 736, 812
BshNI	GGYRCC	1 cut(s)	928
BshVI	ATCGAT	1 cut(s)	804
BsiHKAI	GWGCWC	2 cut(s)	578, 704
BsiSI	CCGG	1 cut(s)	941
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	5 cut(s)	312, 499, 585, 903, 940
BsmAI	GTCTC	2 cut(s)	256, 473
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	597
BsnI	GGCC	3 cut(s)	305, 736, 812
Bsp1286I	GDGCHC	3 cut(s)	578, 704, 933
Bsp13I	TCCGGA	1 cut(s)	940
Bsp143I	GATC	9 cut(s)	70, 148, 161, 382, 517, 649, 680, 867, 885
BspACI	CCGC	2 cut(s)	428, 897
BspANI	GGCC	3 cut(s)	305, 736, 812
BspCNI	CTCAG	2 cut(s)	249, 929
BspDI	ATCGAT	1 cut(s)	804
BspEI	TCCGGA	1 cut(s)	940
BspHI	TCATGA	1 cut(s)	1061
BspLI	GGNNCC	2 cut(s)	895, 930
BspMAI	CTGCAG	1 cut(s)	754
BspMI	ACCTGC	1 cut(s)	68
BspOI	GCTAGC	1 cut(s)	443
BspPI	GGATC	3 cut(s)	156, 390, 512
BspT107I	GGYRCC	1 cut(s)	928
BsrI	ACTGG	1 cut(s)	493
BssMI	GATC	9 cut(s)	70, 148, 161, 382, 517, 649, 680, 867, 885
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	192
BstC8I	GCNNGC	4 cut(s)	441, 597, 792, 964
BstDEI	CTNAG	5 cut(s)	257, 280, 551, 632, 916
BstF5I	GGATG	2 cut(s)	949, 961
BstH2I	RGCGCY	2 cut(s)	294, 915
BstHHI	GCGC	3 cut(s)	293, 790, 914
BstKTI	GATC	9 cut(s)	73, 151, 164, 385, 520, 652, 683, 870, 888
BstMAI	GTCTC	2 cut(s)	256, 473
BstMBI	GATC	9 cut(s)	70, 148, 161, 382, 517, 649, 680, 867, 885
BstMWI	GCNNNNNNNGC	3 cut(s)	605, 633, 758
BstNSI	RCATGY	3 cut(s)	599, 833, 966
BstPAI	GACNNNNGTC	1 cut(s)	99
BstSFI	CTRYAG	1 cut(s)	750
BstSLI	GKGCMC	1 cut(s)	933
BstV1I	GCAGC	4 cut(s)	476, 736, 764, 946
BstX2I	RGATCY	2 cut(s)	161, 517
BstYI	RGATCY	2 cut(s)	161, 517
Bsu15I	ATCGAT	1 cut(s)	804
Bsu36I	CCTNAGG	1 cut(s)	916
BsuRI	GGCC	3 cut(s)	305, 736, 812
BsuTUI	ATCGAT	1 cut(s)	804
BtsCI	GGATG	2 cut(s)	949, 961
BtsIMutI	CAGTG	1 cut(s)	895
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	4 cut(s)	441, 597, 792, 964
CciI	TCATGA	1 cut(s)	1061
CfoI	GCGC	3 cut(s)	293, 790, 914
Cfr13I	GGNCC	2 cut(s)	347, 920
ClaI	ATCGAT	1 cut(s)	804
Csp6I	GTAC	1 cut(s)	488
CviAII	CATG	5 cut(s)	172, 596, 830, 963, 1062
CviQI	GTAC	1 cut(s)	488
DdeI	CTNAG	5 cut(s)	257, 280, 551, 632, 916
DpnI	GATC	9 cut(s)	72, 150, 163, 384, 519, 651, 682, 869, 887
DpnII	GATC	9 cut(s)	70, 148, 161, 382, 517, 649, 680, 867, 885
DraIII	CACNNNGTG	1 cut(s)	194
DriI	GACNNNNNGTC	1 cut(s)	1057
Eam1104I	CTCTTC	1 cut(s)	192
Eam1105I	GACNNNNNGTC	1 cut(s)	1057
EarI	CTCTTC	1 cut(s)	192
EciI	GGCGGA	1 cut(s)	886
Eco147I	AGGCCT	2 cut(s)	305, 736
Eco47I	GGWCC	2 cut(s)	347, 920
Eco47III	AGCGCT	1 cut(s)	292
Eco81I	CCTNAGG	1 cut(s)	916
EcoRI	GAATTC	1 cut(s)	728
EcoT22I	ATGCAT	1 cut(s)	597
FaeI	CATG	5 cut(s)	175, 599, 833, 966, 1065
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	5 cut(s)	171, 595, 829, 962, 1061
FauNDI	CATATG	1 cut(s)	674
FbaI	TGATCA	4 cut(s)	148, 649, 867, 885
FblI	GTMKAC	2 cut(s)	798, 834
Fnu4HI	GCNGC	4 cut(s)	465, 750, 753, 960
FokI	GGATG	2 cut(s)	956, 968
Fsp4HI	GCNGC	4 cut(s)	465, 750, 753, 960
FspBI	CTAG	4 cut(s)	294, 411, 440, 483
GlaI	GCGC	3 cut(s)	292, 789, 913
GluI	GCNGC	4 cut(s)	465, 750, 753, 960
HaeII	RGCGCY	2 cut(s)	294, 915
HaeIII	GGCC	3 cut(s)	305, 736, 812
HapII	CCGG	1 cut(s)	941
HhaI	GCGC	3 cut(s)	293, 790, 914
Hin1II	CATG	5 cut(s)	175, 599, 833, 966, 1065
Hin6I	GCGC	3 cut(s)	291, 788, 912
HinP1I	GCGC	3 cut(s)	291, 788, 912
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	2 cut(s)	17, 77
HpaII	CCGG	1 cut(s)	941
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	3 cut(s)	488, 799, 835
Hpy188I	TCNGA	4 cut(s)	258, 685, 710, 742
Hpy188III	TCNNGA	6 cut(s)	74, 134, 774, 941, 1028, 1062
Hpy8I	GTNNAC	3 cut(s)	488, 799, 835
HpyAV	CCTTC	4 cut(s)	44, 291, 316, 747
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	5 cut(s)	44, 433, 595, 752, 962
HpyF10VI	GCNNNNNNNGC	3 cut(s)	605, 633, 758
HpyF3I	CTNAG	5 cut(s)	257, 280, 551, 632, 916
Hsp92II	CATG	5 cut(s)	175, 599, 833, 966, 1065
HspAI	GCGC	3 cut(s)	291, 788, 912
Kpn2I	TCCGGA	1 cut(s)	940
Ksp22I	TGATCA	4 cut(s)	148, 649, 867, 885
Kzo9I	GATC	9 cut(s)	70, 148, 161, 382, 517, 649, 680, 867, 885
LmnI	GCTCC	1 cut(s)	559
Lsp1109I	GCAGC	4 cut(s)	476, 736, 764, 946
LweI	GCATC	1 cut(s)	946
MaeI	CTAG	4 cut(s)	294, 411, 440, 483
MaeIII	GTNAC	2 cut(s)	85, 101
MalI	GATC	9 cut(s)	72, 150, 163, 384, 519, 651, 682, 869, 887
MboI	GATC	9 cut(s)	70, 148, 161, 382, 517, 649, 680, 867, 885
MboII	GAAGA	2 cut(s)	209, 1005
MfeI	CAATTG	1 cut(s)	434
MflI	RGATCY	2 cut(s)	161, 517
MhlI	GDGCHC	3 cut(s)	578, 704, 933
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	2 cut(s)	493, 933
Mph1103I	ATGCAT	1 cut(s)	597
MroI	TCCGGA	1 cut(s)	940
MseI	TTAA	2 cut(s)	219, 1035
MspI	CCGG	1 cut(s)	941
MunI	CAATTG	1 cut(s)	434
Mva1269I	GAATGC	1 cut(s)	597
MwoI	GCNNNNNNNGC	3 cut(s)	605, 633, 758
NdeI	CATATG	1 cut(s)	674
NdeII	GATC	9 cut(s)	70, 148, 161, 382, 517, 649, 680, 867, 885
NheI	GCTAGC	1 cut(s)	439
NlaIII	CATG	5 cut(s)	175, 599, 833, 966, 1065
NlaIV	GGNNCC	2 cut(s)	895, 930
NmuCI	GTSAC	2 cut(s)	85, 101
NsiI	ATGCAT	1 cut(s)	597
NspI	RCATGY	3 cut(s)	599, 833, 966
PaeI	GCATGC	2 cut(s)	599, 966
PagI	TCATGA	1 cut(s)	1061
PceI	AGGCCT	2 cut(s)	305, 736
PciI	ACATGT	1 cut(s)	829
PctI	GAATGC	1 cut(s)	597
PfeI	GAWTC	1 cut(s)	77
PflMI	CCANNNNNTGG	1 cut(s)	499
PkrI	GCNGC	4 cut(s)	466, 751, 754, 961
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PscI	ACATGT	1 cut(s)	829
PshAI	GACNNNNGTC	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	895, 930
PspPI	GGNCC	2 cut(s)	347, 920
PstI	CTGCAG	1 cut(s)	754
PsuI	RGATCY	2 cut(s)	161, 517
RsaI	GTAC	1 cut(s)	489
RsaNI	GTAC	1 cut(s)	488
SaqAI	TTAA	2 cut(s)	219, 1035
SatI	GCNGC	4 cut(s)	465, 750, 753, 960
Sau3AI	GATC	9 cut(s)	70, 148, 161, 382, 517, 649, 680, 867, 885
Sau96I	GGNCC	2 cut(s)	347, 920
SchI	GAGTC	1 cut(s)	11
SduI	GDGCHC	3 cut(s)	578, 704, 933
SfaNI	GCATC	1 cut(s)	946
SfcI	CTRYAG	1 cut(s)	750
SinI	GGWCC	2 cut(s)	347, 920
SmlI	CTYRAG	1 cut(s)	967
SmoI	CTYRAG	1 cut(s)	967
SpeI	ACTAGT	1 cut(s)	482
SphI	GCATGC	2 cut(s)	599, 966
SseBI	AGGCCT	2 cut(s)	305, 736
SsiI	CCGC	2 cut(s)	428, 897
SspMI	CTAG	4 cut(s)	294, 411, 440, 483
StuI	AGGCCT	2 cut(s)	305, 736
TaaI	ACNGT	1 cut(s)	158
TaqI	TCGA	2 cut(s)	53, 804
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	2 cut(s)	219, 1035
Tru9I	TTAA	2 cut(s)	219, 1035
TscAI	CASTG	1 cut(s)	895
TseFI	GTSAC	2 cut(s)	85, 101
TseI	GCWGC	4 cut(s)	464, 749, 752, 959
Tsp45I	GTSAC	2 cut(s)	85, 101
TspDTI	ATGAA	4 cut(s)	386, 417, 607, 999
TspGWI	ACGGA	1 cut(s)	648
TspRI	CASTG	1 cut(s)	895
Van91I	CCANNNNNTGG	1 cut(s)	499
VpaK11BI	GGWCC	2 cut(s)	347, 920
XapI	RAATTY	4 cut(s)	115, 728, 986, 1009
XceI	RCATGY	3 cut(s)	599, 833, 966
XcmI	CCANNNNNNNNNTGG	3 cut(s)	341, 357, 941
XmiI	GTMKAC	2 cut(s)	798, 834
XspI	CTAG	4 cut(s)	294, 411, 440, 483
Zsp2I	ATGCAT	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.