Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002594

Physical Location & Seq

Genomic Coordinates Forward (+)

57953475 .. 57958937

Gene Structure 5463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G038150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGGGGTGCGTCTTGCATCGTCTGTGGCACTACCCGAGGGAAAATGCCATGTTGATCTGCACCCCTCCAAGATCACTGCTATTAGGGTTTCCCTTGCAACTAGGGTTTTCAGTTTCAAGCCTGCTTTGCGCAGAAGACAACTTTTTTATGATAATGATTTTGGGTCTTTGAGGGTTGAGGTTGAGTCTGAGGAGGTTACTTGGAATCGTCACAGAAACAATAATCAAAACCGGGGCTTTGATAATGATGAAGAAGACGGGCTGCCATTGCAGATTAGTGATGAGTATTTGGCTTCTATTATTGAAAAGGAATCACACCACTTGCCTCGTGTTGATTACTTGAAGAGATTGCAAAGTGGGGATTTGGACCTTGGGGCTAGAAATGAGGCTGTTGATTGGATTCAAAAGGCAAATTCCCATTTCAGCTTTGGTCCTCTGTGTCAATATCTATCTGTAAGCTACTTGGATCGCTTCCTTTCGGCCTATGAAATACCTAATGGCAAAGCTTGGACTATGCAATTGTTGGCTGTGGCATGTTTGTCCCTCGCAGCCAAAATGGACGAGATTGATGTCCCACTCTCTCTTGATTTACAGGTGGCCGAGTCAAAATATGTATTTGAGGCTAGAACTATTCAAAGAATGGAGCTACTGGTCTTGAGCACATTGAGATGGAGAATGCAAGCAGTTACTCCAATCTCATTCATAGATTCCTTCCTAGTCAAGCTCAATGAGGACAAAATCCCACTTAAAGCTTCAATCTTTAGAGCAGTTCAACTCATATTGAGCACAACCAAGGGAATTGACTTCTTGGAATTTAAACCATCAGAGGTTGCAGCAGCAGTGGCCATATCTGTAGCAGGAGAAAGCAAAGCATTGGATGACACTCAGAAAGCAATCTCTGTGCTCATCCAACATGTCGACTTAGAAAAGGAGAGAGTGGTAAAGTGTGTAAATTTGATTCAAGATGTTGGATTAATGAGTGGGGCCTTCAAGAATGGTAGTGGTTCAGTGCAGTCTGTGCCACAAAGCCCCATTGGGGTGTTGGATGTTGCATGCTTCAGCTATAAAAGTGATGATCACACCACAGTTGGGTCATGTGCAAATTCTTTTCATAATGGCTCAGACACCAAAAGAAGGAAGCTAAACAGACCCTATGAAGTGGAGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

389

Amino Acids

43.51

Weight (kDa)

6.03

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	98 - 226	8.6e-29	Cyclin, N-terminal domain
Cyclin_C	PF02984	229 - 324	3.1e-09	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22490 AT2G22490 AT5G10440 AT5G10440 AT5G65420 AT5G65420 AT5G65420 AT5G65420
fragaria_vesca	FvH4_1g19970 FvH4_5g35800
malus_domestica	MD01G1037500.v1.1 MD08G1193300.v1.1 MD15G1315400.v1.1 MD15G1381900.v1.1
prunus_persica	Prupe.1G527900_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1
pyrus_communis	pycom01g06540 pycom15g27860
rosa_chinensis	RchiOBHm_Chr2g0111911 RchiOBHm_Chr7g0237481
rosa_laevigata	RLG00000000999 RLG00000017937
rosa_multiflora	Rmu_sc0002923.1_g000002 Rmu_sc0006833.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132000 Rroxscaffold_3G00224140
rosa_rugosa	Rorug02G0177000 Rorug07G0303700
rosa_samantha	Rh2AG229400 Rh2BG242100 Rh2BG242200 Rh2CG233500 Rh2DG237100 Rh7BG430900 Rh7CG478300 Rh7DG447600
rosa_wichuraiana	Rw2G017750 Rw7G038150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	131
AccI	GTMKAC	1 cut(s)	918
AclWI	GGATC	1 cut(s)	474
AcoI	YGGCCR	2 cut(s)	597, 843
AcsI	RAATTY	4 cut(s)	412, 812, 952, 1102
AcuI	CTGAAG	1 cut(s)	1042
AfiI	CCNNNNNNNGG	3 cut(s)	1036, 1089, 1134
AflIII	ACRYGT	1 cut(s)	913
AgsI	TTSAA	9 cut(s)	118, 305, 343, 404, 635, 756, 773, 962, 991
AluBI	AGCT	8 cut(s)	426, 459, 506, 646, 724, 752, 1062, 1141
AluI	AGCT	8 cut(s)	426, 459, 506, 646, 724, 752, 1062, 1141
Alw21I	GWGCWC	3 cut(s)	662, 788, 906
AlwI	GGATC	1 cut(s)	474
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	4 cut(s)	480, 597, 843, 984
ApeKI	GCWGC	4 cut(s)	262, 548, 833, 836
ApoI	RAATTY	4 cut(s)	412, 812, 952, 1102
AseI	ATTAAT	1 cut(s)	974
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	3 cut(s)	367, 431, 984
AsuC2I	CCSGG	1 cut(s)	233
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	2 cut(s)	367, 431
BalI	TGGCCA	1 cut(s)	845
BauI	CACGAG	1 cut(s)	327
BbsI	GAAGAC	2 cut(s)	142, 261
Bbv12I	GWGCWC	3 cut(s)	662, 788, 906
BbvI	GCAGC	4 cut(s)	249, 560, 845, 848
BccI	CCATC	2 cut(s)	663, 829
BclI	TGATCA	1 cut(s)	1075
BcnI	CCSGG	1 cut(s)	233
BfaI	CTAG	4 cut(s)	102, 378, 624, 716
BfmI	CTRYAG	1 cut(s)	852
BisI	GCNGC	4 cut(s)	263, 549, 834, 837
BlsI	GCNGC	4 cut(s)	264, 550, 835, 838
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	2 cut(s)	367, 431
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	3 cut(s)	367, 431, 984
BmiI	GGNNCC	1 cut(s)	985
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	26
BpiI	GAAGAC	2 cut(s)	142, 261
BpuEI	CTTGAG	1 cut(s)	676
BpuMI	CCSGG	1 cut(s)	233
BsaJI	CCNNGG	4 cut(s)	36, 232, 370, 792
Bsc4I	CCNNNNNNNGG	3 cut(s)	1036, 1089, 1134
Bse1I	ACTGG	1 cut(s)	654
Bse3DI	GCAATG	1 cut(s)	266
BseDI	CCNNGG	4 cut(s)	36, 232, 370, 792
BseGI	GGATG	3 cut(s)	883, 906, 1051
BseLI	CCNNNNNNNGG	3 cut(s)	1036, 1089, 1134
BseMI	GCAATG	1 cut(s)	266
BseMII	CTCAG	3 cut(s)	180, 899, 1134
BseNI	ACTGG	1 cut(s)	654
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	4 cut(s)	249, 560, 845, 848
BsgI	GTGCAG	2 cut(s)	44, 1031
BshFI	GGCC	4 cut(s)	482, 599, 845, 986
BsiHKAI	GWGCWC	3 cut(s)	662, 788, 906
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	232
BslFI	GGGAC	2 cut(s)	526, 557
BslI	CCNNNNNNNGG	3 cut(s)	1036, 1089, 1134
BsmFI	GGGAC	2 cut(s)	526, 557
BsmI	GAATGC	1 cut(s)	681
BsnI	GGCC	4 cut(s)	482, 599, 845, 986
BsoBI	CYCGRG	1 cut(s)	35
Bsp1286I	GDGCHC	3 cut(s)	662, 788, 906
Bsp143I	GATC	4 cut(s)	55, 72, 466, 1075
BspANI	GGCC	4 cut(s)	482, 599, 845, 986
BspCNI	CTCAG	3 cut(s)	181, 898, 1133
BspLI	GGNNCC	1 cut(s)	985
BspPI	GGATC	1 cut(s)	474
BsrDI	GCAATG	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	654
BssECI	CCNNGG	4 cut(s)	36, 232, 370, 792
BssMI	GATC	4 cut(s)	55, 72, 466, 1075
BssSI	CACGAG	1 cut(s)	327
BssT1I	CCWWGG	2 cut(s)	370, 792
Bst2BI	CACGAG	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	1087
Bst6I	CTCTTC	1 cut(s)	338
BstAPI	GCANNNNNTGC	1 cut(s)	1018
BstC8I	GCNNGC	3 cut(s)	123, 681, 1054
BstDEI	CTNAG	4 cut(s)	189, 885, 922, 1120
BstF5I	GGATG	3 cut(s)	883, 906, 1051
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	4 cut(s)	58, 75, 469, 1078
BstMBI	GATC	4 cut(s)	55, 72, 466, 1075
BstMWI	GCNNNNNNNGC	4 cut(s)	127, 268, 842, 1018
BstNSI	RCATGY	3 cut(s)	537, 917, 1056
BstSCI	CCNGG	1 cut(s)	231
BstSFI	CTRYAG	1 cut(s)	852
BstV1I	GCAGC	4 cut(s)	249, 560, 845, 848
BstV2I	GAAGAC	2 cut(s)	142, 261
BsuRI	GGCC	4 cut(s)	482, 599, 845, 986
BtsCI	GGATG	3 cut(s)	883, 906, 1051
BtsI	GCAGTG	2 cut(s)	75, 846
BtsIMutI	CAGTG	3 cut(s)	75, 846, 1014
Cac8I	GCNNGC	3 cut(s)	123, 681, 1054
CfoI	GCGC	1 cut(s)	132
Cfr13I	GGNCC	3 cut(s)	367, 431, 984
CviAII	CATG	5 cut(s)	50, 534, 914, 1053, 1095
DdeI	CTNAG	4 cut(s)	189, 885, 922, 1120
DpnI	GATC	4 cut(s)	57, 74, 468, 1077
DpnII	GATC	4 cut(s)	55, 72, 466, 1075
DraI	TTTAAA	1 cut(s)	817
EaeI	YGGCCR	2 cut(s)	597, 843
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Eco130I	CCWWGG	2 cut(s)	370, 792
Eco47I	GGWCC	2 cut(s)	367, 431
Eco57I	CTGAAG	1 cut(s)	1042
Eco88I	CYCGRG	1 cut(s)	35
EcoO109I	RGGNCCY	1 cut(s)	984
EcoT14I	CCWWGG	2 cut(s)	370, 792
ErhI	CCWWGG	2 cut(s)	370, 792
FaeI	CATG	5 cut(s)	53, 537, 917, 1056, 1098
FaqI	GGGAC	2 cut(s)	526, 557
FatI	CATG	5 cut(s)	49, 533, 913, 1052, 1094
FbaI	TGATCA	1 cut(s)	1075
FblI	GTMKAC	1 cut(s)	918
Fnu4HI	GCNGC	4 cut(s)	263, 549, 834, 837
FokI	GGATG	3 cut(s)	890, 893, 1058
Fsp4HI	GCNGC	4 cut(s)	263, 549, 834, 837
FspBI	CTAG	4 cut(s)	102, 378, 624, 716
FspI	TGCGCA	1 cut(s)	131
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	4 cut(s)	263, 549, 834, 837
HaeIII	GGCC	4 cut(s)	482, 599, 845, 986
HapII	CCGG	1 cut(s)	232
HhaI	GCGC	1 cut(s)	132
Hin1II	CATG	5 cut(s)	53, 537, 917, 1056, 1098
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HincII	GTYRAC	1 cut(s)	919
HindII	GTYRAC	1 cut(s)	919
HindIII	AAGCTT	2 cut(s)	504, 750
HinfI	GANTC	7 cut(s)	185, 205, 311, 400, 602, 707, 958
HpaII	CCGG	1 cut(s)	232
Hpy166II	GTNNAC	1 cut(s)	919
Hpy188I	TCNGA	4 cut(s)	190, 826, 888, 1123
Hpy188III	TCNNGA	4 cut(s)	584, 655, 962, 991
Hpy8I	GTNNAC	1 cut(s)	919
HpyAV	CCTTC	3 cut(s)	721, 997, 1128
HpyCH4III	ACNGT	1 cut(s)	1087
HpyF10VI	GCNNNNNNNGC	4 cut(s)	127, 268, 842, 1018
HpyF3I	CTNAG	4 cut(s)	189, 885, 922, 1120
Hsp92II	CATG	5 cut(s)	53, 537, 917, 1056, 1098
HspAI	GCGC	1 cut(s)	130
Ksp22I	TGATCA	1 cut(s)	1075
Kzo9I	GATC	4 cut(s)	55, 72, 466, 1075
LmnI	GCTCC	1 cut(s)	643
LpnPI	CCDG	5 cut(s)	135, 245, 578, 635, 843
Lsp1109I	GCAGC	4 cut(s)	249, 560, 845, 848
LweI	GCATC	1 cut(s)	26
MaeI	CTAG	4 cut(s)	102, 378, 624, 716
MaeIII	GTNAC	3 cut(s)	196, 209, 685
MalI	GATC	4 cut(s)	57, 74, 468, 1077
MboI	GATC	4 cut(s)	55, 72, 466, 1075
MboII	GAAGA	4 cut(s)	147, 263, 266, 355
MfeI	CAATTG	1 cut(s)	518
MhlI	GDGCHC	3 cut(s)	662, 788, 906
MlsI	TGGCCA	1 cut(s)	845
MluCI	AATT	6 cut(s)	412, 518, 798, 812, 952, 1102
MluNI	TGGCCA	1 cut(s)	845
MlyI	GAGTC	2 cut(s)	194, 611
MmeI	TCCRAC	3 cut(s)	934, 949, 1023
Mox20I	TGGCCA	1 cut(s)	845
MscI	TGGCCA	1 cut(s)	845
MseI	TTAA	3 cut(s)	747, 816, 974
MslI	CAYNNNNRTG	2 cut(s)	667, 1037
Msp20I	TGGCCA	1 cut(s)	845
MspI	CCGG	1 cut(s)	232
MspR9I	CCNGG	1 cut(s)	233
MunI	CAATTG	1 cut(s)	518
Mva1269I	GAATGC	1 cut(s)	681
MwoI	GCNNNNNNNGC	4 cut(s)	127, 268, 842, 1018
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	4 cut(s)	55, 72, 466, 1075
NlaIII	CATG	5 cut(s)	53, 537, 917, 1056, 1098
NlaIV	GGNNCC	1 cut(s)	985
NmeAIII	GCCGAG	1 cut(s)	625
NmuCI	GTSAC	1 cut(s)	209
NsbI	TGCGCA	1 cut(s)	131
NspI	RCATGY	3 cut(s)	537, 917, 1056
PaeI	GCATGC	1 cut(s)	1056
PciI	ACATGT	1 cut(s)	913
PctI	GAATGC	1 cut(s)	681
PfeI	GAWTC	5 cut(s)	205, 311, 400, 707, 958
PkrI	GCNGC	4 cut(s)	264, 550, 835, 838
PleI	GAGTC	2 cut(s)	193, 610
PpsI	GAGTC	2 cut(s)	193, 610
PscI	ACATGT	1 cut(s)	913
PshBI	ATTAAT	1 cut(s)	974
PspN4I	GGNNCC	1 cut(s)	985
PspPI	GGNCC	3 cut(s)	367, 431, 984
RseI	CAYNNNNRTG	2 cut(s)	667, 1037
SalI	GTCGAC	1 cut(s)	917
SaqAI	TTAA	3 cut(s)	747, 816, 974
SatI	GCNGC	4 cut(s)	263, 549, 834, 837
Sau3AI	GATC	4 cut(s)	55, 72, 466, 1075
Sau96I	GGNCC	3 cut(s)	367, 431, 984
SchI	GAGTC	2 cut(s)	194, 611
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	3 cut(s)	662, 788, 906
SfaNI	GCATC	1 cut(s)	26
SfcI	CTRYAG	1 cut(s)	852
SinI	GGWCC	2 cut(s)	367, 431
SmiMI	CAYNNNNRTG	2 cut(s)	667, 1037
SmlI	CTYRAG	1 cut(s)	655
SmoI	CTYRAG	1 cut(s)	655
SphI	GCATGC	1 cut(s)	1056
Sse9I	AATT	6 cut(s)	412, 518, 798, 812, 952, 1102
SspMI	CTAG	4 cut(s)	102, 378, 624, 716
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	2 cut(s)	370, 792
TaaI	ACNGT	1 cut(s)	1087
TaqI	TCGA	1 cut(s)	918
TasI	AATT	6 cut(s)	412, 518, 798, 812, 952, 1102
TfiI	GAWTC	5 cut(s)	205, 311, 400, 707, 958
Tru1I	TTAA	3 cut(s)	747, 816, 974
Tru9I	TTAA	3 cut(s)	747, 816, 974
TscAI	CASTG	3 cut(s)	82, 846, 1014
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	4 cut(s)	262, 548, 833, 836
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	5 cut(s)	264, 501, 691, 1100, 1170
TspRI	CASTG	3 cut(s)	82, 846, 1014
VpaK11BI	GGWCC	2 cut(s)	367, 431
VspI	ATTAAT	1 cut(s)	974
XapI	RAATTY	4 cut(s)	412, 812, 952, 1102
XceI	RCATGY	3 cut(s)	537, 917, 1056
XcmI	CCANNNNNNNNNTGG	2 cut(s)	425, 1039
XmiI	GTMKAC	1 cut(s)	918
XspI	CTAG	4 cut(s)	102, 378, 624, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.