Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002594

Physical Location & Seq

Genomic Coordinates Forward (+)

63488162 .. 63491712

Gene Structure 3551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG447600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCAATTGTTGGCGGTGGCATGTTTGTCCCTCGCAGCCAAAATGGACGAGATTGATGTCCCACTCTCTCTTGATTTACAGGTGGCCGAGTCAAAATATGTATTTGAGGCTAGAACTATTCAAAGAATGGAGCTACTGGTCTTGAGCACATTGAGATGGAGAATGCAAGCAGTTACTCCAATCTCATTCATAGATTCCTTCCTAGTCAAGCTCAATGAGGACAAAATCCCACTTAAAGCTTCAATCTTTAGAGCAGTTCAACTCATATTGAGCACAACCAAGGGAATTGACTTCTTGGAATTTAAACCATCAGAGGTCGCAGCAGCAGTGGCCATTTCTGTAGCAGGAGAAAGCAAAGCATTAGATGACACTGAGAAAGCTATCTCTGTGCTCGTCCAACATGTCGACTTAGAAAAGGTACATAAATCATTGATGACTTTGGCTTTTGCTCTTATCATTTTGGTGTTGATTACAAATTTATACAATCACATTCACATACAAACATCAAACATGATTACGAATACATTAATTTGTTTTTGGTTTTGGTTTTTGCAGGAGAGAGTGGTAAAGTGTGTAAATTTGATTCAAGATGTTGGATTAATGAGTGGGGCCTTCAAGAATGGTAGTGGTTCAGTGCAGTCTGTGCCACAAAGCCCCATTGGGGTGTTGGATGTTGCATGCTTCAGCTATAAAAGTGATGATCACACCACAGTTGGGTCATGTGCAAATTCTTTTCATAATGGCTCAGACACCAAAAGAAGGAAGCTAAACAGACCCTATGAAGTGGAGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

264

Amino Acids

29.35

Weight (kDa)

6.31

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	1 - 55	4.2e-12	Cyclin, N-terminal domain
Cyclin_C	PF02984	58 - 118	7e-06	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22490 AT2G22490 AT5G10440 AT5G10440 AT5G65420 AT5G65420 AT5G65420 AT5G65420
fragaria_vesca	FvH4_1g19970 FvH4_5g35800
malus_domestica	MD01G1037500.v1.1 MD08G1193300.v1.1 MD15G1315400.v1.1 MD15G1381900.v1.1
prunus_persica	Prupe.1G527900_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1
pyrus_communis	pycom01g06540 pycom15g27860
rosa_chinensis	RchiOBHm_Chr2g0111911 RchiOBHm_Chr7g0237481
rosa_laevigata	RLG00000000999 RLG00000017937
rosa_multiflora	Rmu_sc0002923.1_g000002 Rmu_sc0006833.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132000 Rroxscaffold_3G00224140
rosa_rugosa	Rorug02G0177000 Rorug07G0303700
rosa_samantha	Rh2AG229400 Rh2BG242100 Rh2BG242200 Rh2CG233500 Rh2DG237100 Rh7BG430900 Rh7CG478300 Rh7DG447600
rosa_wichuraiana	Rw2G017750 Rw7G038150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	405
AciI	CCGC	1 cut(s)	14
AcoI	YGGCCR	2 cut(s)	84, 330
AcsI	RAATTY	4 cut(s)	299, 475, 577, 727
AcuI	CTGAAG	1 cut(s)	667
AfaI	GTAC	1 cut(s)	420
AfiI	CCNNNNNNNGG	3 cut(s)	661, 714, 759
AflIII	ACRYGT	1 cut(s)	400
AgsI	TTSAA	5 cut(s)	122, 243, 260, 587, 616
AluBI	AGCT	6 cut(s)	133, 211, 239, 380, 687, 766
AluI	AGCT	6 cut(s)	133, 211, 239, 380, 687, 766
Alw21I	GWGCWC	3 cut(s)	149, 275, 393
AoxI	GGCC	3 cut(s)	84, 330, 609
ApeKI	GCWGC	3 cut(s)	35, 320, 323
ApoI	RAATTY	4 cut(s)	299, 475, 577, 727
AseI	ATTAAT	2 cut(s)	527, 599
AspS9I	GGNCC	1 cut(s)	609
BalI	TGGCCA	1 cut(s)	332
Bbv12I	GWGCWC	3 cut(s)	149, 275, 393
BbvI	GCAGC	3 cut(s)	47, 332, 335
BccI	CCATC	2 cut(s)	150, 316
BclI	TGATCA	1 cut(s)	700
BfaI	CTAG	2 cut(s)	111, 203
BfmI	CTRYAG	1 cut(s)	339
BisI	GCNGC	3 cut(s)	36, 321, 324
BlsI	GCNGC	3 cut(s)	37, 322, 325
BmgT120I	GGNCC	1 cut(s)	609
BmiI	GGNNCC	1 cut(s)	610
BpuEI	CTTGAG	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	3 cut(s)	661, 714, 759
Bse1I	ACTGG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	676
BseLI	CCNNNNNNNGG	3 cut(s)	661, 714, 759
BseMII	CTCAG	2 cut(s)	363, 759
BseNI	ACTGG	1 cut(s)	141
BseXI	GCAGC	3 cut(s)	47, 332, 335
BsgI	GTGCAG	1 cut(s)	656
BshFI	GGCC	3 cut(s)	86, 332, 611
BsiHKAI	GWGCWC	3 cut(s)	149, 275, 393
BslFI	GGGAC	2 cut(s)	13, 44
BslI	CCNNNNNNNGG	3 cut(s)	661, 714, 759
BsmFI	GGGAC	2 cut(s)	13, 44
BsmI	GAATGC	1 cut(s)	168
BsnI	GGCC	3 cut(s)	86, 332, 611
Bsp1286I	GDGCHC	3 cut(s)	149, 275, 393
Bsp143I	GATC	1 cut(s)	700
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	3 cut(s)	86, 332, 611
BspCNI	CTCAG	2 cut(s)	364, 758
BspLI	GGNNCC	1 cut(s)	610
BsrI	ACTGG	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	1 cut(s)	700
BssT1I	CCWWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	712
BstAPI	GCANNNNNTGC	1 cut(s)	643
BstC8I	GCNNGC	2 cut(s)	168, 679
BstDEI	CTNAG	3 cut(s)	372, 409, 745
BstF5I	GGATG	1 cut(s)	676
BstKTI	GATC	1 cut(s)	703
BstMBI	GATC	1 cut(s)	700
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 643
BstNSI	RCATGY	3 cut(s)	24, 404, 681
BstSFI	CTRYAG	1 cut(s)	339
BstV1I	GCAGC	3 cut(s)	47, 332, 335
BsuRI	GGCC	3 cut(s)	86, 332, 611
BtsCI	GGATG	1 cut(s)	676
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	3 cut(s)	333, 369, 639
Cac8I	GCNNGC	2 cut(s)	168, 679
Cfr13I	GGNCC	1 cut(s)	609
Csp6I	GTAC	1 cut(s)	419
CviAII	CATG	5 cut(s)	21, 401, 511, 678, 720
CviQI	GTAC	1 cut(s)	419
DdeI	CTNAG	3 cut(s)	372, 409, 745
DpnI	GATC	1 cut(s)	702
DpnII	GATC	1 cut(s)	700
DraI	TTTAAA	1 cut(s)	304
EaeI	YGGCCR	2 cut(s)	84, 330
Eco130I	CCWWGG	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	667
EcoO109I	RGGNCCY	1 cut(s)	609
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	5 cut(s)	24, 404, 514, 681, 723
FaqI	GGGAC	2 cut(s)	13, 44
FatI	CATG	5 cut(s)	20, 400, 510, 677, 719
FbaI	TGATCA	1 cut(s)	700
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	3 cut(s)	36, 321, 324
FokI	GGATG	1 cut(s)	683
Fsp4HI	GCNGC	3 cut(s)	36, 321, 324
FspBI	CTAG	2 cut(s)	111, 203
GluI	GCNGC	3 cut(s)	36, 321, 324
HaeIII	GGCC	3 cut(s)	86, 332, 611
Hin1II	CATG	5 cut(s)	24, 404, 514, 681, 723
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	3 cut(s)	89, 194, 583
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	2 cut(s)	313, 748
Hpy188III	TCNNGA	4 cut(s)	71, 142, 587, 616
Hpy8I	GTNNAC	1 cut(s)	406
HpyAV	CCTTC	3 cut(s)	208, 622, 753
HpyCH4III	ACNGT	1 cut(s)	712
HpyCH4V	TGCA	6 cut(s)	4, 166, 553, 637, 677, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 643
HpyF3I	CTNAG	3 cut(s)	372, 409, 745
Hsp92II	CATG	5 cut(s)	24, 404, 514, 681, 723
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	1 cut(s)	700
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	4 cut(s)	65, 122, 330, 539
Lsp1109I	GCAGC	3 cut(s)	47, 332, 335
MaeI	CTAG	2 cut(s)	111, 203
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	1 cut(s)	702
MboI	GATC	1 cut(s)	700
MfeI	CAATTG	1 cut(s)	5
MhlI	GDGCHC	3 cut(s)	149, 275, 393
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	7 cut(s)	5, 285, 299, 475, 528, 577, 727
MluNI	TGGCCA	1 cut(s)	332
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	3 cut(s)	421, 574, 648
MnlI	CCTC	4 cut(s)	41, 100, 211, 307
Mox20I	TGGCCA	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	4 cut(s)	234, 303, 527, 599
MslI	CAYNNNNRTG	3 cut(s)	154, 461, 662
Msp20I	TGGCCA	1 cut(s)	332
MunI	CAATTG	1 cut(s)	5
Mva1269I	GAATGC	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	329, 643
NdeII	GATC	1 cut(s)	700
NlaIII	CATG	5 cut(s)	24, 404, 514, 681, 723
NlaIV	GGNNCC	1 cut(s)	610
NmeAIII	GCCGAG	1 cut(s)	112
NspI	RCATGY	3 cut(s)	24, 404, 681
PaeI	GCATGC	1 cut(s)	681
PciI	ACATGT	1 cut(s)	400
PctI	GAATGC	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	194, 583
PkrI	GCNGC	3 cut(s)	37, 322, 325
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PscI	ACATGT	1 cut(s)	400
PshBI	ATTAAT	2 cut(s)	527, 599
PspN4I	GGNNCC	1 cut(s)	610
PspPI	GGNCC	1 cut(s)	609
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
RseI	CAYNNNNRTG	3 cut(s)	154, 461, 662
SalI	GTCGAC	1 cut(s)	404
SaqAI	TTAA	4 cut(s)	234, 303, 527, 599
SatI	GCNGC	3 cut(s)	36, 321, 324
Sau3AI	GATC	1 cut(s)	700
Sau96I	GGNCC	1 cut(s)	609
SchI	GAGTC	1 cut(s)	98
SduI	GDGCHC	3 cut(s)	149, 275, 393
SetI	ASST	9 cut(s)	84, 135, 213, 241, 318, 382, 420, 689, 768
SfcI	CTRYAG	1 cut(s)	339
SmiMI	CAYNNNNRTG	3 cut(s)	154, 461, 662
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
SphI	GCATGC	1 cut(s)	681
Sse9I	AATT	7 cut(s)	5, 285, 299, 475, 528, 577, 727
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	2 cut(s)	111, 203
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	712
TaqI	TCGA	1 cut(s)	405
TasI	AATT	7 cut(s)	5, 285, 299, 475, 528, 577, 727
TfiI	GAWTC	2 cut(s)	194, 583
Tru1I	TTAA	4 cut(s)	234, 303, 527, 599
Tru9I	TTAA	4 cut(s)	234, 303, 527, 599
TscAI	CASTG	3 cut(s)	333, 376, 639
TseI	GCWGC	3 cut(s)	35, 320, 323
TspDTI	ATGAA	3 cut(s)	178, 725, 795
TspRI	CASTG	3 cut(s)	333, 376, 639
VspI	ATTAAT	2 cut(s)	527, 599
XapI	RAATTY	4 cut(s)	299, 475, 577, 727
XceI	RCATGY	3 cut(s)	24, 404, 681
XcmI	CCANNNNNNNNNTGG	1 cut(s)	664
XmiI	GTMKAC	1 cut(s)	405
XspI	CTAG	2 cut(s)	111, 203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.