Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002594

Physical Location & Seq

Genomic Coordinates Reverse (-)

7289552 .. 7292584

Gene Structure 3033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00224140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCACCCAGTTTTGACTGTGCAGTTTCAAGCCTGCTTTGCGCAGAAGACAACCTTTTTGATGATAATGATTTTGGGTCTTTGAGGGTTGAGGTTGAGTCTGAGGAGGTTACTTGGAATCGTCACAGAAACAATAATCAAAACCGGGGCTTTGATAATGATGAAGAAGATGGGCTGCCATTGCAGAGTAGTGATGAGTATTTGGCTTCTATTGTTGAAAAGGAATCACACCACTTGCCTCGTGTTGATTACTTGAAGAGATTGCAAAGTGGGGATTTGGACCTTGGGGCTAGAAATGAGGCTGTTGATTGGATTCAAAAGGCGAATTCCCATTTCAGCTTTGGACCTCTGTGTCAATATCTATCTGTAAGCTACTTGGATCGCTTCCTTTCGGCCTATGAAATACCTAATGGCAAAGCTTGGACTATGCAATTGTTGGCTGTGGCATGTTTGTCCCTCGCAGCCAAAATGGACGAGATTGATGTCCCACTCTCTCTTGATTTACAGGTGGCCGAGTCAAAATATGTATTTGAGGCTAGAACTATTCAAAGAATGGAACTACTGGTCTTGAGCACATTGAGATGGAGAATGCAAGCAGTTACTCCAATCTCATTCATAGATTCCTTCCTTGTCAAGCTCAATGAGGACAAAATCCCACTTAAAGCTTCAATCTTTAGAGCAGTTCAACTCATATTGAGCACAACCAAGGGAATTGACTTCTTGGAATTTAAACCATCAGAGGTCGCAGCAGCAGTGGCGATATCTGTAGCAGGAGAAAGCAAAGCATTAGATGACACTGAGAAAGCAATCTCTGTGCTCATCCAACATGTCGACTTAGAAAAGGAGAGAGTGGTAAAGTGTGTAAATTTGATTCATGATGTTGAATTAATGAGTGGGGCCTTCAAGAATGGTAGTGGTTCAGTGCAGTCTGTGCCACAAAGCCCCATTGGGGTGTTGGATGTTGCATGCTTCAGCTATAAAAGTGATGATCACACCACAGTTGGGTCATGTGCAAATTCTTTTCATAATGGCTCAGACACCAAAAGAAGGAAGCTAAACAGACCCTATGAAGTGGAGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

360

Amino Acids

40.17

Weight (kDa)

4.88

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	69 - 197	9.5e-29	Cyclin, N-terminal domain
Cyclin_C	PF02984	200 - 295	1.3e-09	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22490 AT2G22490 AT5G10440 AT5G10440 AT5G65420 AT5G65420 AT5G65420 AT5G65420
fragaria_vesca	FvH4_1g19970 FvH4_5g35800
malus_domestica	MD01G1037500.v1.1 MD08G1193300.v1.1 MD15G1315400.v1.1 MD15G1381900.v1.1
prunus_persica	Prupe.1G527900_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1
pyrus_communis	pycom01g06540 pycom15g27860
rosa_chinensis	RchiOBHm_Chr2g0111911 RchiOBHm_Chr7g0237481
rosa_laevigata	RLG00000000999 RLG00000017937
rosa_multiflora	Rmu_sc0002923.1_g000002 Rmu_sc0006833.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132000 Rroxscaffold_3G00224140
rosa_rugosa	Rorug02G0177000 Rorug07G0303700
rosa_samantha	Rh2AG229400 Rh2BG242100 Rh2BG242200 Rh2CG233500 Rh2DG237100 Rh7BG430900 Rh7CG478300 Rh7DG447600
rosa_wichuraiana	Rw2G017750 Rw7G038150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	351
Acc16I	TGCGCA	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	831
AclWI	GGATC	1 cut(s)	387
AcoI	YGGCCR	1 cut(s)	510
AcsI	RAATTY	4 cut(s)	325, 725, 865, 1015
AcuI	CTGAAG	1 cut(s)	955
AfiI	CCNNNNNNNGG	3 cut(s)	949, 1002, 1047
AflIII	ACRYGT	1 cut(s)	826
AgsI	TTSAA	9 cut(s)	30, 218, 256, 317, 548, 669, 686, 884, 904
AluBI	AGCT	7 cut(s)	339, 372, 419, 637, 665, 975, 1054
AluI	AGCT	7 cut(s)	339, 372, 419, 637, 665, 975, 1054
Alw21I	GWGCWC	3 cut(s)	575, 701, 819
AlwI	GGATC	1 cut(s)	387
AoxI	GGCC	3 cut(s)	393, 510, 897
ApeKI	GCWGC	4 cut(s)	175, 461, 746, 749
ApoI	RAATTY	4 cut(s)	325, 725, 865, 1015
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
AseI	ATTAAT	1 cut(s)	887
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	3 cut(s)	280, 344, 897
AsuC2I	CCSGG	1 cut(s)	146
AvaII	GGWCC	2 cut(s)	280, 344
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	3 cut(s)	575, 701, 819
BbvI	GCAGC	4 cut(s)	162, 473, 758, 761
BccI	CCATC	3 cut(s)	164, 576, 742
BclI	TGATCA	1 cut(s)	988
BcnI	CCSGG	1 cut(s)	146
BfaI	CTAG	2 cut(s)	291, 537
BfmI	CTRYAG	1 cut(s)	765
BisI	GCNGC	4 cut(s)	176, 462, 747, 750
BlsI	GCNGC	4 cut(s)	177, 463, 748, 751
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	2 cut(s)	280, 344
BmgT120I	GGNCC	3 cut(s)	280, 344, 897
BmiI	GGNNCC	2 cut(s)	6, 898
BmrFI	CCNGG	1 cut(s)	146
BmrI	ACTGGG	1 cut(s)	3
BmuI	ACTGGG	1 cut(s)	3
BpiI	GAAGAC	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	589
BpuMI	CCSGG	1 cut(s)	146
BsaJI	CCNNGG	3 cut(s)	145, 283, 705
Bsc4I	CCNNNNNNNGG	3 cut(s)	949, 1002, 1047
Bse1I	ACTGG	2 cut(s)	9, 567
Bse3DI	GCAATG	1 cut(s)	179
BseDI	CCNNGG	3 cut(s)	145, 283, 705
BseGI	GGATG	2 cut(s)	819, 964
BseLI	CCNNNNNNNGG	3 cut(s)	949, 1002, 1047
BseMI	GCAATG	1 cut(s)	179
BseMII	CTCAG	3 cut(s)	93, 789, 1047
BseNI	ACTGG	2 cut(s)	9, 567
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	4 cut(s)	162, 473, 758, 761
BsgI	GTGCAG	2 cut(s)	42, 944
BshFI	GGCC	3 cut(s)	395, 512, 899
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	3 cut(s)	575, 701, 819
BsiSI	CCGG	1 cut(s)	145
BslFI	GGGAC	2 cut(s)	439, 470
BslI	CCNNNNNNNGG	3 cut(s)	949, 1002, 1047
BsmFI	GGGAC	2 cut(s)	439, 470
BsmI	GAATGC	1 cut(s)	594
BsnI	GGCC	3 cut(s)	395, 512, 899
Bsp1286I	GDGCHC	3 cut(s)	575, 701, 819
Bsp143I	GATC	2 cut(s)	379, 988
BspANI	GGCC	3 cut(s)	395, 512, 899
BspCNI	CTCAG	3 cut(s)	94, 790, 1046
BspHI	TCATGA	1 cut(s)	874
BspLI	GGNNCC	2 cut(s)	6, 898
BspPI	GGATC	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	179
BsrI	ACTGG	2 cut(s)	9, 567
BssECI	CCNNGG	3 cut(s)	145, 283, 705
BssMI	GATC	2 cut(s)	379, 988
BssSI	CACGAG	1 cut(s)	240
BssT1I	CCWWGG	2 cut(s)	283, 705
Bst2BI	CACGAG	1 cut(s)	240
Bst4CI	ACNGT	2 cut(s)	20, 1000
Bst6I	CTCTTC	1 cut(s)	251
BstAPI	GCANNNNNTGC	1 cut(s)	931
BstC8I	GCNNGC	3 cut(s)	35, 594, 967
BstDEI	CTNAG	4 cut(s)	102, 798, 835, 1033
BstF5I	GGATG	2 cut(s)	819, 964
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	2 cut(s)	382, 991
BstMBI	GATC	2 cut(s)	379, 988
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 181, 755, 931
BstNSI	RCATGY	3 cut(s)	450, 830, 969
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	765
BstV1I	GCAGC	4 cut(s)	162, 473, 758, 761
BstV2I	GAAGAC	1 cut(s)	54
BsuRI	GGCC	3 cut(s)	395, 512, 899
BtsCI	GGATG	2 cut(s)	819, 964
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	3 cut(s)	759, 795, 927
Cac8I	GCNNGC	3 cut(s)	35, 594, 967
CciI	TCATGA	1 cut(s)	874
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	3 cut(s)	280, 344, 897
CviAII	CATG	5 cut(s)	447, 827, 875, 966, 1008
DdeI	CTNAG	4 cut(s)	102, 798, 835, 1033
DpnI	GATC	2 cut(s)	381, 990
DpnII	GATC	2 cut(s)	379, 988
DraI	TTTAAA	1 cut(s)	730
DrdI	GACNNNNNNGTC	1 cut(s)	351
DseDI	GACNNNNNNGTC	1 cut(s)	351
EaeI	YGGCCR	1 cut(s)	510
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Eco130I	CCWWGG	2 cut(s)	283, 705
Eco32I	GATATC	1 cut(s)	762
Eco47I	GGWCC	2 cut(s)	280, 344
Eco57I	CTGAAG	1 cut(s)	955
EcoO109I	RGGNCCY	1 cut(s)	897
EcoRI	GAATTC	1 cut(s)	325
EcoRV	GATATC	1 cut(s)	762
EcoT14I	CCWWGG	2 cut(s)	283, 705
ErhI	CCWWGG	2 cut(s)	283, 705
FaeI	CATG	5 cut(s)	450, 830, 878, 969, 1011
FalI	AAGNNNNNCTT	2 cut(s)	39, 71
FaqI	GGGAC	2 cut(s)	439, 470
FatI	CATG	5 cut(s)	446, 826, 874, 965, 1007
FbaI	TGATCA	1 cut(s)	988
FblI	GTMKAC	1 cut(s)	831
Fnu4HI	GCNGC	4 cut(s)	176, 462, 747, 750
FokI	GGATG	2 cut(s)	806, 971
Fsp4HI	GCNGC	4 cut(s)	176, 462, 747, 750
FspBI	CTAG	2 cut(s)	291, 537
FspI	TGCGCA	1 cut(s)	43
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	4 cut(s)	176, 462, 747, 750
HaeIII	GGCC	3 cut(s)	395, 512, 899
HapII	CCGG	1 cut(s)	145
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	5 cut(s)	450, 830, 878, 969, 1011
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HincII	GTYRAC	1 cut(s)	832
HindII	GTYRAC	1 cut(s)	832
HindIII	AAGCTT	2 cut(s)	417, 663
HinfI	GANTC	7 cut(s)	98, 118, 224, 313, 515, 620, 871
HpaII	CCGG	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	832
Hpy188I	TCNGA	3 cut(s)	103, 739, 1036
Hpy188III	TCNNGA	4 cut(s)	497, 568, 875, 904
Hpy8I	GTNNAC	1 cut(s)	832
HpyAV	CCTTC	3 cut(s)	634, 910, 1041
HpyCH4III	ACNGT	2 cut(s)	20, 1000
HpyCH4V	TGCA	8 cut(s)	23, 184, 265, 430, 592, 925, 965, 1013
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 181, 755, 931
HpyF3I	CTNAG	4 cut(s)	102, 798, 835, 1033
Hsp92II	CATG	5 cut(s)	450, 830, 878, 969, 1011
HspAI	GCGC	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	988
Kzo9I	GATC	2 cut(s)	379, 988
LpnPI	CCDG	6 cut(s)	22, 47, 158, 491, 548, 756
Lsp1109I	GCAGC	4 cut(s)	162, 473, 758, 761
MaeI	CTAG	2 cut(s)	291, 537
MaeIII	GTNAC	3 cut(s)	109, 122, 598
MalI	GATC	2 cut(s)	381, 990
MboI	GATC	2 cut(s)	379, 988
MboII	GAAGA	4 cut(s)	59, 176, 179, 268
MfeI	CAATTG	1 cut(s)	431
MhlI	GDGCHC	3 cut(s)	575, 701, 819
MluCI	AATT	7 cut(s)	325, 431, 711, 725, 865, 884, 1015
MlyI	GAGTC	2 cut(s)	107, 524
MmeI	TCCRAC	2 cut(s)	847, 936
MseI	TTAA	3 cut(s)	660, 729, 887
MslI	CAYNNNNRTG	2 cut(s)	580, 950
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	1 cut(s)	146
MunI	CAATTG	1 cut(s)	431
Mva1269I	GAATGC	1 cut(s)	594
MwoI	GCNNNNNNNGC	4 cut(s)	39, 181, 755, 931
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	2 cut(s)	379, 988
NlaIII	CATG	5 cut(s)	450, 830, 878, 969, 1011
NlaIV	GGNNCC	2 cut(s)	6, 898
NmeAIII	GCCGAG	1 cut(s)	538
NmuCI	GTSAC	1 cut(s)	122
NsbI	TGCGCA	1 cut(s)	43
NspI	RCATGY	3 cut(s)	450, 830, 969
PaeI	GCATGC	1 cut(s)	969
PagI	TCATGA	1 cut(s)	874
PciI	ACATGT	1 cut(s)	826
PctI	GAATGC	1 cut(s)	594
PfeI	GAWTC	5 cut(s)	118, 224, 313, 620, 871
PkrI	GCNGC	4 cut(s)	177, 463, 748, 751
PleI	GAGTC	2 cut(s)	106, 523
PpsI	GAGTC	2 cut(s)	106, 523
PscI	ACATGT	1 cut(s)	826
PshBI	ATTAAT	1 cut(s)	887
PspN4I	GGNNCC	2 cut(s)	6, 898
PspPI	GGNCC	3 cut(s)	280, 344, 897
RseI	CAYNNNNRTG	2 cut(s)	580, 950
SalI	GTCGAC	1 cut(s)	830
SaqAI	TTAA	3 cut(s)	660, 729, 887
SatI	GCNGC	4 cut(s)	176, 462, 747, 750
Sau3AI	GATC	2 cut(s)	379, 988
Sau96I	GGNCC	3 cut(s)	280, 344, 897
SchI	GAGTC	2 cut(s)	107, 524
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	3 cut(s)	575, 701, 819
SfcI	CTRYAG	1 cut(s)	765
SinI	GGWCC	2 cut(s)	280, 344
SmiMI	CAYNNNNRTG	2 cut(s)	580, 950
SmlI	CTYRAG	1 cut(s)	568
SmoI	CTYRAG	1 cut(s)	568
SphI	GCATGC	1 cut(s)	969
Sse9I	AATT	7 cut(s)	325, 431, 711, 725, 865, 884, 1015
SspMI	CTAG	2 cut(s)	291, 537
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	2 cut(s)	283, 705
TaaI	ACNGT	2 cut(s)	20, 1000
TaqI	TCGA	1 cut(s)	831
TasI	AATT	7 cut(s)	325, 431, 711, 725, 865, 884, 1015
TfiI	GAWTC	5 cut(s)	118, 224, 313, 620, 871
Tru1I	TTAA	3 cut(s)	660, 729, 887
Tru9I	TTAA	3 cut(s)	660, 729, 887
TscAI	CASTG	3 cut(s)	759, 802, 927
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	4 cut(s)	175, 461, 746, 749
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	6 cut(s)	177, 414, 604, 863, 1013, 1083
TspRI	CASTG	3 cut(s)	759, 802, 927
VpaK11BI	GGWCC	2 cut(s)	280, 344
VspI	ATTAAT	1 cut(s)	887
XapI	RAATTY	4 cut(s)	325, 725, 865, 1015
XceI	RCATGY	3 cut(s)	450, 830, 969
XcmI	CCANNNNNNNNNTGG	2 cut(s)	338, 952
XmiI	GTMKAC	1 cut(s)	831
XspI	CTAG	2 cut(s)	291, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.