Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002594

Physical Location & Seq

Genomic Coordinates Forward (+)

26210263 .. 26213442

Gene Structure 3180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g35800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCACCCAGTTTTGACTGTGCAGTTTCAAGCCTGCTTTGCGCAGAAGACAACCTTTTTGATGATAATGATTTTGGGTCTTTGAGGGTTGAGGTTGAGTCTGAGGAGGTTAGTAGGAATCATCAAAGAAACCATAATCAAAACCGGGGCTTTGATCATGATGATGAAGAAGATGGGTTGCCATTGCAGAGTAGTGATGAGTATTTGACTTCTGTTATTGAAAAGGAATCACACCACTTGCCTCGTATGGATTACTTGAAGAGATTGCAAAGCGGGGATTTGGACCTTGGGGCTAGAAATGAGGCTGTTGATTGGATTCGAAAGGCAAATGCCCATTTCAGCTTTGGACCTCTGTGTCAATATCTATCTCTAAGCTACTTGGATCGTTTCCTTTCCGCCTATGAAATACCTAATGGCAAAGCTTGGACTATGCAATTGCTGGCTGTGGCATGTTTGTCCCTTGCAGCCAAGATGGACGAGATTGATGTCCCACTCTCCCTTGATTTGCAGGTGGCCGAGTCAAAATATGTATTTGAGGCTAGAACTATTCAAAGAATGGAGCTACTGGTTTTGAGCACATTGAGATGGAGAATGCAATCAGTTACTCCATTTTCATTCATAGATTCCTTCCTCCTCAAGCTCAATGAGGATCAAATCCCACCTAAAGCTTCAACCTTTAAAGCAGTTCAACTTATTCTGAGCACAACCAAGGGAATTGACTTCTTGGAATTTAAACCTTCAGAGGTTGCAGCAGCAGTGGCCATTTCTGTAGCAGGAGAAAGCAAAGCATTAGATCACACTGAGACAGCAATCTCTGTGCTCATCCAACATGTAGACTTAGAAAAGGAGAGAGTGGTAAAGTGTGTAAATTTGATTCAAGAGGTGGGATTAATGAGTGGGGTCTTCAAGTATGGTAGTGGTTCAGTGCACTCTGTGCCACAAAGCCCCATTGGGGTGTTGGATGTTGCATGTTTCAGCTATAAAAGTGATGATCACACCACAGTTGGGTCATGTGCAAATTCTTTTCATAATGGCTCAGATACCAAAAGAAGGAAGCTAAACAGACCATATGAAGTGGAGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

362

Amino Acids

40.37

Weight (kDa)

5.02

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	69 - 198	5.2e-28	Cyclin, N-terminal domain
Cyclin_C	PF02984	201 - 295	4.1e-09	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22490 AT2G22490 AT5G10440 AT5G10440 AT5G65420 AT5G65420 AT5G65420 AT5G65420
fragaria_vesca	FvH4_1g19970 FvH4_5g35800
malus_domestica	MD01G1037500.v1.1 MD08G1193300.v1.1 MD15G1315400.v1.1 MD15G1381900.v1.1
prunus_persica	Prupe.1G527900_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1
pyrus_communis	pycom01g06540 pycom15g27860
rosa_chinensis	RchiOBHm_Chr2g0111911 RchiOBHm_Chr7g0237481
rosa_laevigata	RLG00000000999 RLG00000017937
rosa_multiflora	Rmu_sc0002923.1_g000002 Rmu_sc0006833.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132000 Rroxscaffold_3G00224140
rosa_rugosa	Rorug02G0177000 Rorug07G0303700
rosa_samantha	Rh2AG229400 Rh2BG242100 Rh2BG242200 Rh2CG233500 Rh2DG237100 Rh7BG430900 Rh7CG478300 Rh7DG447600
rosa_wichuraiana	Rw2G017750 Rw7G038150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	499
AasI	GACNNNNNNGTC	1 cut(s)	354
Acc16I	TGCGCA	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	499
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	834
AciI	CCGC	2 cut(s)	273, 396
AclWI	GGATC	2 cut(s)	390, 657
AcoI	YGGCCR	2 cut(s)	513, 759
AcsI	RAATTY	3 cut(s)	728, 868, 1018
AcuI	CTGAAG	1 cut(s)	723
AdeI	CACNNNGTG	1 cut(s)	934
AfiI	CCNNNNNNNGG	3 cut(s)	952, 1005, 1050
AflIII	ACRYGT	1 cut(s)	829
AgsI	TTSAA	8 cut(s)	30, 221, 259, 551, 672, 689, 878, 907
AluBI	AGCT	8 cut(s)	342, 375, 422, 562, 640, 668, 978, 1057
AluI	AGCT	8 cut(s)	342, 375, 422, 562, 640, 668, 978, 1057
Alw21I	GWGCWC	4 cut(s)	578, 704, 822, 930
Alw26I	GTCTC	1 cut(s)	797
Alw44I	GTGCAC	1 cut(s)	926
AlwI	GGATC	2 cut(s)	390, 657
AoxI	GGCC	2 cut(s)	513, 759
ApaLI	GTGCAC	1 cut(s)	926
ApeKI	GCWGC	3 cut(s)	464, 749, 752
ApoI	RAATTY	3 cut(s)	728, 868, 1018
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
AseI	ATTAAT	1 cut(s)	890
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	2 cut(s)	283, 347
AsuC2I	CCSGG	1 cut(s)	146
AsuII	TTCGAA	1 cut(s)	319
AvaII	GGWCC	2 cut(s)	283, 347
BaeGI	GKGCMC	1 cut(s)	930
BalI	TGGCCA	1 cut(s)	761
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	54, 895
Bbv12I	GWGCWC	4 cut(s)	578, 704, 822, 930
BbvI	GCAGC	3 cut(s)	476, 761, 764
BccI	CCATC	3 cut(s)	167, 466, 579
BclI	TGATCA	2 cut(s)	154, 991
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	797
BfaI	CTAG	2 cut(s)	294, 540
BfmI	CTRYAG	1 cut(s)	768
BfuAI	ACCTGC	1 cut(s)	499
BisI	GCNGC	3 cut(s)	465, 750, 753
BlsI	GCNGC	3 cut(s)	466, 751, 754
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	2 cut(s)	283, 347
BmgT120I	GGNCC	2 cut(s)	283, 347
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	146
BmrI	ACTGGG	1 cut(s)	3
BmuI	ACTGGG	1 cut(s)	3
BpiI	GAAGAC	2 cut(s)	54, 895
Bpu14I	TTCGAA	1 cut(s)	319
BpuEI	CTTGAG	1 cut(s)	620
BpuMI	CCSGG	1 cut(s)	146
BsaJI	CCNNGG	3 cut(s)	145, 286, 708
Bsc4I	CCNNNNNNNGG	3 cut(s)	952, 1005, 1050
Bse1I	ACTGG	2 cut(s)	9, 570
Bse3DI	GCAATG	1 cut(s)	182
BseDI	CCNNGG	3 cut(s)	145, 286, 708
BseGI	GGATG	2 cut(s)	822, 967
BseLI	CCNNNNNNNGG	3 cut(s)	952, 1005, 1050
BseMI	GCAATG	1 cut(s)	182
BseMII	CTCAG	4 cut(s)	93, 689, 792, 1050
BseNI	ACTGG	2 cut(s)	9, 570
BseRI	GAGGAG	2 cut(s)	119, 623
BseSI	GKGCMC	1 cut(s)	930
BseXI	GCAGC	3 cut(s)	476, 761, 764
BsgI	GTGCAG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	515, 761
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	4 cut(s)	578, 704, 822, 930
BsiSI	CCGG	1 cut(s)	145
BslFI	GGGAC	2 cut(s)	442, 473
BslI	CCNNNNNNNGG	3 cut(s)	952, 1005, 1050
BsmAI	GTCTC	1 cut(s)	797
BsmFI	GGGAC	2 cut(s)	442, 473
BsmI	GAATGC	1 cut(s)	597
BsnI	GGCC	2 cut(s)	515, 761
Bsp119I	TTCGAA	1 cut(s)	319
Bsp1286I	GDGCHC	4 cut(s)	578, 704, 822, 930
Bsp143I	GATC	5 cut(s)	154, 382, 649, 793, 991
BspACI	CCGC	2 cut(s)	273, 396
BspANI	GGCC	2 cut(s)	515, 761
BspCNI	CTCAG	4 cut(s)	94, 690, 793, 1049
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	499
BspPI	GGATC	2 cut(s)	390, 657
BspT104I	TTCGAA	1 cut(s)	319
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	182
BsrI	ACTGG	2 cut(s)	9, 570
BssECI	CCNNGG	3 cut(s)	145, 286, 708
BssMI	GATC	5 cut(s)	154, 382, 649, 793, 991
BssT1I	CCWWGG	2 cut(s)	286, 708
Bst4CI	ACNGT	2 cut(s)	20, 1003
Bst6I	CTCTTC	1 cut(s)	254
BstAPI	GCANNNNNTGC	1 cut(s)	934
BstBI	TTCGAA	1 cut(s)	319
BstC8I	GCNNGC	2 cut(s)	35, 441
BstDEI	CTNAG	6 cut(s)	102, 371, 698, 801, 838, 1036
BstF5I	GGATG	2 cut(s)	822, 967
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	5 cut(s)	157, 385, 652, 796, 994
BstMAI	GTCTC	1 cut(s)	797
BstMBI	GATC	5 cut(s)	154, 382, 649, 793, 991
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 758, 934
BstNSI	RCATGY	3 cut(s)	453, 833, 972
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	768
BstSLI	GKGCMC	1 cut(s)	930
BstV1I	GCAGC	3 cut(s)	476, 761, 764
BstV2I	GAAGAC	2 cut(s)	54, 895
BsuRI	GGCC	2 cut(s)	515, 761
BtsCI	GGATG	2 cut(s)	822, 967
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	3 cut(s)	762, 798, 930
BveI	ACCTGC	1 cut(s)	499
Cac8I	GCNNGC	2 cut(s)	35, 441
CciI	TCATGA	1 cut(s)	157
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	283, 347
CviAII	CATG	5 cut(s)	158, 450, 830, 969, 1011
DdeI	CTNAG	6 cut(s)	102, 371, 698, 801, 838, 1036
DpnI	GATC	5 cut(s)	156, 384, 651, 795, 993
DpnII	GATC	5 cut(s)	154, 382, 649, 793, 991
DraI	TTTAAA	2 cut(s)	679, 733
DraIII	CACNNNGTG	1 cut(s)	934
DrdI	GACNNNNNNGTC	1 cut(s)	354
DseDI	GACNNNNNNGTC	1 cut(s)	354
EaeI	YGGCCR	2 cut(s)	513, 759
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
EciI	GGCGGA	1 cut(s)	385
Eco130I	CCWWGG	2 cut(s)	286, 708
Eco47I	GGWCC	2 cut(s)	283, 347
Eco57I	CTGAAG	1 cut(s)	723
EcoT14I	CCWWGG	2 cut(s)	286, 708
ErhI	CCWWGG	2 cut(s)	286, 708
FaeI	CATG	5 cut(s)	161, 453, 833, 972, 1014
FalI	AAGNNNNNCTT	2 cut(s)	39, 71
FaqI	GGGAC	2 cut(s)	442, 473
FatI	CATG	5 cut(s)	157, 449, 829, 968, 1010
FauI	CCCGC	1 cut(s)	266
FauNDI	CATATG	1 cut(s)	1069
FbaI	TGATCA	2 cut(s)	154, 991
FblI	GTMKAC	1 cut(s)	834
Fnu4HI	GCNGC	3 cut(s)	465, 750, 753
FokI	GGATG	2 cut(s)	809, 974
Fsp4HI	GCNGC	3 cut(s)	465, 750, 753
FspBI	CTAG	2 cut(s)	294, 540
FspI	TGCGCA	1 cut(s)	43
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	3 cut(s)	465, 750, 753
HaeIII	GGCC	2 cut(s)	515, 761
HapII	CCGG	1 cut(s)	145
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	5 cut(s)	161, 453, 833, 972, 1014
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HindIII	AAGCTT	2 cut(s)	420, 666
HinfI	GANTC	7 cut(s)	98, 118, 227, 316, 518, 623, 874
HpaII	CCGG	1 cut(s)	145
Hpy166II	GTNNAC	2 cut(s)	835, 928
Hpy188I	TCNGA	4 cut(s)	103, 699, 742, 1039
Hpy188III	TCNNGA	2 cut(s)	158, 878
Hpy8I	GTNNAC	2 cut(s)	835, 928
HpyAV	CCTTC	3 cut(s)	637, 747, 1044
HpyCH4III	ACNGT	2 cut(s)	20, 1003
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 758, 934
HpyF3I	CTNAG	6 cut(s)	102, 371, 698, 801, 838, 1036
Hsp92II	CATG	5 cut(s)	161, 453, 833, 972, 1014
HspAI	GCGC	1 cut(s)	42
Ksp22I	TGATCA	2 cut(s)	154, 991
Kzo9I	GATC	5 cut(s)	154, 382, 649, 793, 991
LmnI	GCTCC	1 cut(s)	559
LpnPI	CCDG	7 cut(s)	22, 47, 158, 425, 494, 551, 759
Lsp1109I	GCAGC	3 cut(s)	476, 761, 764
MaeI	CTAG	2 cut(s)	294, 540
MaeIII	GTNAC	1 cut(s)	601
MalI	GATC	5 cut(s)	156, 384, 651, 795, 993
MboI	GATC	5 cut(s)	154, 382, 649, 793, 991
MboII	GAAGA	5 cut(s)	59, 179, 182, 271, 895
MfeI	CAATTG	1 cut(s)	434
MhlI	GDGCHC	4 cut(s)	578, 704, 822, 930
MlsI	TGGCCA	1 cut(s)	761
MluCI	AATT	5 cut(s)	434, 714, 728, 868, 1018
MluNI	TGGCCA	1 cut(s)	761
MlyI	GAGTC	2 cut(s)	107, 527
MmeI	TCCRAC	2 cut(s)	850, 939
Mox20I	TGGCCA	1 cut(s)	761
MscI	TGGCCA	1 cut(s)	761
MseI	TTAA	3 cut(s)	678, 732, 890
MslI	CAYNNNNRTG	3 cut(s)	162, 583, 953
Msp20I	TGGCCA	1 cut(s)	761
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	1 cut(s)	146
MunI	CAATTG	1 cut(s)	434
Mva1269I	GAATGC	1 cut(s)	597
MwoI	GCNNNNNNNGC	3 cut(s)	39, 758, 934
NciI	CCSGG	1 cut(s)	146
NdeI	CATATG	1 cut(s)	1069
NdeII	GATC	5 cut(s)	154, 382, 649, 793, 991
NlaIII	CATG	5 cut(s)	161, 453, 833, 972, 1014
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	541
NsbI	TGCGCA	1 cut(s)	43
NspI	RCATGY	3 cut(s)	453, 833, 972
NspV	TTCGAA	1 cut(s)	319
PagI	TCATGA	1 cut(s)	157
PaqCI	CACCTGC	1 cut(s)	499
PciI	ACATGT	1 cut(s)	829
PctI	GAATGC	1 cut(s)	597
PfeI	GAWTC	5 cut(s)	118, 227, 316, 623, 874
PkrI	GCNGC	3 cut(s)	466, 751, 754
PleI	GAGTC	2 cut(s)	106, 526
PpsI	GAGTC	2 cut(s)	106, 526
PscI	ACATGT	1 cut(s)	829
PshBI	ATTAAT	1 cut(s)	890
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	283, 347
RseI	CAYNNNNRTG	3 cut(s)	162, 583, 953
SaqAI	TTAA	3 cut(s)	678, 732, 890
SatI	GCNGC	3 cut(s)	465, 750, 753
Sau3AI	GATC	5 cut(s)	154, 382, 649, 793, 991
Sau96I	GGNCC	2 cut(s)	283, 347
SchI	GAGTC	2 cut(s)	107, 527
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	4 cut(s)	578, 704, 822, 930
SfcI	CTRYAG	1 cut(s)	768
SfuI	TTCGAA	1 cut(s)	319
SinI	GGWCC	2 cut(s)	283, 347
SmiMI	CAYNNNNRTG	3 cut(s)	162, 583, 953
SmlI	CTYRAG	1 cut(s)	635
SmoI	CTYRAG	1 cut(s)	635
Sse9I	AATT	5 cut(s)	434, 714, 728, 868, 1018
SsiI	CCGC	2 cut(s)	273, 396
SspMI	CTAG	2 cut(s)	294, 540
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	2 cut(s)	286, 708
TaaI	ACNGT	2 cut(s)	20, 1003
TaqI	TCGA	1 cut(s)	319
TasI	AATT	5 cut(s)	434, 714, 728, 868, 1018
TfiI	GAWTC	5 cut(s)	118, 227, 316, 623, 874
Tru1I	TTAA	3 cut(s)	678, 732, 890
Tru9I	TTAA	3 cut(s)	678, 732, 890
TscAI	CASTG	3 cut(s)	762, 805, 930
TseI	GCWGC	3 cut(s)	464, 749, 752
TspDTI	ATGAA	6 cut(s)	180, 417, 603, 607, 1016, 1086
TspRI	CASTG	3 cut(s)	762, 805, 930
VneI	GTGCAC	1 cut(s)	926
VpaK11BI	GGWCC	2 cut(s)	283, 347
VspI	ATTAAT	1 cut(s)	890
XapI	RAATTY	3 cut(s)	728, 868, 1018
XceI	RCATGY	3 cut(s)	453, 833, 972
XcmI	CCANNNNNNNNNTGG	2 cut(s)	341, 955
XmiI	GTMKAC	1 cut(s)	834
XspI	CTAG	2 cut(s)	294, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.