Rh2BG242100

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002594
Physical Location & Seq
Forward (+)
24272431 .. 24273385
955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG242100.1

Sequence Viewer

Length: 432 bp
ATGGCAGACAGCTTTGACTGTGCCACTTCAAACCTTCTTTGTGCTGAAAACTCTTTTGATGAGAATCAAGACCCCAAATTTAATCATAATGGATCCAAATCTATGGTAGATTTTCCATTACAGAGTGAAGATAGGATTAGTGAAATGGTCAAGAGGGAAAGTGAGCATTTGCCTAGTGATGATTACCTCAAGAGACTGCGCAGTGGGGACTTGAACTTGAGAAGTAGAAGAGAGGCCCTTGATTGGATTTTGAAGGCTCGTGCACATTACAGTTTTGGACCATTGAGTGTGTGTCTATCTATGAACTACTGGGATCGCTTCCTTTCCATCTATCCATTGCCTGTAAGTTTAGAACTTAGACCCAAAGTTTGCATCTTTGTTCTGTTTCATTATTGTATAATGTGTTTTCGTTCATGCTGTTTCTGTTCTTGA

Protein Analysis

143

Amino Acids

16.68

Weight (kDa)

6.06

Isoelectric Point (pI)

63.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 46 - 114 3e-10 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 200
AclWI GGATC 3 cut(s) 87, 100, 321
AcsI RAATTY 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 243
AgsI TTSAA 3 cut(s) 30, 214, 253
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 187
Alw44I GTGCAC 1 cut(s) 261
AlwI GGATC 3 cut(s) 87, 100, 321
AoxI GGCC 1 cut(s) 234
ApaLI GTGCAC 1 cut(s) 261
ApoI RAATTY 1 cut(s) 77
ArsI GACNNNNNNTTYG 2 cut(s) 351, 383
AspLEI GCGC 1 cut(s) 201
AspS9I GGNCC 2 cut(s) 235, 278
AvaII GGWCC 1 cut(s) 278
BaeGI GKGCMC 1 cut(s) 265
BamHI GGATCC 1 cut(s) 92
BauI CACGAG 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 265
BccI CCATC 1 cut(s) 335
BcoDI GTCTC 1 cut(s) 187
BfaI CTAG 1 cut(s) 174
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 2 cut(s) 235, 278
BmiI GGNNCC 1 cut(s) 94
BmrI ACTGGG 1 cut(s) 319
BmsI GCATC 1 cut(s) 381
BmuI ACTGGG 1 cut(s) 319
BpuEI CTTGAG 2 cut(s) 173, 238
BsaBI GATNNNNATC 2 cut(s) 63, 97
Bsc4I CCNNNNNNNGG 1 cut(s) 243
Bse1I ACTGG 1 cut(s) 314
Bse3DI GCAATG 1 cut(s) 335
Bse8I GATNNNNATC 2 cut(s) 63, 97
BseJI GATNNNNATC 2 cut(s) 63, 97
BseLI CCNNNNNNNGG 1 cut(s) 243
BseMI GCAATG 1 cut(s) 335
BseNI ACTGG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 265
BshFI GGCC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 265
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 243
BsmAI GTCTC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 221
BsnI GGCC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 265
Bsp143I GATC 2 cut(s) 92, 313
BspANI GGCC 1 cut(s) 236
BspLI GGNNCC 1 cut(s) 94
BspPI GGATC 3 cut(s) 87, 100, 321
BsrDI GCAATG 1 cut(s) 335
BsrI ACTGG 1 cut(s) 314
BssMI GATC 2 cut(s) 92, 313
BssSI CACGAG 1 cut(s) 258
Bst2BI CACGAG 1 cut(s) 258
Bst4CI ACNGT 2 cut(s) 20, 272
Bst6I CTCTTC 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 356
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 2 cut(s) 95, 316
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 2 cut(s) 92, 313
BstSLI GKGCMC 1 cut(s) 265
BstX2I RGATCY 1 cut(s) 92
BstXI CCANNNNNNTGG 1 cut(s) 103
BstYI RGATCY 1 cut(s) 92
BsuRI GGCC 1 cut(s) 236
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 208
CfoI GCGC 1 cut(s) 201
Cfr13I GGNCC 2 cut(s) 235, 278
CviAII CATG 1 cut(s) 414
CviJI RGCY 3 cut(s) 12, 236, 257
CviKI_1 RGCY 3 cut(s) 12, 236, 257
DdeI CTNAG 1 cut(s) 356
DpnI GATC 2 cut(s) 94, 315
DpnII GATC 2 cut(s) 92, 313
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 278
EcoO109I RGGNCCY 1 cut(s) 235
FaeI CATG 1 cut(s) 417
FaiI YATR 5 cut(s) 87, 104, 302, 398, 415
FaqI GGGAC 1 cut(s) 221
FatI CATG 1 cut(s) 413
FspBI CTAG 1 cut(s) 174
FspI TGCGCA 1 cut(s) 200
GlaI GCGC 1 cut(s) 200
HaeIII GGCC 1 cut(s) 236
HhaI GCGC 1 cut(s) 201
Hin1II CATG 1 cut(s) 417
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HinfI GANTC 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 263
Hpy188III TCNNGA 4 cut(s) 68, 151, 190, 429
Hpy8I GTNNAC 1 cut(s) 263
HpyAV CCTTC 2 cut(s) 44, 247
HpyCH4III ACNGT 2 cut(s) 20, 272
HpyCH4V TGCA 2 cut(s) 263, 372
HpyF3I CTNAG 1 cut(s) 356
Hsp92II CATG 1 cut(s) 417
HspAI GCGC 1 cut(s) 199
Kzo9I GATC 2 cut(s) 92, 313
LpnPI CCDG 2 cut(s) 295, 354
LweI GCATC 1 cut(s) 381
MaeI CTAG 1 cut(s) 174
MalI GATC 2 cut(s) 94, 315
MboI GATC 2 cut(s) 92, 313
MboII GAAGA 2 cut(s) 140, 240
MflI RGATCY 1 cut(s) 92
MhlI GDGCHC 1 cut(s) 265
MluCI AATT 1 cut(s) 77
MnlI CCTC 3 cut(s) 147, 197, 226
MseI TTAA 1 cut(s) 81
NdeII GATC 2 cut(s) 92, 313
NlaIII CATG 1 cut(s) 417
NlaIV GGNNCC 1 cut(s) 94
NsbI TGCGCA 1 cut(s) 200
PfeI GAWTC 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 2 cut(s) 235, 278
PsuI RGATCY 1 cut(s) 92
SaqAI TTAA 1 cut(s) 81
Sau3AI GATC 2 cut(s) 92, 313
Sau96I GGNCC 2 cut(s) 235, 278
SduI GDGCHC 1 cut(s) 265
SetI ASST 3 cut(s) 14, 36, 189
SfaNI GCATC 1 cut(s) 381
SinI GGWCC 1 cut(s) 278
SmlI CTYRAG 2 cut(s) 188, 217
SmoI CTYRAG 2 cut(s) 188, 217
Sse9I AATT 1 cut(s) 77
SspMI CTAG 1 cut(s) 174
TaaI ACNGT 2 cut(s) 20, 272
TasI AATT 1 cut(s) 77
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 1 cut(s) 208
TspDTI ATGAA 3 cut(s) 317, 377, 402
TspRI CASTG 1 cut(s) 208
VneI GTGCAC 1 cut(s) 261
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 1 cut(s) 77
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.