RLG00000000999

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002594
Physical Location & Seq
Reverse (-)
9084568 .. 9086702
2135 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000999

Sequence Viewer

Length: 954 bp
ATGGCACCCAGTTTTGACTGTGCAGTTTCAAGCCTGCTTTGCGCAGAAGACAACCTTTTTGATGATAATGATTTTGGGTCTTTGAGGGTTGAGGTTGAGTCTGAGGAGGTTACTTGGAATCGTCACAGAAACAATAATCAAAACCGGGGCTTTGATAATGATGAAGAAGATGGGCTGCCATTGCAGAGTAGTGATGAGTATTTGGCTTCTATTATTGAAAAGGAATCACACCACTTGCCTCGTGTTGATTACTTGAAGAGATTGCAAAGTGGGGATTTGGACCTTGGGGCTAGAAATGAGGCTGTTGATTGGATTCAAAAGGCAAATTCCCATTTCAGCTTTGGACCTCTGTTGCATTGTGTGTTTTATAGCATCAAAGTGGCCGAGTCAAAATATGTATTTGAGGCTAGAACTATTCAAAGAATGGAGCTACTGGTCTTGAGCACATTGAGATGGAGAATGCAAGCAGTTACTCCAATCTCATTCATAGATTCCTTCCTAGTCAAGCTCAATGAGGACAAAATCCCACTTAAAGCTTCAATCTTTAGAGCAGTTCAACTCATATTGAGCACAACCAAGGGAATTGACTTCTTGGAATTTAAACCTTCAGAGGTCGCAGCAGCAGTGGCCATATCTGTAGCAGGAGAAAGCAAAGCATTAGATGACACTGAGAAAGCAATCTCTATGCTCATCCACCATGCCGACTTAGAAAAGGAGAGAGTGGTAAAGTGTGTAAATTTGATTCAAGATGTTGGATTAATGAGTGGGGCCTTCAAGAATGGTAGTGGTTCAGTGCAGTCTGTGCCACAAAGCCCCATTGGGGTGTTGGATGTTCCATGCTTCAGCTATAAAAGTGATGATCACACCACAGTTGGGTCCTGTGCAAATTCTTTTCATAATGGCTCAGACACCAAAAGAAGGAAGCTAAACAGACCCTATGAAGTGGAGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

318

Amino Acids

35.45

Weight (kDa)

5.18

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_C PF02984 157 - 252 3.7e-10 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 4
AcoI YGGCCR 2 cut(s) 381, 627
AcsI RAATTY 4 cut(s) 325, 596, 736, 886
AcuI CTGAAG 2 cut(s) 591, 826
AfiI CCNNNNNNNGG 3 cut(s) 820, 873, 918
AgsI TTSAA 9 cut(s) 30, 218, 256, 317, 419, 540, 557, 746, 775
AluBI AGCT 6 cut(s) 339, 430, 508, 536, 846, 925
AluI AGCT 6 cut(s) 339, 430, 508, 536, 846, 925
Alw21I GWGCWC 2 cut(s) 446, 572
AoxI GGCC 3 cut(s) 381, 627, 768
ApeKI GCWGC 3 cut(s) 175, 617, 620
ApoI RAATTY 4 cut(s) 325, 596, 736, 886
ArsI GACNNNNNNTTYG 2 cut(s) 41, 73
AseI ATTAAT 1 cut(s) 758
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 4 cut(s) 280, 344, 768, 876
AsuC2I CCSGG 1 cut(s) 146
AvaII GGWCC 3 cut(s) 280, 344, 876
BalI TGGCCA 1 cut(s) 629
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 54
Bbv12I GWGCWC 2 cut(s) 446, 572
BbvI GCAGC 3 cut(s) 162, 629, 632
BccI CCATC 2 cut(s) 164, 447
BclI TGATCA 1 cut(s) 859
BcnI CCSGG 1 cut(s) 146
BfaI CTAG 3 cut(s) 291, 408, 500
BfmI CTRYAG 1 cut(s) 636
BisI GCNGC 3 cut(s) 176, 618, 621
BlsI GCNGC 3 cut(s) 177, 619, 622
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 3 cut(s) 280, 344, 876
BmgT120I GGNCC 4 cut(s) 280, 344, 768, 876
BmiI GGNNCC 3 cut(s) 6, 769, 877
BmrFI CCNGG 1 cut(s) 146
BmrI ACTGGG 1 cut(s) 3
BmsI GCATC 1 cut(s) 381
BmuI ACTGGG 1 cut(s) 3
BpiI GAAGAC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 460
BpuMI CCSGG 1 cut(s) 146
BsaJI CCNNGG 3 cut(s) 145, 283, 576
Bsc4I CCNNNNNNNGG 3 cut(s) 820, 873, 918
Bse1I ACTGG 2 cut(s) 9, 438
Bse3DI GCAATG 1 cut(s) 179
BseDI CCNNGG 3 cut(s) 145, 283, 576
BseGI GGATG 2 cut(s) 690, 835
BseLI CCNNNNNNNGG 3 cut(s) 820, 873, 918
BseMI GCAATG 1 cut(s) 179
BseMII CTCAG 3 cut(s) 93, 660, 918
BseNI ACTGG 2 cut(s) 9, 438
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 3 cut(s) 162, 629, 632
BsgI GTGCAG 2 cut(s) 42, 815
BshFI GGCC 3 cut(s) 383, 629, 770
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 2 cut(s) 446, 572
BsiSI CCGG 1 cut(s) 145
BslI CCNNNNNNNGG 3 cut(s) 820, 873, 918
BsmI GAATGC 1 cut(s) 465
BsnI GGCC 3 cut(s) 383, 629, 770
Bsp1286I GDGCHC 2 cut(s) 446, 572
Bsp143I GATC 1 cut(s) 859
BspANI GGCC 3 cut(s) 383, 629, 770
BspCNI CTCAG 3 cut(s) 94, 661, 917
BspLI GGNNCC 3 cut(s) 6, 769, 877
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 179
BsrI ACTGG 2 cut(s) 9, 438
BssECI CCNNGG 3 cut(s) 145, 283, 576
BssMI GATC 1 cut(s) 859
BssSI CACGAG 1 cut(s) 240
BssT1I CCWWGG 2 cut(s) 283, 576
Bst2BI CACGAG 1 cut(s) 240
Bst4CI ACNGT 2 cut(s) 20, 871
Bst6I CTCTTC 1 cut(s) 251
BstAPI GCANNNNNTGC 1 cut(s) 802
BstC8I GCNNGC 2 cut(s) 35, 465
BstDEI CTNAG 4 cut(s) 102, 669, 706, 904
BstF5I GGATG 2 cut(s) 690, 835
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 1 cut(s) 862
BstMBI GATC 1 cut(s) 859
BstMWI GCNNNNNNNGC 4 cut(s) 39, 181, 626, 802
BstSCI CCNGG 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 636
BstV1I GCAGC 3 cut(s) 162, 629, 632
BstV2I GAAGAC 1 cut(s) 54
BsuRI GGCC 3 cut(s) 383, 629, 770
BtsCI GGATG 2 cut(s) 690, 835
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 3 cut(s) 630, 666, 798
Cac8I GCNNGC 2 cut(s) 35, 465
CfoI GCGC 1 cut(s) 44
Cfr13I GGNCC 4 cut(s) 280, 344, 768, 876
CviAII CATG 2 cut(s) 698, 837
DdeI CTNAG 4 cut(s) 102, 669, 706, 904
DpnI GATC 1 cut(s) 861
DpnII GATC 1 cut(s) 859
DraI TTTAAA 1 cut(s) 601
EaeI YGGCCR 2 cut(s) 381, 627
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Eco130I CCWWGG 2 cut(s) 283, 576
Eco47I GGWCC 3 cut(s) 280, 344, 876
Eco57I CTGAAG 2 cut(s) 591, 826
EcoO109I RGGNCCY 2 cut(s) 768, 876
EcoT14I CCWWGG 2 cut(s) 283, 576
ErhI CCWWGG 2 cut(s) 283, 576
FaeI CATG 2 cut(s) 701, 840
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FatI CATG 2 cut(s) 697, 836
FbaI TGATCA 1 cut(s) 859
Fnu4HI GCNGC 3 cut(s) 176, 618, 621
FokI GGATG 2 cut(s) 677, 842
Fsp4HI GCNGC 3 cut(s) 176, 618, 621
FspBI CTAG 3 cut(s) 291, 408, 500
FspI TGCGCA 1 cut(s) 43
GlaI GCGC 1 cut(s) 43
GluI GCNGC 3 cut(s) 176, 618, 621
HaeIII GGCC 3 cut(s) 383, 629, 770
HapII CCGG 1 cut(s) 145
HhaI GCGC 1 cut(s) 44
Hin1II CATG 2 cut(s) 701, 840
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HindIII AAGCTT 1 cut(s) 534
HinfI GANTC 7 cut(s) 98, 118, 224, 313, 386, 491, 742
HpaII CCGG 1 cut(s) 145
Hpy188I TCNGA 3 cut(s) 103, 610, 907
Hpy188III TCNNGA 3 cut(s) 439, 746, 775
HpyAV CCTTC 4 cut(s) 505, 615, 781, 912
HpyCH4III ACNGT 2 cut(s) 20, 871
HpyCH4V TGCA 7 cut(s) 23, 184, 265, 355, 463, 796, 884
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 181, 626, 802
HpyF3I CTNAG 4 cut(s) 102, 669, 706, 904
Hsp92II CATG 2 cut(s) 701, 840
HspAI GCGC 1 cut(s) 42
Ksp22I TGATCA 1 cut(s) 859
Kzo9I GATC 1 cut(s) 859
LmnI GCTCC 1 cut(s) 427
LpnPI CCDG 6 cut(s) 22, 47, 158, 419, 627, 892
Lsp1109I GCAGC 3 cut(s) 162, 629, 632
LweI GCATC 1 cut(s) 381
MaeI CTAG 3 cut(s) 291, 408, 500
MaeIII GTNAC 3 cut(s) 109, 122, 469
MalI GATC 1 cut(s) 861
MboI GATC 1 cut(s) 859
MboII GAAGA 4 cut(s) 59, 176, 179, 268
MhlI GDGCHC 2 cut(s) 446, 572
MlsI TGGCCA 1 cut(s) 629
MluCI AATT 5 cut(s) 325, 582, 596, 736, 886
MluNI TGGCCA 1 cut(s) 629
MlyI GAGTC 2 cut(s) 107, 395
MmeI TCCRAC 2 cut(s) 733, 807
Mox20I TGGCCA 1 cut(s) 629
MscI TGGCCA 1 cut(s) 629
MseI TTAA 3 cut(s) 531, 600, 758
MslI CAYNNNNRTG 3 cut(s) 377, 451, 821
Msp20I TGGCCA 1 cut(s) 629
MspI CCGG 1 cut(s) 145
MspR9I CCNGG 1 cut(s) 146
Mva1269I GAATGC 1 cut(s) 465
MwoI GCNNNNNNNGC 4 cut(s) 39, 181, 626, 802
NciI CCSGG 1 cut(s) 146
NdeII GATC 1 cut(s) 859
NlaIII CATG 2 cut(s) 701, 840
NlaIV GGNNCC 3 cut(s) 6, 769, 877
NmeAIII GCCGAG 1 cut(s) 409
NmuCI GTSAC 1 cut(s) 122
NsbI TGCGCA 1 cut(s) 43
PctI GAATGC 1 cut(s) 465
PfeI GAWTC 5 cut(s) 118, 224, 313, 491, 742
PkrI GCNGC 3 cut(s) 177, 619, 622
PleI GAGTC 2 cut(s) 106, 394
PpsI GAGTC 2 cut(s) 106, 394
PpuMI RGGWCCY 1 cut(s) 876
PshBI ATTAAT 1 cut(s) 758
Psp5II RGGWCCY 1 cut(s) 876
PspN4I GGNNCC 3 cut(s) 6, 769, 877
PspPI GGNCC 4 cut(s) 280, 344, 768, 876
PspPPI RGGWCCY 1 cut(s) 876
RseI CAYNNNNRTG 3 cut(s) 377, 451, 821
SaqAI TTAA 3 cut(s) 531, 600, 758
SatI GCNGC 3 cut(s) 176, 618, 621
Sau3AI GATC 1 cut(s) 859
Sau96I GGNCC 4 cut(s) 280, 344, 768, 876
SchI GAGTC 2 cut(s) 107, 395
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 2 cut(s) 446, 572
SfaNI GCATC 1 cut(s) 381
SfcI CTRYAG 1 cut(s) 636
SinI GGWCC 3 cut(s) 280, 344, 876
SmiMI CAYNNNNRTG 3 cut(s) 377, 451, 821
SmlI CTYRAG 1 cut(s) 439
SmoI CTYRAG 1 cut(s) 439
Sse9I AATT 5 cut(s) 325, 582, 596, 736, 886
SspMI CTAG 3 cut(s) 291, 408, 500
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 2 cut(s) 283, 576
TaaI ACNGT 2 cut(s) 20, 871
TasI AATT 5 cut(s) 325, 582, 596, 736, 886
TfiI GAWTC 5 cut(s) 118, 224, 313, 491, 742
Tru1I TTAA 3 cut(s) 531, 600, 758
Tru9I TTAA 3 cut(s) 531, 600, 758
TscAI CASTG 3 cut(s) 630, 673, 798
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 3 cut(s) 175, 617, 620
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 4 cut(s) 177, 475, 884, 954
TspRI CASTG 3 cut(s) 630, 673, 798
VpaK11BI GGWCC 3 cut(s) 280, 344, 876
VspI ATTAAT 1 cut(s) 758
XapI RAATTY 4 cut(s) 325, 596, 736, 886
XcmI CCANNNNNNNNNTGG 2 cut(s) 338, 823
XspI CTAG 3 cut(s) 291, 408, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.