Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002594

Physical Location & Seq

Genomic Coordinates Forward (+)

23244280 .. 23246259

Gene Structure 1980 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017937

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCAGACAGCTTTGACTGTGCCACTTCAAACCTTCTTTGTGCTGAAAACTCTTTTGATGAGGTTGATTTTAATGCCTTAGATGATTTTGGGCTCTCCCCTTTAATGCCCCATAAAAACAATGCTTCGCAGAATCAAGACCCCAAATTTAATCATAATAGATCCAAATCTATGGTAGATTTTCTATTACAGAGTGAAGATAGGATTAGTGAAATGGTCAAGAGGGAAAGTGAGCATTTGCCTAGTGATGATTACCTCAAGAGACTGCGCAGTGGGGACTTGAACTTGAGCAGTAGAAGAGAGGCCCTTGATTGGATTTTGAAGGTTGGAGATCCCAAGTATGTATTTGAAGCTAAAACTATAATGAGAATGGAGCTTCTTGTGCTAAGCACCCTAAAGTGGAGAATGCAAGCTTATACTCCATGCTCTTTCATTGATTACTTCCTCAGCAAGATCAGTGATGATCAACATCCACCGACATCATCCATCAGTAGATCAGTGCAACTCATATTGAGCATAATAAGAGGTATTGACTTCTTGGCATTCAGGCCTTCTGAAATTGCTGCAGCAGTTGCACTTTGTATTTCAGGAGAAGTAATGCAAGGAGTGGACATGGAGAAGGCCATTTCTTGTTTCATACATGTAGAAAAGGGAAGAGTGTTGAAGTGTGTTGAACTGATCAAAGATTTGTCATTGATCAGTGGCTCTGCTAATAGAGGAAGCGCTTCAGCTTCATCCATGCCCCAAAGTCCGGTTGGGGTGTTGGATGCTGCATGCTTGAGCTATAAAAGTGACGAATTTACAGTTGGGTCATGTGCAAATTCTTCACATTCTAGTCCAGACATTAAGAGGAGAAAACCAGACAATCCATCTGAAAAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010374 GO:0010440 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

295

Amino Acids

32.66

Weight (kDa)

5.59

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_C	PF02984	140 - 231	1.1e-10	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22490 AT2G22490 AT5G10440 AT5G10440 AT5G65420 AT5G65420 AT5G65420 AT5G65420
fragaria_vesca	FvH4_1g19970 FvH4_5g35800
malus_domestica	MD01G1037500.v1.1 MD08G1193300.v1.1 MD15G1315400.v1.1 MD15G1381900.v1.1
prunus_persica	Prupe.1G527900_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1
pyrus_communis	pycom01g06540 pycom15g27860
rosa_chinensis	RchiOBHm_Chr2g0111911 RchiOBHm_Chr7g0237481
rosa_laevigata	RLG00000000999 RLG00000017937
rosa_multiflora	Rmu_sc0002923.1_g000002 Rmu_sc0006833.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132000 Rroxscaffold_3G00224140
rosa_rugosa	Rorug02G0177000 Rorug07G0303700
rosa_samantha	Rh2AG229400 Rh2BG242100 Rh2BG242200 Rh2CG233500 Rh2DG237100 Rh7BG430900 Rh7CG478300 Rh7DG447600
rosa_wichuraiana	Rw2G017750 Rw7G038150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	269
AclWI	GGATC	2 cut(s)	156, 326
AcsI	RAATTY	3 cut(s)	146, 797, 820
AcuI	CTGAAG	1 cut(s)	711
AfeI	AGCGCT	1 cut(s)	724
AfiI	CCNNNNNNNGG	3 cut(s)	312, 399, 751
AflIII	ACRYGT	1 cut(s)	640
AgsI	TTSAA	6 cut(s)	30, 283, 322, 350, 664, 674
AjuI	GAANNNNNNNTTGG	2 cut(s)	789, 821
AluBI	AGCT	6 cut(s)	12, 353, 376, 413, 731, 783
AluI	AGCT	6 cut(s)	12, 353, 376, 413, 731, 783
Alw26I	GTCTC	1 cut(s)	256
AlwI	GGATC	2 cut(s)	156, 326
Aor51HI	AGCGCT	1 cut(s)	724
AoxI	GGCC	3 cut(s)	303, 548, 621
ApeKI	GCWGC	3 cut(s)	563, 566, 770
ApoI	RAATTY	3 cut(s)	146, 797, 820
Asp700I	GAANNNNTTC	1 cut(s)	724
AspLEI	GCGC	2 cut(s)	270, 725
AspS9I	GGNCC	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	446
BbvI	GCAGC	3 cut(s)	550, 578, 757
BccI	CCATC	2 cut(s)	494, 877
BclI	TGATCA	3 cut(s)	463, 678, 696
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	2 cut(s)	243, 834
BfmI	CTRYAG	1 cut(s)	564
BfoI	RGCGCY	1 cut(s)	726
BisI	GCNGC	3 cut(s)	564, 567, 771
BlpI	GCTNAGC	1 cut(s)	386
BlsI	GCNGC	3 cut(s)	565, 568, 772
BmgT120I	GGNCC	1 cut(s)	304
BmsI	GCATC	1 cut(s)	757
Bpu10I	CCTNAGC	1 cut(s)	446
Bpu1102I	GCTNAGC	1 cut(s)	386
BpuEI	CTTGAG	3 cut(s)	242, 307, 799
BsaBI	GATNNNNATC	2 cut(s)	166, 468
BsaWI	WCCGGW	1 cut(s)	751
Bsc4I	CCNNNNNNNGG	3 cut(s)	312, 399, 751
Bse8I	GATNNNNATC	2 cut(s)	166, 468
BseGI	GGATG	4 cut(s)	469, 482, 734, 772
BseJI	GATNNNNATC	2 cut(s)	166, 468
BseLI	CCNNNNNNNGG	3 cut(s)	312, 399, 751
BseMII	CTCAG	1 cut(s)	460
BseRI	GAGGAG	1 cut(s)	865
BseXI	GCAGC	3 cut(s)	550, 578, 757
BshFI	GGCC	3 cut(s)	305, 550, 623
BsiSI	CCGG	1 cut(s)	752
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	3 cut(s)	312, 399, 751
BsmAI	GTCTC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	2 cut(s)	411, 542
BsnI	GGCC	3 cut(s)	305, 550, 623
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	7 cut(s)	161, 331, 453, 463, 494, 678, 696
Bsp1720I	GCTNAGC	1 cut(s)	386
BspANI	GGCC	3 cut(s)	305, 550, 623
BspCNI	CTCAG	1 cut(s)	459
BspHI	TCATGA	1 cut(s)	881
BspMAI	CTGCAG	1 cut(s)	568
BspPI	GGATC	2 cut(s)	156, 326
BssMI	GATC	7 cut(s)	161, 331, 453, 463, 494, 678, 696
Bst4CI	ACNGT	2 cut(s)	20, 805
Bst6I	CTCTTC	2 cut(s)	292, 649
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstC8I	GCNNGC	2 cut(s)	411, 775
BstDEI	CTNAG	3 cut(s)	79, 386, 446
BstF5I	GGATG	4 cut(s)	469, 482, 734, 772
BstH2I	RGCGCY	1 cut(s)	726
BstHHI	GCGC	2 cut(s)	270, 725
BstKTI	GATC	7 cut(s)	164, 334, 456, 466, 497, 681, 699
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	7 cut(s)	161, 331, 453, 463, 494, 678, 696
BstMWI	GCNNNNNNNGC	2 cut(s)	382, 572
BstNSI	RCATGY	2 cut(s)	644, 777
BstSFI	CTRYAG	1 cut(s)	564
BstV1I	GCAGC	3 cut(s)	550, 578, 757
BstX2I	RGATCY	2 cut(s)	161, 331
BstXI	CCANNNNNNTGG	1 cut(s)	172
BstYI	RGATCY	2 cut(s)	161, 331
BsuRI	GGCC	3 cut(s)	305, 550, 623
BtsCI	GGATG	4 cut(s)	469, 482, 734, 772
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	4 cut(s)	277, 463, 504, 706
Cac8I	GCNNGC	2 cut(s)	411, 775
CciI	TCATGA	1 cut(s)	881
CfoI	GCGC	2 cut(s)	270, 725
Cfr13I	GGNCC	1 cut(s)	304
CviAII	CATG	7 cut(s)	423, 613, 641, 739, 774, 813, 882
DdeI	CTNAG	3 cut(s)	79, 386, 446
DpnI	GATC	7 cut(s)	163, 333, 455, 465, 496, 680, 698
DpnII	GATC	7 cut(s)	161, 331, 453, 463, 494, 678, 696
Eam1104I	CTCTTC	2 cut(s)	292, 649
EarI	CTCTTC	2 cut(s)	292, 649
Eco147I	AGGCCT	1 cut(s)	550
Eco24I	GRGCYC	1 cut(s)	96
Eco47III	AGCGCT	1 cut(s)	724
Eco57I	CTGAAG	1 cut(s)	711
EcoO109I	RGGNCCY	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	7 cut(s)	426, 616, 644, 742, 777, 816, 885
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	7 cut(s)	422, 612, 640, 738, 773, 812, 881
FbaI	TGATCA	3 cut(s)	463, 678, 696
Fnu4HI	GCNGC	3 cut(s)	564, 567, 771
FokI	GGATG	4 cut(s)	456, 469, 721, 779
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	3 cut(s)	564, 567, 771
FspBI	CTAG	2 cut(s)	243, 834
FspI	TGCGCA	1 cut(s)	269
GlaI	GCGC	2 cut(s)	269, 724
GluI	GCNGC	3 cut(s)	564, 567, 771
HaeII	RGCGCY	1 cut(s)	726
HaeIII	GGCC	3 cut(s)	305, 550, 623
HapII	CCGG	1 cut(s)	752
HhaI	GCGC	2 cut(s)	270, 725
Hin1II	CATG	7 cut(s)	426, 616, 644, 742, 777, 816, 885
Hin6I	GCGC	2 cut(s)	268, 723
HinP1I	GCGC	2 cut(s)	268, 723
HindIII	AAGCTT	1 cut(s)	411
HinfI	GANTC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	752
Hpy166II	GTNNAC	1 cut(s)	610
Hpy188I	TCNGA	2 cut(s)	556, 874
Hpy188III	TCNNGA	6 cut(s)	137, 220, 259, 588, 839, 882
Hpy8I	GTNNAC	1 cut(s)	610
HpyAV	CCTTC	4 cut(s)	44, 316, 561, 613
HpyCH4III	ACNGT	2 cut(s)	20, 805
HpyCH4V	TGCA	7 cut(s)	409, 502, 566, 575, 601, 773, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	382, 572
HpyF3I	CTNAG	3 cut(s)	79, 386, 446
Hsp92II	CATG	7 cut(s)	426, 616, 644, 742, 777, 816, 885
HspAI	GCGC	2 cut(s)	268, 723
Ksp22I	TGATCA	3 cut(s)	463, 678, 696
Kzo9I	GATC	7 cut(s)	161, 331, 453, 463, 494, 678, 696
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	5 cut(s)	532, 573, 765, 852, 873
Lsp1109I	GCAGC	3 cut(s)	550, 578, 757
LweI	GCATC	1 cut(s)	757
MaeI	CTAG	2 cut(s)	243, 834
MaeIII	GTNAC	1 cut(s)	791
MalI	GATC	7 cut(s)	163, 333, 455, 465, 496, 680, 698
MboI	GATC	7 cut(s)	161, 331, 453, 463, 494, 678, 696
MboII	GAAGA	4 cut(s)	209, 309, 666, 816
MflI	RGATCY	2 cut(s)	161, 331
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	4 cut(s)	146, 558, 797, 820
MmeI	TCCRAC	2 cut(s)	307, 744
MnlI	CCTC	8 cut(s)	55, 216, 266, 295, 455, 518, 710, 843
MroXI	GAANNNNTTC	1 cut(s)	724
MseI	TTAA	4 cut(s)	72, 104, 150, 846
MspI	CCGG	1 cut(s)	752
Mva1269I	GAATGC	2 cut(s)	411, 542
MwoI	GCNNNNNNNGC	2 cut(s)	382, 572
NdeII	GATC	7 cut(s)	161, 331, 453, 463, 494, 678, 696
NlaIII	CATG	7 cut(s)	426, 616, 644, 742, 777, 816, 885
NmuCI	GTSAC	1 cut(s)	791
NsbI	TGCGCA	1 cut(s)	269
NspI	RCATGY	2 cut(s)	644, 777
PaeI	GCATGC	1 cut(s)	777
PagI	TCATGA	1 cut(s)	881
PceI	AGGCCT	1 cut(s)	550
PciI	ACATGT	1 cut(s)	640
PctI	GAATGC	2 cut(s)	411, 542
PdmI	GAANNNNTTC	1 cut(s)	724
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	3 cut(s)	565, 568, 772
PscI	ACATGT	1 cut(s)	640
PspPI	GGNCC	1 cut(s)	304
PstI	CTGCAG	1 cut(s)	568
PsuI	RGATCY	2 cut(s)	161, 331
SaqAI	TTAA	4 cut(s)	72, 104, 150, 846
SatI	GCNGC	3 cut(s)	564, 567, 771
Sau3AI	GATC	7 cut(s)	161, 331, 453, 463, 494, 678, 696
Sau96I	GGNCC	1 cut(s)	304
SduI	GDGCHC	1 cut(s)	96
SfaNI	GCATC	1 cut(s)	757
SfcI	CTRYAG	1 cut(s)	564
SmlI	CTYRAG	3 cut(s)	257, 286, 778
SmoI	CTYRAG	3 cut(s)	257, 286, 778
SphI	GCATGC	1 cut(s)	777
Sse9I	AATT	4 cut(s)	146, 558, 797, 820
SseBI	AGGCCT	1 cut(s)	550
SspMI	CTAG	2 cut(s)	243, 834
StuI	AGGCCT	1 cut(s)	550
TaaI	ACNGT	2 cut(s)	20, 805
TasI	AATT	4 cut(s)	146, 558, 797, 820
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	4 cut(s)	72, 104, 150, 846
Tru9I	TTAA	4 cut(s)	72, 104, 150, 846
TscAI	CASTG	4 cut(s)	277, 463, 504, 706
TseFI	GTSAC	1 cut(s)	791
TseI	GCWGC	3 cut(s)	563, 566, 770
Tsp45I	GTSAC	1 cut(s)	791
TspDTI	ATGAA	3 cut(s)	421, 625, 723
TspRI	CASTG	4 cut(s)	277, 463, 504, 706
XapI	RAATTY	3 cut(s)	146, 797, 820
XceI	RCATGY	2 cut(s)	644, 777
XcmI	CCANNNNNNNNNTGG	1 cut(s)	752
XmnI	GAANNNNTTC	1 cut(s)	724
XspI	CTAG	2 cut(s)	243, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.