Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002594

Physical Location & Seq

Genomic Coordinates Forward (+)

24426543 .. 24429628

Gene Structure 3086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG229400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCAGACAGCTTTGACTGTGCCACTTCAAACCTTCTTTGTGCTGAAAACTCTTTTGATGAGGTTGATTTTAATGCCTTAGATGATTTTGGGCTCTCCCCTTTAATGCCTCATAAAAACAATGCTTCGCAGAATCAAGACCCCAAATTTAATCATAATAGATCCAAATCTATGGTAGATTTTCCATTACAGAGTGAAGATAGGATTAGTGAAATGGTCAAGAGGGAAAGTGAGCATTTGCCTAGTGATGATTACCTCAAGAGACTGCGCAGTGGGGACTTGAACTTGAGCAGTAGAAGAGAGGCCCTTGATTGGATTTTGAAGGCTCGTGCACATTACAGTTTTGGACCATTGAGTGTGTGTCTATCTATGAACTACTGGGATCGCTTCCTTTCCGTTTATCCATTGCCTAAAGATAAAACTTGGGCAGTGCAACTGCTAGCTGTGGCTTGTTTATCACTGGCCTCCAAAATGGAGGAGACTAATGTACCAGAGACAGTGGATTTACAGGTTGGAGATCCCAAGTATGTATTTGAAGCTAAAACTATAATGAGAATGGAGCTTCTTGTGCTAAGCACCCTAAAGTGGAGAATGCAAGCTTATACTCCATGCTCTTTCATTGATTACTTCCTCAGCAAGATCAGTGATGATCAACATGCACCGACATCATCCATCAGTAGATCAGTGCAACTCATATTGAGCATAATGAGAGGTATTGACTTCTTGGAATTCAGGCCTTCTGAAATTGCTGCAGCAGTGGCACTTTGTATTTCAGGAGAAGTAATGCAAGGAGTGGACATGGAGAAGGCCATTTCTTGTTTCATACATGTAGAAAAGGTAAAAAGGCTGCCCAGAGATGCAAACCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010374 GO:0010440 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

289

Amino Acids

32.82

Weight (kDa)

5.33

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	69 - 198	9.3e-30	Cyclin, N-terminal domain
Cyclin_C	PF02984	202 - 268	6.3e-07	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22490 AT2G22490 AT5G10440 AT5G10440 AT5G65420 AT5G65420 AT5G65420 AT5G65420
fragaria_vesca	FvH4_1g19970 FvH4_5g35800
malus_domestica	MD01G1037500.v1.1 MD08G1193300.v1.1 MD15G1315400.v1.1 MD15G1381900.v1.1
prunus_persica	Prupe.1G527900_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1
pyrus_communis	pycom01g06540 pycom15g27860
rosa_chinensis	RchiOBHm_Chr2g0111911 RchiOBHm_Chr7g0237481
rosa_laevigata	RLG00000000999 RLG00000017937
rosa_multiflora	Rmu_sc0002923.1_g000002 Rmu_sc0006833.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132000 Rroxscaffold_3G00224140
rosa_rugosa	Rorug02G0177000 Rorug07G0303700
rosa_samantha	Rh2AG229400 Rh2BG242100 Rh2BG242200 Rh2CG233500 Rh2DG237100 Rh7BG430900 Rh7CG478300 Rh7DG447600
rosa_wichuraiana	Rw2G017750 Rw7G038150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	269
AclWI	GGATC	3 cut(s)	156, 390, 512
AcsI	RAATTY	2 cut(s)	146, 728
AfaI	GTAC	1 cut(s)	489
AfiI	CCNNNNNNNGG	2 cut(s)	312, 585
AflIII	ACRYGT	1 cut(s)	826
AgsI	TTSAA	4 cut(s)	30, 283, 322, 536
AluBI	AGCT	5 cut(s)	12, 443, 539, 562, 599
AluI	AGCT	5 cut(s)	12, 443, 539, 562, 599
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	3 cut(s)	256, 473, 488
Alw44I	GTGCAC	1 cut(s)	330
AlwI	GGATC	3 cut(s)	156, 390, 512
AoxI	GGCC	4 cut(s)	303, 462, 734, 807
ApaLI	GTGCAC	1 cut(s)	330
ApeKI	GCWGC	3 cut(s)	749, 752, 847
ApoI	RAATTY	2 cut(s)	146, 728
AspLEI	GCGC	1 cut(s)	270
AspS9I	GGNCC	2 cut(s)	304, 347
AsuNHI	GCTAGC	1 cut(s)	439
AvaII	GGWCC	1 cut(s)	347
BaeGI	GKGCMC	1 cut(s)	334
BaeI	ACNNNNGTAYC	2 cut(s)	471, 504
BanII	GRGCYC	1 cut(s)	96
BauI	CACGAG	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	334
BbvCI	CCTCAGC	1 cut(s)	632
BbvI	GCAGC	3 cut(s)	736, 764, 834
BccI	CCATC	1 cut(s)	680
BclI	TGATCA	1 cut(s)	649
BcoDI	GTCTC	3 cut(s)	256, 473, 488
BfaI	CTAG	2 cut(s)	243, 440
BfmI	CTRYAG	1 cut(s)	750
BisI	GCNGC	3 cut(s)	750, 753, 848
BlpI	GCTNAGC	1 cut(s)	572
BlsI	GCNGC	3 cut(s)	751, 754, 849
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	2 cut(s)	304, 347
BmrI	ACTGGG	1 cut(s)	388
BmsI	GCATC	1 cut(s)	847
BmtI	GCTAGC	1 cut(s)	443
BmuI	ACTGGG	1 cut(s)	388
Bpu10I	CCTNAGC	1 cut(s)	632
Bpu1102I	GCTNAGC	1 cut(s)	572
BpuEI	CTTGAG	2 cut(s)	242, 307
BsaBI	GATNNNNATC	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	2 cut(s)	312, 585
Bse1I	ACTGG	2 cut(s)	383, 465
Bse3DI	GCAATG	1 cut(s)	404
Bse8I	GATNNNNATC	1 cut(s)	166
BseGI	GGATG	1 cut(s)	668
BseJI	GATNNNNATC	1 cut(s)	166
BseLI	CCNNNNNNNGG	2 cut(s)	312, 585
BseMI	GCAATG	1 cut(s)	404
BseMII	CTCAG	1 cut(s)	646
BseNI	ACTGG	2 cut(s)	383, 465
BseRI	GAGGAG	1 cut(s)	491
BseSI	GKGCMC	1 cut(s)	334
BseXI	GCAGC	3 cut(s)	736, 764, 834
BshFI	GGCC	4 cut(s)	305, 464, 736, 809
BsiHKAI	GWGCWC	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	2 cut(s)	312, 585
BsmAI	GTCTC	3 cut(s)	256, 473, 488
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	597
BsnI	GGCC	4 cut(s)	305, 464, 736, 809
Bsp1286I	GDGCHC	2 cut(s)	96, 334
Bsp143I	GATC	6 cut(s)	161, 382, 517, 639, 649, 680
Bsp1720I	GCTNAGC	1 cut(s)	572
BspANI	GGCC	4 cut(s)	305, 464, 736, 809
BspCNI	CTCAG	1 cut(s)	645
BspMAI	CTGCAG	1 cut(s)	754
BspOI	GCTAGC	1 cut(s)	443
BspPI	GGATC	3 cut(s)	156, 390, 512
BsrDI	GCAATG	1 cut(s)	404
BsrI	ACTGG	2 cut(s)	383, 465
BssMI	GATC	6 cut(s)	161, 382, 517, 639, 649, 680
BssSI	CACGAG	1 cut(s)	327
Bst2BI	CACGAG	1 cut(s)	327
Bst4CI	ACNGT	3 cut(s)	20, 341, 499
Bst6I	CTCTTC	1 cut(s)	292
BstC8I	GCNNGC	2 cut(s)	441, 597
BstDEI	CTNAG	3 cut(s)	79, 572, 632
BstF5I	GGATG	1 cut(s)	668
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	6 cut(s)	164, 385, 520, 642, 652, 683
BstMAI	GTCTC	3 cut(s)	256, 473, 488
BstMBI	GATC	6 cut(s)	161, 382, 517, 639, 649, 680
BstMWI	GCNNNNNNNGC	2 cut(s)	568, 758
BstNSI	RCATGY	2 cut(s)	659, 830
BstSFI	CTRYAG	1 cut(s)	750
BstSLI	GKGCMC	1 cut(s)	334
BstV1I	GCAGC	3 cut(s)	736, 764, 834
BstX2I	RGATCY	2 cut(s)	161, 517
BstXI	CCANNNNNNTGG	1 cut(s)	172
BstYI	RGATCY	2 cut(s)	161, 517
BsuRI	GGCC	4 cut(s)	305, 464, 736, 809
BtsCI	GGATG	1 cut(s)	668
BtsI	GCAGTG	3 cut(s)	277, 435, 762
BtsIMutI	CAGTG	7 cut(s)	277, 435, 458, 504, 649, 690, 762
Cac8I	GCNNGC	2 cut(s)	441, 597
CfoI	GCGC	1 cut(s)	270
Cfr13I	GGNCC	2 cut(s)	304, 347
Csp6I	GTAC	1 cut(s)	488
CviAII	CATG	4 cut(s)	609, 656, 799, 827
CviQI	GTAC	1 cut(s)	488
DdeI	CTNAG	3 cut(s)	79, 572, 632
DpnI	GATC	6 cut(s)	163, 384, 519, 641, 651, 682
DpnII	GATC	6 cut(s)	161, 382, 517, 639, 649, 680
Eam1104I	CTCTTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	292
Eco147I	AGGCCT	1 cut(s)	736
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	347
EcoO109I	RGGNCCY	1 cut(s)	304
EcoRI	GAATTC	1 cut(s)	728
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	4 cut(s)	612, 659, 802, 830
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	4 cut(s)	608, 655, 798, 826
FbaI	TGATCA	1 cut(s)	649
Fnu4HI	GCNGC	3 cut(s)	750, 753, 848
FokI	GGATG	1 cut(s)	655
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	3 cut(s)	750, 753, 848
FspBI	CTAG	2 cut(s)	243, 440
FspI	TGCGCA	1 cut(s)	269
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	3 cut(s)	750, 753, 848
HaeIII	GGCC	4 cut(s)	305, 464, 736, 809
HhaI	GCGC	1 cut(s)	270
Hin1II	CATG	4 cut(s)	612, 659, 802, 830
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	597
HinfI	GANTC	1 cut(s)	133
Hpy166II	GTNNAC	2 cut(s)	332, 796
Hpy188I	TCNGA	1 cut(s)	742
Hpy188III	TCNNGA	4 cut(s)	137, 220, 259, 774
Hpy8I	GTNNAC	2 cut(s)	332, 796
HpyAV	CCTTC	4 cut(s)	44, 316, 747, 799
HpyCH4III	ACNGT	3 cut(s)	20, 341, 499
HpyCH4V	TGCA	8 cut(s)	332, 433, 595, 659, 688, 752, 787, 860
HpyF10VI	GCNNNNNNNGC	2 cut(s)	568, 758
HpyF3I	CTNAG	3 cut(s)	79, 572, 632
Hsp92II	CATG	4 cut(s)	612, 659, 802, 830
HspAI	GCGC	1 cut(s)	268
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	6 cut(s)	161, 382, 517, 639, 649, 680
LmnI	GCTCC	1 cut(s)	559
LpnPI	CCDG	7 cut(s)	364, 446, 494, 504, 718, 759, 865
Lsp1109I	GCAGC	3 cut(s)	736, 764, 834
LweI	GCATC	1 cut(s)	847
MaeI	CTAG	2 cut(s)	243, 440
MalI	GATC	6 cut(s)	163, 384, 519, 641, 651, 682
MboI	GATC	6 cut(s)	161, 382, 517, 639, 649, 680
MboII	GAAGA	2 cut(s)	209, 309
MflI	RGATCY	2 cut(s)	161, 517
MhlI	GDGCHC	2 cut(s)	96, 334
MluCI	AATT	3 cut(s)	146, 728, 744
MmeI	TCCRAC	1 cut(s)	493
MnlI	CCTC	9 cut(s)	55, 120, 216, 266, 295, 469, 475, 641, 704
MseI	TTAA	3 cut(s)	72, 104, 150
Mva1269I	GAATGC	1 cut(s)	597
MwoI	GCNNNNNNNGC	2 cut(s)	568, 758
NdeII	GATC	6 cut(s)	161, 382, 517, 639, 649, 680
NheI	GCTAGC	1 cut(s)	439
NlaIII	CATG	4 cut(s)	612, 659, 802, 830
NsbI	TGCGCA	1 cut(s)	269
NspI	RCATGY	2 cut(s)	659, 830
PceI	AGGCCT	1 cut(s)	736
PciI	ACATGT	1 cut(s)	826
PctI	GAATGC	1 cut(s)	597
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	3 cut(s)	751, 754, 849
PscI	ACATGT	1 cut(s)	826
PspPI	GGNCC	2 cut(s)	304, 347
PstI	CTGCAG	1 cut(s)	754
PsuI	RGATCY	2 cut(s)	161, 517
RsaI	GTAC	1 cut(s)	489
RsaNI	GTAC	1 cut(s)	488
SaqAI	TTAA	3 cut(s)	72, 104, 150
SatI	GCNGC	3 cut(s)	750, 753, 848
Sau3AI	GATC	6 cut(s)	161, 382, 517, 639, 649, 680
Sau96I	GGNCC	2 cut(s)	304, 347
SduI	GDGCHC	2 cut(s)	96, 334
SfaNI	GCATC	1 cut(s)	847
SfcI	CTRYAG	1 cut(s)	750
SinI	GGWCC	1 cut(s)	347
SmlI	CTYRAG	2 cut(s)	257, 286
SmoI	CTYRAG	2 cut(s)	257, 286
Sse9I	AATT	3 cut(s)	146, 728, 744
SseBI	AGGCCT	1 cut(s)	736
SspMI	CTAG	2 cut(s)	243, 440
StuI	AGGCCT	1 cut(s)	736
TaaI	ACNGT	3 cut(s)	20, 341, 499
TasI	AATT	3 cut(s)	146, 728, 744
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	3 cut(s)	72, 104, 150
Tru9I	TTAA	3 cut(s)	72, 104, 150
TscAI	CASTG	7 cut(s)	277, 435, 465, 504, 649, 690, 762
TseI	GCWGC	3 cut(s)	749, 752, 847
TspDTI	ATGAA	3 cut(s)	386, 607, 811
TspGWI	ACGGA	1 cut(s)	385
TspRI	CASTG	7 cut(s)	277, 435, 465, 504, 649, 690, 762
VneI	GTGCAC	1 cut(s)	330
VpaK11BI	GGWCC	1 cut(s)	347
XapI	RAATTY	2 cut(s)	146, 728
XceI	RCATGY	2 cut(s)	659, 830
XspI	CTAG	2 cut(s)	243, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.