Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002594

Physical Location & Seq

Genomic Coordinates Reverse (-)

6932458 .. 6934207

Gene Structure 1750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06540.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGACTTGGGTCACTTCCCATCAAATTCCCACAAATACAATCAAGGCCCCAATTTTGATCTACGACCGTAGATCCAAATCCATGATAGATTTTTCCTCACATAGTGAAGAGTGGGTGAGTGAAATGGTTAAGAGGGAGAGAGAGCATTTGCCCAGACACGATTATCTAAGGAGACTTCGTTCTGGGGACTTAGAATTGAGCGCTAGAGGGGAGGCCTTTGATTGGATTTGGAAGGCTCATTCCCATTACAATTTTGGGCCATTGTGTGTTTGGCTATCTATGAACTACTTGGATCGCTTCCTTTCGCTTTATGAATTGCCTAGAGGTAGAGCTTGGGCGGTGCAATTGCTAGCTGTGGCTTGTTTATCAATAGCAGCCAAAGTAGAGGAGACTAATGTACCCCAGTCTGTGGATTTACAGGTTGGAGATCCCAAGTATGTGTTTGAAGCAAAAACCATACTAAGAATGGAGCTTCTTGTGATGAGCACCCTAAAATGGAGAATGCAGGCTTGTAGTGCTTACTCTTTCATTGACTACTTCCTCAGCAAGATAAGTGATGATCAATATCCGTTGGCATCGTCCGTATGTAGATCAGAGCAACTCATTTTGAGCACAATCAGAGGTATTGACTTCTTGGAATTCAGGCCTTCTGAAATCGCTGCAGCAGTCGCAATTTGTATTTCAGGAGAAATACAAGCACAAGCAGTTGACATGGATAAGGCCATTTCTTGTTTTGTACATGTAGACAAGGAAAGAGTGTTGAAGTGTGTTGAACTGATCAAAGATTTGTCATTGATCAGAGGTTCCGCCAATCGGGGAAGCACCTCAGGTCCATCGGTGCCCCAAAGTCCGGATGGGGTGTTGGATGCTGCATGCTTGAGCTATAAAAGTGATGAACTGACAGTTGGGTCAAGTGAAAATTCTTCACATAGTAGTCCAGACATTAAGAGGAGGAAACCAGACAATCAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010374 GO:0010440 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

325

Amino Acids

36.6

Weight (kDa)

6.26

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22490 AT2G22490 AT5G10440 AT5G10440 AT5G65420 AT5G65420 AT5G65420 AT5G65420
fragaria_vesca	FvH4_1g19970 FvH4_5g35800
malus_domestica	MD01G1037500.v1.1 MD08G1193300.v1.1 MD15G1315400.v1.1 MD15G1381900.v1.1
prunus_persica	Prupe.1G527900_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1
pyrus_communis	pycom01g06540 pycom15g27860
rosa_chinensis	RchiOBHm_Chr2g0111911 RchiOBHm_Chr7g0237481
rosa_laevigata	RLG00000000999 RLG00000017937
rosa_multiflora	Rmu_sc0002923.1_g000002 Rmu_sc0006833.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132000 Rroxscaffold_3G00224140
rosa_rugosa	Rorug02G0177000 Rorug07G0303700
rosa_samantha	Rh2AG229400 Rh2BG242100 Rh2BG242200 Rh2CG233500 Rh2DG237100 Rh7BG430900 Rh7CG478300 Rh7DG447600
rosa_wichuraiana	Rw2G017750 Rw7G038150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	907
AccB1I	GGYRCC	1 cut(s)	838
AccB7I	CCANNNNNTGG	1 cut(s)	409
AccI	GTMKAC	1 cut(s)	744
AccIII	TCCGGA	1 cut(s)	850
AciI	CCGC	2 cut(s)	338, 807
AclWI	GGATC	3 cut(s)	66, 300, 422
AcsI	RAATTY	3 cut(s)	24, 638, 919
AdeI	CACNNNGTG	1 cut(s)	104
AfaI	GTAC	2 cut(s)	399, 738
AfeI	AGCGCT	1 cut(s)	202
AfiI	CCNNNNNNNGG	5 cut(s)	222, 409, 495, 813, 850
AflIII	ACRYGT	1 cut(s)	739
AgsI	TTSAA	3 cut(s)	446, 763, 773
AhdI	GACNNNNNGTC	1 cut(s)	967
AjuI	GAANNNNNNNTTGG	2 cut(s)	888, 920
AloI	GAACNNNNNNTCC	2 cut(s)	163, 195
AluBI	AGCT	4 cut(s)	332, 353, 472, 882
AluI	AGCT	4 cut(s)	332, 353, 472, 882
Alw21I	GWGCWC	2 cut(s)	488, 614
Alw26I	GTCTC	2 cut(s)	166, 383
AlwI	GGATC	3 cut(s)	66, 300, 422
Aor13HI	TCCGGA	1 cut(s)	850
Aor51HI	AGCGCT	1 cut(s)	202
AoxI	GGCC	5 cut(s)	45, 213, 257, 644, 720
ApeKI	GCWGC	4 cut(s)	374, 659, 662, 869
ApoI	RAATTY	3 cut(s)	24, 638, 919
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	3 cut(s)	46, 257, 830
AsuHPI	GGTGA	1 cut(s)	127
AsuNHI	GCTAGC	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	830
AxyI	CCTNAGG	1 cut(s)	826
BaeGI	GKGCMC	1 cut(s)	843
BaeI	ACNNNNGTAYC	2 cut(s)	381, 414
BanI	GGYRCC	1 cut(s)	838
Bbv12I	GWGCWC	2 cut(s)	488, 614
BbvCI	CCTCAGC	1 cut(s)	542
BbvI	GCAGC	4 cut(s)	386, 646, 674, 856
BccI	CCATC	3 cut(s)	27, 841, 848
BclI	TGATCA	3 cut(s)	559, 777, 795
BcoDI	GTCTC	2 cut(s)	166, 383
BfaI	CTAG	3 cut(s)	204, 321, 350
BfmI	CTRYAG	1 cut(s)	660
BfoI	RGCGCY	1 cut(s)	204
BisI	GCNGC	4 cut(s)	375, 660, 663, 870
BlsI	GCNGC	4 cut(s)	376, 661, 664, 871
Bme18I	GGWCC	1 cut(s)	830
BmeRI	GACNNNNNGTC	1 cut(s)	967
BmgT120I	GGNCC	3 cut(s)	46, 257, 830
BmiI	GGNNCC	3 cut(s)	48, 805, 840
BmrI	ACTGGG	1 cut(s)	397
BmsI	GCATC	2 cut(s)	584, 856
BmtI	GCTAGC	1 cut(s)	353
BmuI	ACTGGG	1 cut(s)	397
BoxI	GACNNNNGTC	1 cut(s)	8
Bpu10I	CCTNAGC	1 cut(s)	542
BpuEI	CTTGAG	1 cut(s)	898
BsaBI	GATNNNNATC	2 cut(s)	76, 564
BsaWI	WCCGGW	1 cut(s)	850
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bsc4I	CCNNNNNNNGG	5 cut(s)	222, 409, 495, 813, 850
Bse1I	ACTGG	1 cut(s)	403
Bse21I	CCTNAGG	1 cut(s)	826
Bse8I	GATNNNNATC	2 cut(s)	76, 564
BseAI	TCCGGA	1 cut(s)	850
BseGI	GGATG	2 cut(s)	859, 871
BseJI	GATNNNNATC	2 cut(s)	76, 564
BseLI	CCNNNNNNNGG	5 cut(s)	222, 409, 495, 813, 850
BseMII	CTCAG	2 cut(s)	556, 840
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	2 cut(s)	401, 964
BseSI	GKGCMC	1 cut(s)	843
BseXI	GCAGC	4 cut(s)	386, 646, 674, 856
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	5 cut(s)	47, 215, 259, 646, 722
BshNI	GGYRCC	1 cut(s)	838
BsiEI	CGRYCG	1 cut(s)	67
BsiHKAI	GWGCWC	2 cut(s)	488, 614
BsiSI	CCGG	1 cut(s)	851
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	5 cut(s)	222, 409, 495, 813, 850
BsmAI	GTCTC	2 cut(s)	166, 383
BsmFI	GGGAC	1 cut(s)	200
BsmI	GAATGC	1 cut(s)	507
BsnI	GGCC	5 cut(s)	47, 215, 259, 646, 722
Bsp1286I	GDGCHC	3 cut(s)	488, 614, 843
Bsp13I	TCCGGA	1 cut(s)	850
Bsp1407I	TGTACA	1 cut(s)	736
Bsp143I	GATC	8 cut(s)	57, 71, 292, 427, 559, 590, 777, 795
BspACI	CCGC	2 cut(s)	338, 807
BspANI	GGCC	5 cut(s)	47, 215, 259, 646, 722
BspCNI	CTCAG	2 cut(s)	555, 839
BspEI	TCCGGA	1 cut(s)	850
BspHI	TCATGA	1 cut(s)	971
BspLI	GGNNCC	3 cut(s)	48, 805, 840
BspMAI	CTGCAG	1 cut(s)	664
BspOI	GCTAGC	1 cut(s)	353
BspPI	GGATC	3 cut(s)	66, 300, 422
BspT107I	GGYRCC	1 cut(s)	838
BsrGI	TGTACA	1 cut(s)	736
BsrI	ACTGG	1 cut(s)	403
BssMI	GATC	8 cut(s)	57, 71, 292, 427, 559, 590, 777, 795
Bst4CI	ACNGT	2 cut(s)	68, 904
Bst6I	CTCTTC	1 cut(s)	102
BstAUI	TGTACA	1 cut(s)	736
BstC8I	GCNNGC	3 cut(s)	351, 507, 874
BstDEI	CTNAG	5 cut(s)	167, 190, 461, 542, 826
BstF5I	GGATG	2 cut(s)	859, 871
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	8 cut(s)	60, 74, 295, 430, 562, 593, 780, 798
BstMAI	GTCTC	2 cut(s)	166, 383
BstMBI	GATC	8 cut(s)	57, 71, 292, 427, 559, 590, 777, 795
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	2 cut(s)	515, 668
BstNSI	RCATGY	2 cut(s)	743, 876
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	660
BstSLI	GKGCMC	1 cut(s)	843
BstV1I	GCAGC	4 cut(s)	386, 646, 674, 856
BstX2I	RGATCY	2 cut(s)	71, 427
BstYI	RGATCY	2 cut(s)	71, 427
Bsu36I	CCTNAGG	1 cut(s)	826
BsuRI	GGCC	5 cut(s)	47, 215, 259, 646, 722
BtsCI	GGATG	2 cut(s)	859, 871
Cac8I	GCNNGC	3 cut(s)	351, 507, 874
CciI	TCATGA	1 cut(s)	971
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	3 cut(s)	46, 257, 830
Csp6I	GTAC	2 cut(s)	398, 737
CviAII	CATG	5 cut(s)	82, 712, 740, 873, 972
CviQI	GTAC	2 cut(s)	398, 737
DdeI	CTNAG	5 cut(s)	167, 190, 461, 542, 826
DpnI	GATC	8 cut(s)	59, 73, 294, 429, 561, 592, 779, 797
DpnII	GATC	8 cut(s)	57, 71, 292, 427, 559, 590, 777, 795
DraIII	CACNNNGTG	1 cut(s)	104
DrdI	GACNNNNNNGTC	1 cut(s)	907
DriI	GACNNNNNGTC	1 cut(s)	967
DseDI	GACNNNNNNGTC	1 cut(s)	907
Eam1104I	CTCTTC	1 cut(s)	102
Eam1105I	GACNNNNNGTC	1 cut(s)	967
EarI	CTCTTC	1 cut(s)	102
EciI	GGCGGA	1 cut(s)	796
Eco147I	AGGCCT	2 cut(s)	215, 646
Eco47I	GGWCC	1 cut(s)	830
Eco47III	AGCGCT	1 cut(s)	202
Eco81I	CCTNAGG	1 cut(s)	826
EcoO109I	RGGNCCY	1 cut(s)	46
EcoRI	GAATTC	1 cut(s)	638
FaeI	CATG	5 cut(s)	85, 715, 743, 876, 975
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	5 cut(s)	81, 711, 739, 872, 971
FbaI	TGATCA	3 cut(s)	559, 777, 795
FblI	GTMKAC	1 cut(s)	744
Fnu4HI	GCNGC	4 cut(s)	375, 660, 663, 870
FokI	GGATG	2 cut(s)	866, 878
Fsp4HI	GCNGC	4 cut(s)	375, 660, 663, 870
FspBI	CTAG	3 cut(s)	204, 321, 350
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	4 cut(s)	375, 660, 663, 870
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	5 cut(s)	47, 215, 259, 646, 722
HapII	CCGG	1 cut(s)	851
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	5 cut(s)	85, 715, 743, 876, 975
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HpaII	CCGG	1 cut(s)	851
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	2 cut(s)	709, 745
Hpy188I	TCNGA	4 cut(s)	595, 620, 652, 800
Hpy188III	TCNNGA	4 cut(s)	684, 851, 938, 972
Hpy8I	GTNNAC	2 cut(s)	709, 745
HpyAV	CCTTC	2 cut(s)	226, 657
HpyCH4III	ACNGT	2 cut(s)	68, 904
HpyCH4V	TGCA	4 cut(s)	343, 505, 662, 872
HpyF10VI	GCNNNNNNNGC	2 cut(s)	515, 668
HpyF3I	CTNAG	5 cut(s)	167, 190, 461, 542, 826
Hsp92II	CATG	5 cut(s)	85, 715, 743, 876, 975
HspAI	GCGC	1 cut(s)	201
Kpn2I	TCCGGA	1 cut(s)	850
Ksp22I	TGATCA	3 cut(s)	559, 777, 795
Kzo9I	GATC	8 cut(s)	57, 71, 292, 427, 559, 590, 777, 795
LmnI	GCTCC	1 cut(s)	469
Lsp1109I	GCAGC	4 cut(s)	386, 646, 674, 856
LweI	GCATC	2 cut(s)	584, 856
MaeI	CTAG	3 cut(s)	204, 321, 350
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	8 cut(s)	59, 73, 294, 429, 561, 592, 779, 797
MboI	GATC	8 cut(s)	57, 71, 292, 427, 559, 590, 777, 795
MboII	GAAGA	2 cut(s)	119, 915
MfeI	CAATTG	1 cut(s)	344
MflI	RGATCY	2 cut(s)	71, 427
MhlI	GDGCHC	3 cut(s)	488, 614, 843
MluCI	AATT	9 cut(s)	24, 51, 194, 250, 314, 344, 638, 672, 919
MmeI	TCCRAC	2 cut(s)	403, 843
MroI	TCCGGA	1 cut(s)	850
MseI	TTAA	2 cut(s)	129, 945
MspI	CCGG	1 cut(s)	851
MunI	CAATTG	1 cut(s)	344
Mva1269I	GAATGC	1 cut(s)	507
MwoI	GCNNNNNNNGC	2 cut(s)	515, 668
NdeII	GATC	8 cut(s)	57, 71, 292, 427, 559, 590, 777, 795
NheI	GCTAGC	1 cut(s)	349
NlaIII	CATG	5 cut(s)	85, 715, 743, 876, 975
NlaIV	GGNNCC	3 cut(s)	48, 805, 840
NmuCI	GTSAC	1 cut(s)	10
NspI	RCATGY	2 cut(s)	743, 876
PaeI	GCATGC	1 cut(s)	876
PagI	TCATGA	1 cut(s)	971
PceI	AGGCCT	2 cut(s)	215, 646
PciI	ACATGT	1 cut(s)	739
PctI	GAATGC	1 cut(s)	507
PflMI	CCANNNNNTGG	1 cut(s)	409
PkrI	GCNGC	4 cut(s)	376, 661, 664, 871
PscI	ACATGT	1 cut(s)	739
PshAI	GACNNNNGTC	1 cut(s)	8
PspN4I	GGNNCC	3 cut(s)	48, 805, 840
PspPI	GGNCC	3 cut(s)	46, 257, 830
PstI	CTGCAG	1 cut(s)	664
PsuI	RGATCY	2 cut(s)	71, 427
RsaI	GTAC	2 cut(s)	399, 738
RsaNI	GTAC	2 cut(s)	398, 737
SaqAI	TTAA	2 cut(s)	129, 945
SatI	GCNGC	4 cut(s)	375, 660, 663, 870
Sau3AI	GATC	8 cut(s)	57, 71, 292, 427, 559, 590, 777, 795
Sau96I	GGNCC	3 cut(s)	46, 257, 830
SduI	GDGCHC	3 cut(s)	488, 614, 843
SfaNI	GCATC	2 cut(s)	584, 856
SfcI	CTRYAG	1 cut(s)	660
SinI	GGWCC	1 cut(s)	830
SmlI	CTYRAG	1 cut(s)	877
SmoI	CTYRAG	1 cut(s)	877
SphI	GCATGC	1 cut(s)	876
Sse9I	AATT	9 cut(s)	24, 51, 194, 250, 314, 344, 638, 672, 919
SseBI	AGGCCT	2 cut(s)	215, 646
SsiI	CCGC	2 cut(s)	338, 807
SspMI	CTAG	3 cut(s)	204, 321, 350
StuI	AGGCCT	2 cut(s)	215, 646
TaaI	ACNGT	2 cut(s)	68, 904
TasI	AATT	9 cut(s)	24, 51, 194, 250, 314, 344, 638, 672, 919
TatI	WGTACW	1 cut(s)	736
Tru1I	TTAA	2 cut(s)	129, 945
Tru9I	TTAA	2 cut(s)	129, 945
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	4 cut(s)	374, 659, 662, 869
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	4 cut(s)	296, 327, 517, 909
TspGWI	ACGGA	2 cut(s)	558, 571
Van91I	CCANNNNNTGG	1 cut(s)	409
VpaK11BI	GGWCC	1 cut(s)	830
XapI	RAATTY	3 cut(s)	24, 638, 919
XceI	RCATGY	2 cut(s)	743, 876
XcmI	CCANNNNNNNNNTGG	4 cut(s)	251, 267, 463, 851
XmiI	GTMKAC	1 cut(s)	744
XspI	CTAG	3 cut(s)	204, 321, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.