Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002594

Physical Location & Seq

Genomic Coordinates Forward (+)

12095397 .. 12098436

Gene Structure 3040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g19970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCAGACAGCTTTGACTGTGCCACTTCAAACCTTCTTTGTGCTGAAAACTCTTTCGATGAGGTTGATTTTAATGGTTTAGATGATTTTGGGCTCTCCCCTCTGATGCCCCATAAAAACAACAATGCTTTCCACAATCAAGACCCCAAATTTAGTCATAATAGATCCAAATCTATGGAAGAGTTCCCATTACAGAGTGAAGATAGGATTAGTGAAATGGTCAAGAGGGAAAGTGAGCATTTGCCTAGTGATGATTACCTCAAGAGACTGCGCAGTGGGGACTTGAACTTGAGCAGTAGAAGACAGGCCGTTGATTGGATTTTGAAGGCTCGTGCACATTACAGTTTTGGACCATTGAGTGTTTGTCTATCTATGAACTACTGGGATCGCTTCCTTTCCATTTATCCATTGCCTAGAGATAAAACTTGGGCAGTGCAACTGCTAGCTGTAGCTTGTTTATCATTGGCCACCAAAATGGAGGAAACTGATGTACCTCAGACCGTGGATTTGCAGGTTGGAGATCCCAAGTATGTCTTTGAAGCTAAAACTATAATGAGAATGGAGCTTCTTGTGCTAAGCACCTTAAAATGGAGAATGCAAGTTTATACACCGTGCTCTTTCATTGATTACTTCCTCAGCAAGATCAATGATGATAAACATCTGCCGACATCATCCATCAGTAGATCAGTGCAAGTCATATTGGGCACAATCAGAGGTATTGACTTCTTGGAATTCAGGCCTTCTGAAATTGCTGCAGCAGTTGCACTTTGTATTTCAGGAGAAGTGATGCAAGGGGTGGACATTGAGAAGGCCATTTCTTGTTTCACACATGTAGAAAAGGGAAGAGTGTTGAAATGTGTTGAGCTGATCAAAGATTTGTCATTGATCAGTGGCTCTGCTAATAGAGGAAGCACCACGGCTTCATCCGTGCCCCAAAGTCCAGTTGGGGTGTTGGATGCTGCGTGCTTGAGCTATAAAAGTGACGAGTTTACAGTTGGGTCATGTGCAAATTCTTCACATTGTAGTCCAGACATTAAGAGGAGGAAACCAGACAATCCATCTGAAAAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010374 GO:0010440 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

358

Amino Acids

39.93

Weight (kDa)

5.68

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	70 - 199	3.6e-29	Cyclin, N-terminal domain
Cyclin_C	PF02984	203 - 298	1e-10	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22490 AT2G22490 AT5G10440 AT5G10440 AT5G65420 AT5G65420 AT5G65420 AT5G65420
fragaria_vesca	FvH4_1g19970 FvH4_5g35800
malus_domestica	MD01G1037500.v1.1 MD08G1193300.v1.1 MD15G1315400.v1.1 MD15G1381900.v1.1
prunus_persica	Prupe.1G527900_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1
pyrus_communis	pycom01g06540 pycom15g27860
rosa_chinensis	RchiOBHm_Chr2g0111911 RchiOBHm_Chr7g0237481
rosa_laevigata	RLG00000000999 RLG00000017937
rosa_multiflora	Rmu_sc0002923.1_g000002 Rmu_sc0006833.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132000 Rroxscaffold_3G00224140
rosa_rugosa	Rorug02G0177000 Rorug07G0303700
rosa_samantha	Rh2AG229400 Rh2BG242100 Rh2BG242200 Rh2CG233500 Rh2DG237100 Rh7BG430900 Rh7CG478300 Rh7DG447600
rosa_wichuraiana	Rw2G017750 Rw7G038150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	502
AclWI	GGATC	3 cut(s)	159, 393, 515
AcoI	YGGCCR	1 cut(s)	465
AcsI	RAATTY	3 cut(s)	149, 731, 1009
AfaI	GTAC	1 cut(s)	492
AfiI	CCNNNNNNNGG	2 cut(s)	315, 588
AflIII	ACRYGT	1 cut(s)	829
AgsI	TTSAA	5 cut(s)	30, 286, 325, 539, 853
AluBI	AGCT	7 cut(s)	12, 446, 452, 542, 565, 865, 972
AluI	AGCT	7 cut(s)	12, 446, 452, 542, 565, 865, 972
Alw21I	GWGCWC	2 cut(s)	337, 617
Alw26I	GTCTC	1 cut(s)	259
Alw44I	GTGCAC	1 cut(s)	333
AlwI	GGATC	3 cut(s)	159, 393, 515
AoxI	GGCC	4 cut(s)	306, 465, 737, 810
ApaLI	GTGCAC	1 cut(s)	333
ApeKI	GCWGC	3 cut(s)	752, 755, 959
ApoI	RAATTY	3 cut(s)	149, 731, 1009
ArsI	GACNNNNNNTTYG	2 cut(s)	490, 522
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	350
AsuNHI	GCTAGC	1 cut(s)	442
AvaII	GGWCC	1 cut(s)	350
BaeGI	GKGCMC	3 cut(s)	337, 707, 933
BaeI	ACNNNNGTAYC	2 cut(s)	474, 507
BalI	TGGCCA	1 cut(s)	467
BanII	GRGCYC	1 cut(s)	96
BauI	CACGAG	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	307
Bbv12I	GWGCWC	2 cut(s)	337, 617
BbvCI	CCTCAGC	1 cut(s)	635
BbvI	GCAGC	3 cut(s)	739, 767, 946
BccI	CCATC	2 cut(s)	683, 1066
BceAI	ACGGC	2 cut(s)	293, 933
BclI	TGATCA	2 cut(s)	867, 885
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	3 cut(s)	246, 414, 443
BfmI	CTRYAG	2 cut(s)	447, 753
BfuAI	ACCTGC	1 cut(s)	502
BisI	GCNGC	3 cut(s)	753, 756, 960
BlpI	GCTNAGC	1 cut(s)	575
BlsI	GCNGC	3 cut(s)	754, 757, 961
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	350
BmrI	ACTGGG	1 cut(s)	391
BmsI	GCATC	3 cut(s)	96, 777, 946
BmtI	GCTAGC	1 cut(s)	446
BmuI	ACTGGG	1 cut(s)	391
BpiI	GAAGAC	1 cut(s)	307
Bpu10I	CCTNAGC	1 cut(s)	635
Bpu1102I	GCTNAGC	1 cut(s)	575
BpuEI	CTTGAG	3 cut(s)	245, 310, 988
BsaBI	GATNNNNATC	2 cut(s)	169, 657
BsaJI	CCNNGG	2 cut(s)	501, 915
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 588
Bse1I	ACTGG	2 cut(s)	386, 941
Bse3DI	GCAATG	1 cut(s)	407
Bse8I	GATNNNNATC	2 cut(s)	169, 657
BseDI	CCNNGG	2 cut(s)	501, 915
BseGI	GGATG	3 cut(s)	671, 923, 961
BseJI	GATNNNNATC	2 cut(s)	169, 657
BseLI	CCNNNNNNNGG	2 cut(s)	315, 588
BseMI	GCAATG	1 cut(s)	407
BseMII	CTCAG	2 cut(s)	509, 649
BseNI	ACTGG	2 cut(s)	386, 941
BseRI	GAGGAG	1 cut(s)	1054
BseSI	GKGCMC	3 cut(s)	337, 707, 933
BseXI	GCAGC	3 cut(s)	739, 767, 946
BshFI	GGCC	4 cut(s)	308, 467, 739, 812
BsiHKAI	GWGCWC	2 cut(s)	337, 617
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	2 cut(s)	315, 588
BsmAI	GTCTC	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	600
BsnI	GGCC	4 cut(s)	308, 467, 739, 812
Bsp1286I	GDGCHC	5 cut(s)	96, 337, 617, 707, 933
Bsp143I	GATC	7 cut(s)	164, 385, 520, 642, 683, 867, 885
Bsp1720I	GCTNAGC	1 cut(s)	575
BspANI	GGCC	4 cut(s)	308, 467, 739, 812
BspCNI	CTCAG	2 cut(s)	508, 648
BspHI	TCATGA	1 cut(s)	1070
BspMAI	CTGCAG	1 cut(s)	757
BspMI	ACCTGC	1 cut(s)	502
BspOI	GCTAGC	1 cut(s)	446
BspPI	GGATC	3 cut(s)	159, 393, 515
BsrDI	GCAATG	1 cut(s)	407
BsrI	ACTGG	2 cut(s)	386, 941
BssECI	CCNNGG	2 cut(s)	501, 915
BssMI	GATC	7 cut(s)	164, 385, 520, 642, 683, 867, 885
BssSI	CACGAG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	330
Bst4CI	ACNGT	5 cut(s)	20, 344, 502, 612, 994
Bst6I	CTCTTC	2 cut(s)	174, 838
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstC8I	GCNNGC	2 cut(s)	444, 964
BstDEI	CTNAG	3 cut(s)	495, 575, 635
BstDSI	CCRYGG	2 cut(s)	501, 915
BstF5I	GGATG	3 cut(s)	671, 923, 961
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	7 cut(s)	167, 388, 523, 645, 686, 870, 888
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	7 cut(s)	164, 385, 520, 642, 683, 867, 885
BstMWI	GCNNNNNNNGC	2 cut(s)	571, 761
BstNSI	RCATGY	1 cut(s)	833
BstSFI	CTRYAG	2 cut(s)	447, 753
BstSLI	GKGCMC	3 cut(s)	337, 707, 933
BstV1I	GCAGC	3 cut(s)	739, 767, 946
BstV2I	GAAGAC	1 cut(s)	307
BstX2I	RGATCY	2 cut(s)	164, 520
BstXI	CCANNNNNNTGG	2 cut(s)	175, 475
BstYI	RGATCY	2 cut(s)	164, 520
BsuRI	GGCC	4 cut(s)	308, 467, 739, 812
BtgI	CCRYGG	2 cut(s)	501, 915
BtsCI	GGATG	3 cut(s)	671, 923, 961
BtsI	GCAGTG	2 cut(s)	280, 438
BtsIMutI	CAGTG	4 cut(s)	280, 438, 693, 895
BveI	ACCTGC	1 cut(s)	502
Cac8I	GCNNGC	2 cut(s)	444, 964
CciI	TCATGA	1 cut(s)	1070
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	491
CviAII	CATG	3 cut(s)	830, 1002, 1071
CviQI	GTAC	1 cut(s)	491
DdeI	CTNAG	3 cut(s)	495, 575, 635
DpnI	GATC	7 cut(s)	166, 387, 522, 644, 685, 869, 887
DpnII	GATC	7 cut(s)	164, 385, 520, 642, 683, 867, 885
EaeI	YGGCCR	1 cut(s)	465
Eam1104I	CTCTTC	2 cut(s)	174, 838
EarI	CTCTTC	2 cut(s)	174, 838
Eco147I	AGGCCT	1 cut(s)	739
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	731
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	3 cut(s)	833, 1005, 1074
FalI	AAGNNNNNCTT	2 cut(s)	518, 550
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	3 cut(s)	829, 1001, 1070
FbaI	TGATCA	2 cut(s)	867, 885
Fnu4HI	GCNGC	3 cut(s)	753, 756, 960
FokI	GGATG	3 cut(s)	658, 910, 968
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	3 cut(s)	753, 756, 960
FspBI	CTAG	3 cut(s)	246, 414, 443
FspI	TGCGCA	1 cut(s)	272
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	3 cut(s)	753, 756, 960
HaeIII	GGCC	4 cut(s)	308, 467, 739, 812
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	3 cut(s)	833, 1005, 1074
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
Hpy166II	GTNNAC	3 cut(s)	335, 799, 990
Hpy188I	TCNGA	5 cut(s)	105, 498, 713, 745, 1063
Hpy188III	TCNNGA	6 cut(s)	140, 223, 262, 777, 1028, 1071
Hpy8I	GTNNAC	3 cut(s)	335, 799, 990
HpyAV	CCTTC	4 cut(s)	44, 319, 750, 802
HpyCH4III	ACNGT	5 cut(s)	20, 344, 502, 612, 994
HpyCH4V	TGCA	9 cut(s)	335, 436, 511, 598, 691, 755, 764, 790, 1007
HpyF10VI	GCNNNNNNNGC	2 cut(s)	571, 761
HpyF3I	CTNAG	3 cut(s)	495, 575, 635
Hsp92II	CATG	3 cut(s)	833, 1005, 1074
HspAI	GCGC	1 cut(s)	271
Ksp22I	TGATCA	2 cut(s)	867, 885
Kzo9I	GATC	7 cut(s)	164, 385, 520, 642, 683, 867, 885
LmnI	GCTCC	1 cut(s)	562
LpnPI	CCDG	8 cut(s)	290, 367, 497, 721, 762, 954, 1041, 1062
Lsp1109I	GCAGC	3 cut(s)	739, 767, 946
LweI	GCATC	3 cut(s)	96, 777, 946
MaeI	CTAG	3 cut(s)	246, 414, 443
MaeIII	GTNAC	1 cut(s)	980
MalI	GATC	7 cut(s)	166, 387, 522, 644, 685, 869, 887
MboI	GATC	7 cut(s)	164, 385, 520, 642, 683, 867, 885
MboII	GAAGA	5 cut(s)	191, 212, 312, 855, 1005
MflI	RGATCY	2 cut(s)	164, 520
MhlI	GDGCHC	5 cut(s)	96, 337, 617, 707, 933
MlsI	TGGCCA	1 cut(s)	467
MluCI	AATT	4 cut(s)	149, 731, 747, 1009
MluNI	TGGCCA	1 cut(s)	467
MmeI	TCCRAC	2 cut(s)	496, 933
Mox20I	TGGCCA	1 cut(s)	467
MscI	TGGCCA	1 cut(s)	467
MseI	TTAA	3 cut(s)	72, 584, 1035
MslI	CAYNNNNRTG	1 cut(s)	473
Msp20I	TGGCCA	1 cut(s)	467
Mva1269I	GAATGC	1 cut(s)	600
MwoI	GCNNNNNNNGC	2 cut(s)	571, 761
NdeII	GATC	7 cut(s)	164, 385, 520, 642, 683, 867, 885
NheI	GCTAGC	1 cut(s)	442
NlaIII	CATG	3 cut(s)	833, 1005, 1074
NmuCI	GTSAC	1 cut(s)	980
NsbI	TGCGCA	1 cut(s)	272
NspI	RCATGY	1 cut(s)	833
PagI	TCATGA	1 cut(s)	1070
PceI	AGGCCT	1 cut(s)	739
PciI	ACATGT	1 cut(s)	829
PctI	GAATGC	1 cut(s)	600
PkrI	GCNGC	3 cut(s)	754, 757, 961
PscI	ACATGT	1 cut(s)	829
PspPI	GGNCC	1 cut(s)	350
PstI	CTGCAG	1 cut(s)	757
PsuI	RGATCY	2 cut(s)	164, 520
RsaI	GTAC	1 cut(s)	492
RsaNI	GTAC	1 cut(s)	491
RseI	CAYNNNNRTG	1 cut(s)	473
SaqAI	TTAA	3 cut(s)	72, 584, 1035
SatI	GCNGC	3 cut(s)	753, 756, 960
Sau3AI	GATC	7 cut(s)	164, 385, 520, 642, 683, 867, 885
Sau96I	GGNCC	1 cut(s)	350
SduI	GDGCHC	5 cut(s)	96, 337, 617, 707, 933
SfaNI	GCATC	3 cut(s)	96, 777, 946
SfcI	CTRYAG	2 cut(s)	447, 753
SinI	GGWCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	3 cut(s)	260, 289, 967
SmoI	CTYRAG	3 cut(s)	260, 289, 967
Sse9I	AATT	4 cut(s)	149, 731, 747, 1009
SseBI	AGGCCT	1 cut(s)	739
SspMI	CTAG	3 cut(s)	246, 414, 443
StuI	AGGCCT	1 cut(s)	739
TaaI	ACNGT	5 cut(s)	20, 344, 502, 612, 994
TaqI	TCGA	1 cut(s)	57
TasI	AATT	4 cut(s)	149, 731, 747, 1009
Tru1I	TTAA	3 cut(s)	72, 584, 1035
Tru9I	TTAA	3 cut(s)	72, 584, 1035
TscAI	CASTG	4 cut(s)	280, 438, 693, 895
TseFI	GTSAC	1 cut(s)	980
TseI	GCWGC	3 cut(s)	752, 755, 959
Tsp45I	GTSAC	1 cut(s)	980
TspDTI	ATGAA	3 cut(s)	389, 610, 912
TspGWI	ACGGA	1 cut(s)	916
TspRI	CASTG	4 cut(s)	280, 438, 693, 895
VneI	GTGCAC	1 cut(s)	333
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	3 cut(s)	149, 731, 1009
XceI	RCATGY	1 cut(s)	833
XcmI	CCANNNNNNNNNTGG	1 cut(s)	941
XspI	CTAG	3 cut(s)	246, 414, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.