Rh2BG242200

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002594
Physical Location & Seq
Forward (+)
24273476 .. 24274409
934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG242200.1

Sequence Viewer

Length: 600 bp
ATGGAGGAGACTGATGTACCACAGACAGTGGATTTACAGGTTGGAGATCCCAAGTATGTATTTGAAGCTAAAACTATAATGAGAATGGAGCTTCTTGTGCTAAGCACCCTAAAGTGGAGAATGCAAGCTTATACTCCATGCTCTTTCATTGATTACTTCCTCAGCAAGATCAGTGATGATCAACATGCACCGACATCATCCATCAGTAGATCAGTGCAACTCATATTGAGCATAATGAGAGGTATTGACTTCTTGGAATTCAGGCCTTCTGAAATTGCTGCAGCAGTGGCACTTTGTATTTCAGGAGAAGTAATGCAAGGAGTGGACATGGAGAAGGCCATTTCTTGTTTCATACATGTAGAAAAGGGAAGAGTGTTGAAGTGTGTTGAACTGATCAAAGATTTGTCATTGATCAGTGGCTCTGCTAATAGAGGAAGCGCTTCAGCTTCATCCGTGCCCCAAAGTCCGGTTGGGGTGTTGGATGCTGCGTGCTTGAGCTATAAAAGTGACGAATTTACAGTTGGGTCATGTGCAAATTCTTCACATTCTAGTCCAGACATTAAGAGGAGAAAACCAGACAATCCATCTGAAACGTCATGA

Protein Analysis

199

Amino Acids

21.73

Weight (kDa)

5.24

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_C PF02984 45 - 140 2.3e-11 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 41
AcsI RAATTY 3 cut(s) 257, 512, 535
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 1 cut(s) 18
AfeI AGCGCT 1 cut(s) 439
AfiI CCNNNNNNNGG 2 cut(s) 114, 466
AflIII ACRYGT 1 cut(s) 355
AgsI TTSAA 3 cut(s) 65, 379, 389
AjuI GAANNNNNNNTTGG 2 cut(s) 504, 536
AluBI AGCT 5 cut(s) 68, 91, 128, 446, 498
AluI AGCT 5 cut(s) 68, 91, 128, 446, 498
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 1 cut(s) 41
Aor51HI AGCGCT 1 cut(s) 439
AoxI GGCC 2 cut(s) 263, 336
ApeKI GCWGC 3 cut(s) 278, 281, 485
ApoI RAATTY 3 cut(s) 257, 512, 535
Asp700I GAANNNNTTC 1 cut(s) 439
AspLEI GCGC 1 cut(s) 440
BaeGI GKGCMC 1 cut(s) 459
BaeI ACNNNNGTAYC 1 cut(s) 33
BbvCI CCTCAGC 1 cut(s) 161
BbvI GCAGC 3 cut(s) 265, 293, 472
BccI CCATC 2 cut(s) 209, 592
BclI TGATCA 3 cut(s) 178, 393, 411
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 1 cut(s) 549
BfmI CTRYAG 1 cut(s) 279
BfoI RGCGCY 1 cut(s) 441
BisI GCNGC 3 cut(s) 279, 282, 486
BlpI GCTNAGC 1 cut(s) 101
BlsI GCNGC 3 cut(s) 280, 283, 487
BmsI GCATC 1 cut(s) 472
Bpu10I CCTNAGC 1 cut(s) 161
Bpu1102I GCTNAGC 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 514
BsaWI WCCGGW 1 cut(s) 466
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 466
BseGI GGATG 3 cut(s) 197, 449, 487
BseLI CCNNNNNNNGG 2 cut(s) 114, 466
BseMII CTCAG 1 cut(s) 175
BseRI GAGGAG 2 cut(s) 20, 580
BseSI GKGCMC 1 cut(s) 459
BseXI GCAGC 3 cut(s) 265, 293, 472
BshFI GGCC 2 cut(s) 265, 338
BsiSI CCGG 1 cut(s) 467
BslI CCNNNNNNNGG 2 cut(s) 114, 466
BsmAI GTCTC 1 cut(s) 2
BsmI GAATGC 1 cut(s) 126
BsnI GGCC 2 cut(s) 265, 338
Bsp1286I GDGCHC 1 cut(s) 459
Bsp143I GATC 6 cut(s) 46, 168, 178, 209, 393, 411
Bsp1720I GCTNAGC 1 cut(s) 101
BspANI GGCC 2 cut(s) 265, 338
BspCNI CTCAG 1 cut(s) 174
BspHI TCATGA 1 cut(s) 596
BspMAI CTGCAG 1 cut(s) 283
BspPI GGATC 1 cut(s) 41
BssMI GATC 6 cut(s) 46, 168, 178, 209, 393, 411
Bst4CI ACNGT 2 cut(s) 28, 520
Bst6I CTCTTC 1 cut(s) 364
BstC8I GCNNGC 2 cut(s) 126, 490
BstDEI CTNAG 2 cut(s) 101, 161
BstF5I GGATG 3 cut(s) 197, 449, 487
BstH2I RGCGCY 1 cut(s) 441
BstHHI GCGC 1 cut(s) 440
BstKTI GATC 6 cut(s) 49, 171, 181, 212, 396, 414
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 6 cut(s) 46, 168, 178, 209, 393, 411
BstMWI GCNNNNNNNGC 2 cut(s) 97, 287
BstNSI RCATGY 2 cut(s) 188, 359
BstSFI CTRYAG 1 cut(s) 279
BstSLI GKGCMC 1 cut(s) 459
BstV1I GCAGC 3 cut(s) 265, 293, 472
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 2 cut(s) 265, 338
BtsCI GGATG 3 cut(s) 197, 449, 487
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 5 cut(s) 33, 178, 219, 291, 421
Cac8I GCNNGC 2 cut(s) 126, 490
CciI TCATGA 1 cut(s) 596
CfoI GCGC 1 cut(s) 440
Csp6I GTAC 1 cut(s) 17
CviAII CATG 6 cut(s) 138, 185, 328, 356, 528, 597
CviJI RGCY 8 cut(s) 68, 91, 128, 265, 338, 420, 446, 498
CviKI_1 RGCY 8 cut(s) 68, 91, 128, 265, 338, 420, 446, 498
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 2 cut(s) 101, 161
DpnI GATC 6 cut(s) 48, 170, 180, 211, 395, 413
DpnII GATC 6 cut(s) 46, 168, 178, 209, 393, 411
Eam1104I CTCTTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 364
Eco147I AGGCCT 1 cut(s) 265
Eco47III AGCGCT 1 cut(s) 439
Eco57I CTGAAG 1 cut(s) 426
EcoRI GAATTC 1 cut(s) 257
FaeI CATG 6 cut(s) 141, 188, 331, 359, 531, 600
FatI CATG 6 cut(s) 137, 184, 327, 355, 527, 596
FbaI TGATCA 3 cut(s) 178, 393, 411
Fnu4HI GCNGC 3 cut(s) 279, 282, 486
FokI GGATG 3 cut(s) 184, 436, 494
Fsp4HI GCNGC 3 cut(s) 279, 282, 486
FspBI CTAG 1 cut(s) 549
GlaI GCGC 1 cut(s) 439
GluI GCNGC 3 cut(s) 279, 282, 486
HaeII RGCGCY 1 cut(s) 441
HaeIII GGCC 2 cut(s) 265, 338
HapII CCGG 1 cut(s) 467
HhaI GCGC 1 cut(s) 440
Hin1II CATG 6 cut(s) 141, 188, 331, 359, 531, 600
Hin6I GCGC 1 cut(s) 438
HinP1I GCGC 1 cut(s) 438
HindIII AAGCTT 1 cut(s) 126
HpaII CCGG 1 cut(s) 467
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 2 cut(s) 271, 589
Hpy188III TCNNGA 3 cut(s) 303, 554, 597
Hpy8I GTNNAC 1 cut(s) 325
HpyAV CCTTC 2 cut(s) 276, 328
HpyCH4III ACNGT 2 cut(s) 28, 520
HpyCH4IV ACGT 1 cut(s) 593
HpyCH4V TGCA 6 cut(s) 124, 188, 217, 281, 316, 533
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 287
HpyF3I CTNAG 2 cut(s) 101, 161
HpySE526I ACGT 1 cut(s) 593
Hsp92II CATG 6 cut(s) 141, 188, 331, 359, 531, 600
HspAI GCGC 1 cut(s) 438
Ksp22I TGATCA 3 cut(s) 178, 393, 411
Kzo9I GATC 6 cut(s) 46, 168, 178, 209, 393, 411
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 6 cut(s) 23, 247, 288, 480, 567, 588
Lsp1109I GCAGC 3 cut(s) 265, 293, 472
LweI GCATC 1 cut(s) 472
MaeI CTAG 1 cut(s) 549
MaeII ACGT 1 cut(s) 593
MaeIII GTNAC 1 cut(s) 506
MalI GATC 6 cut(s) 48, 170, 180, 211, 395, 413
MboI GATC 6 cut(s) 46, 168, 178, 209, 393, 411
MboII GAAGA 2 cut(s) 381, 531
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 459
MluCI AATT 4 cut(s) 257, 273, 512, 535
MmeI TCCRAC 2 cut(s) 22, 459
MnlI CCTC 4 cut(s) 170, 233, 425, 558
MroXI GAANNNNTTC 1 cut(s) 439
MseI TTAA 1 cut(s) 561
MspI CCGG 1 cut(s) 467
Mva1269I GAATGC 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 97, 287
NdeII GATC 6 cut(s) 46, 168, 178, 209, 393, 411
NlaIII CATG 6 cut(s) 141, 188, 331, 359, 531, 600
NmuCI GTSAC 1 cut(s) 506
NspI RCATGY 2 cut(s) 188, 359
PagI TCATGA 1 cut(s) 596
PceI AGGCCT 1 cut(s) 265
PciI ACATGT 1 cut(s) 355
PctI GAATGC 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 439
PkrI GCNGC 3 cut(s) 280, 283, 487
PscI ACATGT 1 cut(s) 355
PstI CTGCAG 1 cut(s) 283
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 561
SatI GCNGC 3 cut(s) 279, 282, 486
Sau3AI GATC 6 cut(s) 46, 168, 178, 209, 393, 411
SduI GDGCHC 1 cut(s) 459
SetI ASST 8 cut(s) 42, 70, 93, 130, 244, 448, 500, 596
SfaNI GCATC 1 cut(s) 472
SfcI CTRYAG 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 493
SmoI CTYRAG 1 cut(s) 493
Sse9I AATT 4 cut(s) 257, 273, 512, 535
SseBI AGGCCT 1 cut(s) 265
SspMI CTAG 1 cut(s) 549
StuI AGGCCT 1 cut(s) 265
TaaI ACNGT 2 cut(s) 28, 520
TaiI ACGT 1 cut(s) 596
TasI AATT 4 cut(s) 257, 273, 512, 535
Tru1I TTAA 1 cut(s) 561
Tru9I TTAA 1 cut(s) 561
TscAI CASTG 5 cut(s) 33, 178, 219, 291, 421
TseFI GTSAC 1 cut(s) 506
TseI GCWGC 3 cut(s) 278, 281, 485
Tsp45I GTSAC 1 cut(s) 506
TspDTI ATGAA 3 cut(s) 136, 340, 438
TspGWI ACGGA 1 cut(s) 442
TspRI CASTG 5 cut(s) 33, 178, 219, 291, 421
XapI RAATTY 3 cut(s) 257, 512, 535
XceI RCATGY 2 cut(s) 188, 359
XcmI CCANNNNNNNNNTGG 1 cut(s) 467
XmnI GAANNNNTTC 1 cut(s) 439
XspI CTAG 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.