Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002594

Physical Location & Seq

Genomic Coordinates Reverse (-)

20400861 .. 20403820

Gene Structure 2960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G196300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCAGACAGCTTTGACTGTGCCAACTCAAACCTTCTTTGTGCAGAAAACTCAGATACCTGCTTTGATGATCTTAATTCTAATACCATAGATGACTTGGGGCTTTTCCCTTCAATGCCCCATATAATCAATAATACCCACAATCAAGACCCCAGTTTTAATCATAATAGATCCAAATCTATGATAGATTTTCCGTTACAGAGTGAAGAAGGGGTTAGTTCAATGGTTAAGAGGGAGAGTGAGCATTTTCCCAGAGACGATTACCTCAAGAGACTGCGCAATGGGGACTTGGACTTAGGCAGTAGAAGAGAGGCCCTTGATTGGATTTCGAAGGCTCGTGCCCATTACAGTTTTGGACCATTGAGTGTTTGTCTATCTATGAACTACTTGGATCGCTTCCTTTCTCTTTATGAATTGCCTAGAGGTAAAGCCTGGGCCGTGCAATTGCTAGCTGTGGCTTGTTTATCAATAGCAGCCAAGGTGGAGGAGACTACTGTACCCCAGTCTGTGGATTTACAGGTTGGAGATCCCAAGTTTGTGTTTGAAGCTAAAACTATACTAAGAATGGAGCTTCTTGTGATGAGCACTCTAAAGTGGAGAATGCAAGCTTGTACTCCCTACTCTTTCATTGACTACTTCCTCAGCAAGATAAGTGATGATCAACATCCGTCAACATCATCTATCTGTAGATCAGAACAACTCATATTGAGCACAATAAGAGGTATTGACTTCTTGGAATTCAGGCCTTCTGAAATTGCTGCAGCAGTGGCAATTTGTATTTCAGGAGAAACACAAGCAGTAGACATTGATAAGGCCATTTCTTGTTTCATGCATGTAGACAAGGTAAGAGTGTTGAAGTGTCTTGAACTGATGAAAGATTTGTCATTGATCAGTGGTTCTGCTAATAGGGGAAGCGCCTCTGCTTCATCCGTACCCCAAAGTCCGGTTGGGGTGTTGGATGCTGCATGCTTGAGCTATAAAAGTGATGAATTTACAGTTGGGTCGTGTGCAAATTCTTCACATAAAAGTCCAGACATTAAGAGGAGGAAACCAGACAATCCGTCTAAAATGGACTCCCAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010374 GO:0010440 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

362

Amino Acids

40.06

Weight (kDa)

5.43

Isoelectric Point (pI)

55.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22490 AT2G22490 AT5G10440 AT5G10440 AT5G65420 AT5G65420 AT5G65420 AT5G65420
fragaria_vesca	FvH4_1g19970 FvH4_5g35800
malus_domestica	MD01G1037500.v1.1 MD08G1193300.v1.1 MD15G1315400.v1.1 MD15G1381900.v1.1
prunus_persica	Prupe.1G527900_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1
pyrus_communis	pycom01g06540 pycom15g27860
rosa_chinensis	RchiOBHm_Chr2g0111911 RchiOBHm_Chr7g0237481
rosa_laevigata	RLG00000000999 RLG00000017937
rosa_multiflora	Rmu_sc0002923.1_g000002 Rmu_sc0006833.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132000 Rroxscaffold_3G00224140
rosa_rugosa	Rorug02G0177000 Rorug07G0303700
rosa_samantha	Rh2AG229400 Rh2BG242100 Rh2BG242200 Rh2CG233500 Rh2DG237100 Rh7BG430900 Rh7CG478300 Rh7DG447600
rosa_wichuraiana	Rw2G017750 Rw7G038150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	278
Acc36I	ACCTGC	1 cut(s)	68
AccB7I	CCANNNNNTGG	1 cut(s)	508
AccI	GTMKAC	2 cut(s)	801, 837
AclWI	GGATC	3 cut(s)	165, 399, 521
AcsI	RAATTY	3 cut(s)	737, 989, 1012
AfaI	GTAC	3 cut(s)	498, 613, 933
AfiI	CCNNNNNNNGG	3 cut(s)	321, 508, 943
AgsI	TTSAA	5 cut(s)	114, 222, 545, 856, 866
AhdI	GACNNNNNGTC	2 cut(s)	1060, 1078
AjnI	CCWGG	1 cut(s)	431
AjuI	GAANNNNNNNTTGG	2 cut(s)	981, 1013
AluBI	AGCT	6 cut(s)	12, 452, 548, 571, 608, 975
AluI	AGCT	6 cut(s)	12, 452, 548, 571, 608, 975
Alw21I	GWGCWC	2 cut(s)	587, 713
Alw26I	GTCTC	3 cut(s)	249, 265, 482
AlwI	GGATC	3 cut(s)	165, 399, 521
AoxI	GGCC	4 cut(s)	312, 435, 743, 813
ApeKI	GCWGC	4 cut(s)	473, 758, 761, 962
ApoI	RAATTY	3 cut(s)	737, 989, 1012
AspLEI	GCGC	2 cut(s)	279, 917
AspS9I	GGNCC	3 cut(s)	313, 356, 435
AsuII	TTCGAA	1 cut(s)	329
AsuNHI	GCTAGC	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	356
BaeGI	GKGCMC	1 cut(s)	343
BaeI	ACNNNNGTAYC	2 cut(s)	480, 513
BauI	CACGAG	1 cut(s)	336
Bbv12I	GWGCWC	2 cut(s)	587, 713
BbvCI	CCTCAGC	1 cut(s)	641
BbvI	GCAGC	4 cut(s)	485, 745, 773, 949
BceAI	ACGGC	1 cut(s)	422
BciT130I	CCWGG	1 cut(s)	433
BclI	TGATCA	2 cut(s)	658, 888
BcoDI	GTCTC	3 cut(s)	249, 265, 482
BfaI	CTAG	2 cut(s)	420, 449
BfmI	CTRYAG	2 cut(s)	685, 759
BfoI	RGCGCY	1 cut(s)	918
BfuAI	ACCTGC	1 cut(s)	68
BisI	GCNGC	4 cut(s)	474, 759, 762, 963
BlsI	GCNGC	4 cut(s)	475, 760, 763, 964
Bme1390I	CCNGG	1 cut(s)	433
Bme18I	GGWCC	1 cut(s)	356
BmeRI	GACNNNNNGTC	2 cut(s)	1060, 1078
BmgT120I	GGNCC	3 cut(s)	313, 356, 435
BmrFI	CCNGG	1 cut(s)	433
BmrI	ACTGGG	3 cut(s)	147, 496, 1072
BmsI	GCATC	1 cut(s)	949
BmtI	GCTAGC	1 cut(s)	452
BmuI	ACTGGG	3 cut(s)	147, 496, 1072
Bpu10I	CCTNAGC	1 cut(s)	641
Bpu14I	TTCGAA	1 cut(s)	329
BpuEI	CTTGAG	2 cut(s)	251, 991
BsaBI	GATNNNNATC	2 cut(s)	175, 663
BsaJI	CCNNGG	2 cut(s)	432, 477
BsaWI	WCCGGW	1 cut(s)	943
Bsc4I	CCNNNNNNNGG	3 cut(s)	321, 508, 943
Bse1I	ACTGG	3 cut(s)	153, 502, 1078
Bse3DI	GCAATG	1 cut(s)	286
Bse8I	GATNNNNATC	2 cut(s)	175, 663
BseBI	CCWGG	1 cut(s)	433
BseDI	CCNNGG	2 cut(s)	432, 477
BseGI	GGATG	3 cut(s)	664, 926, 964
BseJI	GATNNNNATC	2 cut(s)	175, 663
BseLI	CCNNNNNNNGG	3 cut(s)	321, 508, 943
BseMI	GCAATG	1 cut(s)	286
BseMII	CTCAG	2 cut(s)	66, 655
BseNI	ACTGG	3 cut(s)	153, 502, 1078
BseRI	GAGGAG	2 cut(s)	500, 1057
BseSI	GKGCMC	1 cut(s)	343
BseXI	GCAGC	4 cut(s)	485, 745, 773, 949
BsgI	GTGCAG	1 cut(s)	63
BshFI	GGCC	4 cut(s)	314, 437, 745, 815
BsiHKAI	GWGCWC	2 cut(s)	587, 713
BsiSI	CCGG	1 cut(s)	944
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	3 cut(s)	321, 508, 943
BsmAI	GTCTC	3 cut(s)	249, 265, 482
BsmBI	CGTCTC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	606
BsnI	GGCC	4 cut(s)	314, 437, 745, 815
Bsp119I	TTCGAA	1 cut(s)	329
Bsp1286I	GDGCHC	3 cut(s)	343, 587, 713
Bsp143I	GATC	7 cut(s)	70, 170, 391, 526, 658, 689, 888
BspANI	GGCC	4 cut(s)	314, 437, 745, 815
BspCNI	CTCAG	2 cut(s)	65, 654
BspHI	TCATGA	1 cut(s)	1082
BspMAI	CTGCAG	1 cut(s)	763
BspMI	ACCTGC	1 cut(s)	68
BspOI	GCTAGC	1 cut(s)	452
BspPI	GGATC	3 cut(s)	165, 399, 521
BspT104I	TTCGAA	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	286
BsrI	ACTGG	3 cut(s)	153, 502, 1078
BssECI	CCNNGG	2 cut(s)	432, 477
BssMI	GATC	7 cut(s)	70, 170, 391, 526, 658, 689, 888
BssSI	CACGAG	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	477
Bst2BI	CACGAG	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	433
Bst4CI	ACNGT	4 cut(s)	20, 350, 496, 997
Bst6I	CTCTTC	1 cut(s)	301
BstBI	TTCGAA	1 cut(s)	329
BstC8I	GCNNGC	3 cut(s)	450, 606, 967
BstDEI	CTNAG	4 cut(s)	52, 295, 560, 641
BstF5I	GGATG	3 cut(s)	664, 926, 964
BstH2I	RGCGCY	1 cut(s)	918
BstHHI	GCGC	2 cut(s)	279, 917
BstKTI	GATC	7 cut(s)	73, 173, 394, 529, 661, 692, 891
BstMAI	GTCTC	3 cut(s)	249, 265, 482
BstMBI	GATC	7 cut(s)	70, 170, 391, 526, 658, 689, 888
BstMWI	GCNNNNNNNGC	1 cut(s)	767
BstNI	CCWGG	1 cut(s)	433
BstNSI	RCATGY	2 cut(s)	836, 969
BstSCI	CCNGG	1 cut(s)	431
BstSFI	CTRYAG	2 cut(s)	685, 759
BstSLI	GKGCMC	1 cut(s)	343
BstV1I	GCAGC	4 cut(s)	485, 745, 773, 949
BstX2I	RGATCY	2 cut(s)	170, 526
BstYI	RGATCY	2 cut(s)	170, 526
BsuRI	GGCC	4 cut(s)	314, 437, 745, 815
BtsCI	GGATG	3 cut(s)	664, 926, 964
BtsI	GCAGTG	1 cut(s)	771
BtsIMutI	CAGTG	2 cut(s)	771, 898
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	3 cut(s)	450, 606, 967
CciI	TCATGA	1 cut(s)	1082
CfoI	GCGC	2 cut(s)	279, 917
Cfr13I	GGNCC	3 cut(s)	313, 356, 435
Csp6I	GTAC	3 cut(s)	497, 612, 932
CviAII	CATG	4 cut(s)	829, 833, 966, 1083
CviQI	GTAC	3 cut(s)	497, 612, 932
DdeI	CTNAG	4 cut(s)	52, 295, 560, 641
DpnI	GATC	7 cut(s)	72, 172, 393, 528, 660, 691, 890
DpnII	GATC	7 cut(s)	70, 170, 391, 526, 658, 689, 888
DriI	GACNNNNNGTC	2 cut(s)	1060, 1078
Eam1104I	CTCTTC	1 cut(s)	301
Eam1105I	GACNNNNNGTC	2 cut(s)	1060, 1078
EarI	CTCTTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	477
Eco147I	AGGCCT	1 cut(s)	745
Eco47I	GGWCC	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	313
EcoRI	GAATTC	1 cut(s)	737
EcoRII	CCWGG	1 cut(s)	431
EcoT14I	CCWWGG	1 cut(s)	477
EcoT22I	ATGCAT	1 cut(s)	834
ErhI	CCWWGG	1 cut(s)	477
Esp3I	CGTCTC	1 cut(s)	249
FaeI	CATG	4 cut(s)	832, 836, 969, 1086
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	4 cut(s)	828, 832, 965, 1082
FbaI	TGATCA	2 cut(s)	658, 888
FblI	GTMKAC	2 cut(s)	801, 837
Fnu4HI	GCNGC	4 cut(s)	474, 759, 762, 963
FokI	GGATG	3 cut(s)	651, 913, 971
Fsp4HI	GCNGC	4 cut(s)	474, 759, 762, 963
FspBI	CTAG	2 cut(s)	420, 449
FspI	TGCGCA	1 cut(s)	278
GlaI	GCGC	2 cut(s)	278, 916
GluI	GCNGC	4 cut(s)	474, 759, 762, 963
HaeII	RGCGCY	1 cut(s)	918
HaeIII	GGCC	4 cut(s)	314, 437, 745, 815
HapII	CCGG	1 cut(s)	944
HhaI	GCGC	2 cut(s)	279, 917
Hin1II	CATG	4 cut(s)	832, 836, 969, 1086
Hin6I	GCGC	2 cut(s)	277, 915
HinP1I	GCGC	2 cut(s)	277, 915
HincII	GTYRAC	1 cut(s)	672
HindII	GTYRAC	1 cut(s)	672
HindIII	AAGCTT	1 cut(s)	606
HinfI	GANTC	1 cut(s)	1073
HpaII	CCGG	1 cut(s)	944
Hpy166II	GTNNAC	3 cut(s)	672, 802, 838
Hpy188I	TCNGA	3 cut(s)	55, 694, 751
Hpy188III	TCNNGA	6 cut(s)	146, 268, 783, 863, 1031, 1083
Hpy8I	GTNNAC	3 cut(s)	672, 802, 838
HpyAV	CCTTC	5 cut(s)	44, 120, 203, 325, 756
HpyCH4III	ACNGT	4 cut(s)	20, 350, 496, 997
HpyCH4V	TGCA	7 cut(s)	44, 442, 604, 761, 832, 965, 1010
HpyF10VI	GCNNNNNNNGC	1 cut(s)	767
HpyF3I	CTNAG	4 cut(s)	52, 295, 560, 641
Hsp92II	CATG	4 cut(s)	832, 836, 969, 1086
HspAI	GCGC	2 cut(s)	277, 915
Ksp22I	TGATCA	2 cut(s)	658, 888
Kzo9I	GATC	7 cut(s)	70, 170, 391, 526, 658, 689, 888
LmnI	GCTCC	1 cut(s)	568
Lsp1109I	GCAGC	4 cut(s)	485, 745, 773, 949
LweI	GCATC	1 cut(s)	949
MaeI	CTAG	2 cut(s)	420, 449
MaeIII	GTNAC	1 cut(s)	195
MalI	GATC	7 cut(s)	72, 172, 393, 528, 660, 691, 890
MboI	GATC	7 cut(s)	70, 170, 391, 526, 658, 689, 888
MboII	GAAGA	3 cut(s)	218, 318, 1008
MfeI	CAATTG	1 cut(s)	443
MflI	RGATCY	2 cut(s)	170, 526
MhlI	GDGCHC	3 cut(s)	343, 587, 713
MluCI	AATT	8 cut(s)	76, 413, 443, 737, 753, 771, 989, 1012
MlyI	GAGTC	1 cut(s)	1067
MmeI	TCCRAC	2 cut(s)	502, 936
Mph1103I	ATGCAT	1 cut(s)	834
MseI	TTAA	4 cut(s)	75, 159, 228, 1038
MspI	CCGG	1 cut(s)	944
MspR9I	CCNGG	1 cut(s)	433
MunI	CAATTG	1 cut(s)	443
Mva1269I	GAATGC	1 cut(s)	606
MvaI	CCWGG	1 cut(s)	433
MwoI	GCNNNNNNNGC	1 cut(s)	767
NdeII	GATC	7 cut(s)	70, 170, 391, 526, 658, 689, 888
NheI	GCTAGC	1 cut(s)	448
NlaIII	CATG	4 cut(s)	832, 836, 969, 1086
NsbI	TGCGCA	1 cut(s)	278
NsiI	ATGCAT	1 cut(s)	834
NspI	RCATGY	2 cut(s)	836, 969
NspV	TTCGAA	1 cut(s)	329
PaeI	GCATGC	1 cut(s)	969
PagI	TCATGA	1 cut(s)	1082
PceI	AGGCCT	1 cut(s)	745
PctI	GAATGC	1 cut(s)	606
PflMI	CCANNNNNTGG	1 cut(s)	508
PkrI	GCNGC	4 cut(s)	475, 760, 763, 964
PleI	GAGTC	1 cut(s)	1067
PpsI	GAGTC	1 cut(s)	1067
Psp6I	CCWGG	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	431
PspPI	GGNCC	3 cut(s)	313, 356, 435
PstI	CTGCAG	1 cut(s)	763
PsuI	RGATCY	2 cut(s)	170, 526
RsaI	GTAC	3 cut(s)	498, 613, 933
RsaNI	GTAC	3 cut(s)	497, 612, 932
SaqAI	TTAA	4 cut(s)	75, 159, 228, 1038
SatI	GCNGC	4 cut(s)	474, 759, 762, 963
Sau3AI	GATC	7 cut(s)	70, 170, 391, 526, 658, 689, 888
Sau96I	GGNCC	3 cut(s)	313, 356, 435
SchI	GAGTC	1 cut(s)	1067
ScrFI	CCNGG	1 cut(s)	433
SduI	GDGCHC	3 cut(s)	343, 587, 713
SfaNI	GCATC	1 cut(s)	949
SfcI	CTRYAG	2 cut(s)	685, 759
SfuI	TTCGAA	1 cut(s)	329
SinI	GGWCC	1 cut(s)	356
SmlI	CTYRAG	2 cut(s)	266, 970
SmoI	CTYRAG	2 cut(s)	266, 970
SphI	GCATGC	1 cut(s)	969
Sse9I	AATT	8 cut(s)	76, 413, 443, 737, 753, 771, 989, 1012
SseBI	AGGCCT	1 cut(s)	745
SspMI	CTAG	2 cut(s)	420, 449
StuI	AGGCCT	1 cut(s)	745
StyD4I	CCNGG	1 cut(s)	431
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	4 cut(s)	20, 350, 496, 997
TaqI	TCGA	1 cut(s)	329
TasI	AATT	8 cut(s)	76, 413, 443, 737, 753, 771, 989, 1012
TatI	WGTACW	1 cut(s)	611
Tru1I	TTAA	4 cut(s)	75, 159, 228, 1038
Tru9I	TTAA	4 cut(s)	75, 159, 228, 1038
TscAI	CASTG	2 cut(s)	771, 898
TseI	GCWGC	4 cut(s)	473, 758, 761, 962
TspDTI	ATGAA	7 cut(s)	395, 426, 616, 817, 887, 915, 1002
TspGWI	ACGGA	4 cut(s)	183, 657, 919, 1050
TspRI	CASTG	2 cut(s)	771, 898
Van91I	CCANNNNNTGG	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	356
XapI	RAATTY	3 cut(s)	737, 989, 1012
XceI	RCATGY	2 cut(s)	836, 969
XcmI	CCANNNNNNNNNTGG	3 cut(s)	94, 350, 944
XmiI	GTMKAC	2 cut(s)	801, 837
XspI	CTAG	2 cut(s)	420, 449
Zsp2I	ATGCAT	1 cut(s)	834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.