Rorug02G0177000

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002594
Physical Location & Seq
Forward (+)
16264004 .. 16265811
1808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0177000.1

Sequence Viewer

Length: 1407 bp
ATGATTCCTTTTGACTCTGTTCCTGCTGCTTACTGGGCTTCCTTGAATCTACGACTAATTGCGGTAAATGATAGAGGTACTCTTCTTCCAAATATCTGGCTTCTTGGTTCTTTACATATCTCTTCTCCTACACTAGTGCTCTCTGCAGATCAACACATTACTATTCAGATTACTTTGGAAGGCACTCTTACTCAACTATCTTGTGTCTACGCGGCTACAACTGCACTAAAACGTCGCAAATTATGGTCGGATTTATTACTTCTTCGTCAACAGACCACCATTCCATGGATGGCAATAGGAGACTTTAATGCAGTATTGGGGGCTCATGAGGCCATGAATGGGAATATCCCTAAGCGTTCATCTTGTGAGGATTTTCGCGATGCCACAGAACGATGTCATTTCACCCATCTTGATACTTCAGGGGCTTTCTTTACATGGTCTAAAGGGCGCGGTCGGAAGCACTTGGAACGACGGCTTGATCGCTCCTTATGTGATGATGGCTGGTTTGAGGCTTGGCCATTTACCAACTGTATAGCTCTTCCCCGAGTGGTTTCGGATCATAATGGTTTACTTTTTTCAGCCGGTAAGTCTGTACCAGGGGGTCCTAAACCTTTTCGTTTCCAATCTATGTGGCTTCTCCACTCTTCTTTCAAGGAGTTGGTGGCGAATTGTTGGTCGACCACCAGGCCAGCTGGTTGTCCCATGTATGTGACGCTACAAAAATTAAAGGCCTTGAAGTTATGCCTTAAGCAATGGAACACCACGGTATTTGGGAATGTTCATAGAAACTTGGAGTTGGCCCGTGCTAAGTTGACTGCTATTCAACAAGATATTGCTTCTAATGGTTCTACTGATATTAACTTTGAGGCTGAAGTTCTTGCAAAGGCCGATGTTCTTAATGCGGTTAAGCATCAGGAGACTTTTTGGAGGAATAGAGCTCGTGTTAAATGGTTTACCGAGGGGGATAAATGCTCAAATTTTTTCCATGCTTATGCCCGCAATAAGGCAAGGCGCTCTTTAATGCATTGCTTACAGGTTGGGGGAAATCTTCTTACTGATCCACAAGATATTGCTAATCATGTTGTTGAGTTTTATAAATCGTTATATGCTTCAGATGTTGCTCCAAGTGGTGTAGTTGATTTCTGCAAGGTCATTCCCTCCTTGGTTTCTGAGGATGATAATTCAGTTTTGGTTTCTATTCCCACTGCAGAAGAGATTCGACGTGTTGTTTTCTCTATGGACCCTTCTAGTTCTCCTGGTCCAGATGGTTTTCCCGGCTCCTTTTACCAAAGTTGCTGGGATATTGTTGGTAATGATGTTATTGGCTTTGTGCAATTCTTTTTCCAACAAAATTGGTTATATCCAAATGCTAATTCTAACTTCATTGTGTTAAAGAATAACATTTAA

Protein Analysis

468

Amino Acids

52.57

Weight (kDa)

8.54

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 69 - 187 3.4e-06 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1095
AccB7I CCANNNNNTGG 1 cut(s) 285
AccI GTMKAC 2 cut(s) 207, 677
AccII CGCG 3 cut(s) 212, 378, 450
AciI CCGC 5 cut(s) 62, 212, 450, 902, 997
AclWI GGATC 2 cut(s) 564, 1052
AcoI YGGCCR 1 cut(s) 515
AcsI RAATTY 1 cut(s) 976
AcuI CTGAAG 3 cut(s) 402, 891, 1095
AfaI GTAC 2 cut(s) 79, 594
AfiI CCNNNNNNNGG 3 cut(s) 285, 339, 1003
AflII CTTAAG 1 cut(s) 746
AflIII ACRYGT 1 cut(s) 1222
AgsI TTSAA 4 cut(s) 46, 652, 736, 824
AhlI ACTAGT 1 cut(s) 133
AjiI CACGTC 1 cut(s) 1223
AjnI CCWGG 3 cut(s) 595, 683, 1255
AjuI GAANNNNNNNTTGG 2 cut(s) 1357, 1389
AluBI AGCT 3 cut(s) 536, 692, 938
AluI AGCT 3 cut(s) 536, 692, 938
Alw21I GWGCWC 2 cut(s) 141, 940
Alw26I GTCTC 2 cut(s) 294, 911
AlwI GGATC 2 cut(s) 564, 1052
Ama87I CYCGRG 1 cut(s) 543
AoxI GGCC 6 cut(s) 330, 515, 686, 729, 798, 885
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 976
ArsI GACNNNNNNTTYG 2 cut(s) 659, 691
Asp700I GAANNNNTTC 1 cut(s) 1215
AspLEI GCGC 2 cut(s) 450, 1014
AspS9I GGNCC 4 cut(s) 602, 799, 1240, 1259
AsuC2I CCSGG 1 cut(s) 1275
AsuHPI GGTGA 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 543
AvaII GGWCC 3 cut(s) 602, 1240, 1259
BalI TGGCCA 1 cut(s) 517
BanII GRGCYC 2 cut(s) 325, 940
BauI CACGAG 1 cut(s) 939
Bbv12I GWGCWC 2 cut(s) 141, 940
BbvI GCAGC 1 cut(s) 13
BccI CCATC 4 cut(s) 283, 414, 491, 1259
BceAI ACGGC 1 cut(s) 488
BciT130I CCWGG 3 cut(s) 597, 685, 1257
BcnI CCSGG 1 cut(s) 1275
BcoDI GTCTC 2 cut(s) 294, 911
BcuI ACTAGT 1 cut(s) 133
BfaI CTAG 2 cut(s) 134, 1248
BfmI CTRYAG 2 cut(s) 144, 1206
BfoI RGCGCY 1 cut(s) 1015
BfrI CTTAAG 1 cut(s) 746
BisI GCNGC 2 cut(s) 27, 213
BlsI GCNGC 2 cut(s) 28, 214
Bme1390I CCNGG 4 cut(s) 597, 685, 1257, 1275
Bme18I GGWCC 3 cut(s) 602, 1240, 1259
BmeT110I CYCGRG 1 cut(s) 543
BmgBI CACGTC 1 cut(s) 1223
BmgT120I GGNCC 4 cut(s) 602, 799, 1240, 1259
BmiI GGNNCC 3 cut(s) 603, 1242, 1279
BmrFI CCNGG 4 cut(s) 597, 685, 1257, 1275
BmrI ACTGGG 1 cut(s) 43
BmsI GCATC 2 cut(s) 370, 919
BmuI ACTGGG 1 cut(s) 43
Bpu10I CCTNAGC 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 1275
BsaJI CCNNGG 5 cut(s) 284, 596, 762, 957, 1161
Bsc4I CCNNNNNNNGG 3 cut(s) 285, 339, 1003
Bse118I RCCGGY 1 cut(s) 581
Bse1I ACTGG 1 cut(s) 38
Bse3DI GCAATG 2 cut(s) 758, 1024
BseBI CCWGG 3 cut(s) 597, 685, 1257
BseDI CCNNGG 5 cut(s) 284, 596, 762, 957, 1161
BseGI GGATG 2 cut(s) 294, 1180
BseLI CCNNNNNNNGG 3 cut(s) 285, 339, 1003
BseMI GCAATG 2 cut(s) 758, 1024
BseMII CTCAG 1 cut(s) 1161
BseNI ACTGG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 13
BseYI CCCAGC 1 cut(s) 1296
BsgI GTGCAG 1 cut(s) 207
Bsh1236I CGCG 3 cut(s) 212, 378, 450
Bsh1285I CGRYCG 1 cut(s) 454
BshFI GGCC 6 cut(s) 332, 517, 688, 731, 800, 887
BsiEI CGRYCG 1 cut(s) 454
BsiHKAI GWGCWC 2 cut(s) 141, 940
BsiHKCI CYCGRG 1 cut(s) 543
BsiSI CCGG 2 cut(s) 582, 1275
BslFI GGGAC 1 cut(s) 684
BslI CCNNNNNNNGG 3 cut(s) 285, 339, 1003
BsmAI GTCTC 2 cut(s) 294, 911
BsmFI GGGAC 1 cut(s) 684
BsnI GGCC 6 cut(s) 332, 517, 688, 731, 800, 887
BsoBI CYCGRG 1 cut(s) 543
Bsp1286I GDGCHC 3 cut(s) 141, 325, 940
Bsp143I GATC 4 cut(s) 148, 478, 556, 1057
Bsp19I CCATGG 1 cut(s) 284
Bsp68I TCGCGA 1 cut(s) 378
BspACI CCGC 5 cut(s) 62, 212, 450, 902, 997
BspANI GGCC 6 cut(s) 332, 517, 688, 731, 800, 887
BspCNI CTCAG 1 cut(s) 1162
BspFNI CGCG 3 cut(s) 212, 378, 450
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 3 cut(s) 603, 1242, 1279
BspMAI CTGCAG 2 cut(s) 148, 1210
BspPI GGATC 2 cut(s) 564, 1052
BspQI GCTCTTC 1 cut(s) 543
BspTI CTTAAG 1 cut(s) 746
BsrDI GCAATG 2 cut(s) 758, 1024
BsrFI RCCGGY 1 cut(s) 581
BsrI ACTGG 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 581
BssECI CCNNGG 5 cut(s) 284, 596, 762, 957, 1161
BssMI GATC 4 cut(s) 148, 478, 556, 1057
BssSI CACGAG 1 cut(s) 939
BssT1I CCWWGG 2 cut(s) 284, 1161
Bst2BI CACGAG 1 cut(s) 939
Bst2UI CCWGG 3 cut(s) 597, 685, 1257
Bst4CI ACNGT 2 cut(s) 530, 766
Bst6I CTCTTC 5 cut(s) 87, 127, 543, 649, 1206
BstAFI CTTAAG 1 cut(s) 746
BstC8I GCNNGC 2 cut(s) 690, 997
BstDEI CTNAG 3 cut(s) 351, 807, 1170
BstDSI CCRYGG 2 cut(s) 284, 762
BstF5I GGATG 2 cut(s) 294, 1180
BstFNI CGCG 3 cut(s) 212, 378, 450
BstH2I RGCGCY 1 cut(s) 1015
BstHHI GCGC 2 cut(s) 450, 1014
BstKTI GATC 4 cut(s) 151, 481, 559, 1060
BstMAI GTCTC 2 cut(s) 294, 911
BstMBI GATC 4 cut(s) 148, 478, 556, 1057
BstMCI CGRYCG 1 cut(s) 454
BstMWI GCNNNNNNNGC 3 cut(s) 35, 221, 329
BstNI CCWGG 3 cut(s) 597, 685, 1257
BstSCI CCNGG 4 cut(s) 595, 683, 1255, 1273
BstSFI CTRYAG 2 cut(s) 144, 1206
BstUI CGCG 3 cut(s) 212, 378, 450
BstV1I GCAGC 1 cut(s) 13
BstXI CCANNNNNNTGG 1 cut(s) 96
BsuRI GGCC 6 cut(s) 332, 517, 688, 731, 800, 887
BtgI CCRYGG 2 cut(s) 284, 762
BtgZI GCGATG 1 cut(s) 393
BtrI CACGTC 1 cut(s) 1223
BtsCI GGATG 2 cut(s) 294, 1180
BtsI GCAGTG 1 cut(s) 1203
BtsIMutI CAGTG 1 cut(s) 1203
BtuMI TCGCGA 1 cut(s) 378
Cac8I GCNNGC 2 cut(s) 690, 997
CciI TCATGA 1 cut(s) 325
CfoI GCGC 2 cut(s) 450, 1014
Cfr10I RCCGGY 1 cut(s) 581
Cfr13I GGNCC 4 cut(s) 602, 799, 1240, 1259
CseI GACGC 1 cut(s) 721
Csp6I GTAC 2 cut(s) 78, 593
CspCI CAANNNNNGTGG 4 cut(s) 611, 646, 751, 786
CviAII CATG 7 cut(s) 285, 326, 334, 435, 703, 986, 1079
CviQI GTAC 2 cut(s) 78, 593
DdeI CTNAG 3 cut(s) 351, 807, 1170
DpnI GATC 4 cut(s) 150, 480, 558, 1059
DpnII GATC 4 cut(s) 148, 478, 556, 1057
EaeI YGGCCR 1 cut(s) 515
Eam1104I CTCTTC 5 cut(s) 87, 127, 543, 649, 1206
EarI CTCTTC 5 cut(s) 87, 127, 543, 649, 1206
Ecl136II GAGCTC 1 cut(s) 938
Eco130I CCWWGG 2 cut(s) 284, 1161
Eco147I AGGCCT 1 cut(s) 731
Eco24I GRGCYC 2 cut(s) 325, 940
Eco47I GGWCC 3 cut(s) 602, 1240, 1259
Eco53kI GAGCTC 1 cut(s) 938
Eco57I CTGAAG 3 cut(s) 402, 891, 1095
Eco88I CYCGRG 1 cut(s) 543
EcoICRI GAGCTC 1 cut(s) 938
EcoO109I RGGNCCY 1 cut(s) 602
EcoRII CCWGG 3 cut(s) 595, 683, 1255
EcoT14I CCWWGG 2 cut(s) 284, 1161
EcoT22I ATGCAT 1 cut(s) 1026
EcoT38I GRGCYC 2 cut(s) 325, 940
ErhI CCWWGG 2 cut(s) 284, 1161
FaeI CATG 7 cut(s) 288, 329, 337, 438, 706, 989, 1082
FalI AAGNNNNNCTT 4 cut(s) 171, 203, 1000, 1032
FaqI GGGAC 1 cut(s) 684
FatI CATG 7 cut(s) 284, 325, 333, 434, 702, 985, 1078
FauI CCCGC 1 cut(s) 1004
FblI GTMKAC 2 cut(s) 207, 677
Fnu4HI GCNGC 2 cut(s) 27, 213
FokI GGATG 2 cut(s) 301, 1187
FriOI GRGCYC 2 cut(s) 325, 940
Fsp4HI GCNGC 2 cut(s) 27, 213
FspBI CTAG 2 cut(s) 134, 1248
GlaI GCGC 2 cut(s) 449, 1013
GluI GCNGC 2 cut(s) 27, 213
GsaI CCCAGC 1 cut(s) 1300
HaeII RGCGCY 1 cut(s) 1015
HaeIII GGCC 6 cut(s) 332, 517, 688, 731, 800, 887
HapII CCGG 2 cut(s) 582, 1275
HgaI GACGC 1 cut(s) 721
HhaI GCGC 2 cut(s) 450, 1014
Hin1II CATG 7 cut(s) 288, 329, 337, 438, 706, 989, 1082
Hin6I GCGC 2 cut(s) 448, 1012
HinP1I GCGC 2 cut(s) 448, 1012
HincII GTYRAC 3 cut(s) 269, 678, 813
HindII GTYRAC 3 cut(s) 269, 678, 813
HinfI GANTC 4 cut(s) 4, 14, 46, 1216
HpaII CCGG 2 cut(s) 582, 1275
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 6 cut(s) 208, 269, 569, 678, 813, 954
Hpy188I TCNGA 6 cut(s) 168, 250, 456, 556, 1114, 1171
Hpy188III TCNNGA 5 cut(s) 326, 377, 410, 914, 1262
Hpy8I GTNNAC 6 cut(s) 208, 269, 569, 678, 813, 954
Hpy99I CGWCG 3 cut(s) 237, 474, 1224
HpyAV CCTTC 2 cut(s) 173, 1254
HpyCH4III ACNGT 2 cut(s) 530, 766
HpyCH4IV ACGT 2 cut(s) 232, 1222
HpyCH4V TGCA 8 cut(s) 146, 224, 311, 881, 1024, 1146, 1208, 1333
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 221, 329
HpyF3I CTNAG 3 cut(s) 351, 807, 1170
HpySE526I ACGT 2 cut(s) 232, 1222
Hsp92II CATG 7 cut(s) 288, 329, 337, 438, 706, 989, 1082
HspAI GCGC 2 cut(s) 448, 1012
Kzo9I GATC 4 cut(s) 148, 478, 556, 1057
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 3 cut(s) 488, 1126, 1283
Lsp1109I GCAGC 1 cut(s) 13
LweI GCATC 2 cut(s) 370, 919
MaeI CTAG 2 cut(s) 134, 1248
MaeII ACGT 2 cut(s) 232, 1222
MaeIII GTNAC 1 cut(s) 709
MalI GATC 4 cut(s) 150, 480, 558, 1059
MboI GATC 4 cut(s) 148, 478, 556, 1057
MboII GAAGA 8 cut(s) 74, 77, 114, 254, 530, 636, 1040, 1223
MhlI GDGCHC 3 cut(s) 141, 325, 940
MlsI TGGCCA 1 cut(s) 517
MluCI AATT 9 cut(s) 57, 239, 667, 722, 976, 1180, 1334, 1351, 1372
MluNI TGGCCA 1 cut(s) 517
MlyI GAGTC 1 cut(s) 8
MmeI TCCRAC 3 cut(s) 228, 434, 1369
MnlI CCTC 9 cut(s) 68, 322, 361, 502, 859, 921, 952, 1165, 1168
Mox20I TGGCCA 1 cut(s) 517
Mph1103I ATGCAT 1 cut(s) 1026
MroXI GAANNNNTTC 1 cut(s) 1215
MscI TGGCCA 1 cut(s) 517
MslI CAYNNNNRTG 2 cut(s) 707, 990
Msp20I TGGCCA 1 cut(s) 517
MspA1I CMGCKG 1 cut(s) 692
MspCI CTTAAG 1 cut(s) 746
MspI CCGG 2 cut(s) 582, 1275
MspR9I CCNGG 4 cut(s) 597, 685, 1257, 1275
MvaI CCWGG 3 cut(s) 597, 685, 1257
MvnI CGCG 3 cut(s) 212, 378, 450
MwoI GCNNNNNNNGC 3 cut(s) 35, 221, 329
NciI CCSGG 1 cut(s) 1275
NcoI CCATGG 1 cut(s) 284
NdeII GATC 4 cut(s) 148, 478, 556, 1057
NlaIII CATG 7 cut(s) 288, 329, 337, 438, 706, 989, 1082
NlaIV GGNNCC 3 cut(s) 603, 1242, 1279
NmuCI GTSAC 1 cut(s) 709
NruI TCGCGA 1 cut(s) 378
NsiI ATGCAT 1 cut(s) 1026
PagI TCATGA 1 cut(s) 325
PceI AGGCCT 1 cut(s) 731
PciSI GCTCTTC 1 cut(s) 543
PdmI GAANNNNTTC 1 cut(s) 1215
PfeI GAWTC 3 cut(s) 4, 46, 1216
PflMI CCANNNNNTGG 1 cut(s) 285
PkrI GCNGC 2 cut(s) 28, 214
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
PpuMI RGGWCCY 1 cut(s) 602
PsiI TTATAA 1 cut(s) 1095
Psp124BI GAGCTC 1 cut(s) 940
Psp5II RGGWCCY 1 cut(s) 602
Psp6I CCWGG 3 cut(s) 595, 683, 1255
PspFI CCCAGC 1 cut(s) 1296
PspGI CCWGG 3 cut(s) 595, 683, 1255
PspN4I GGNNCC 3 cut(s) 603, 1242, 1279
PspPI GGNCC 4 cut(s) 602, 799, 1240, 1259
PspPPI RGGWCCY 1 cut(s) 602
PstI CTGCAG 2 cut(s) 148, 1210
PvuII CAGCTG 1 cut(s) 692
RruI TCGCGA 1 cut(s) 378
RsaI GTAC 2 cut(s) 79, 594
RsaNI GTAC 2 cut(s) 78, 593
RseI CAYNNNNRTG 2 cut(s) 707, 990
SacI GAGCTC 1 cut(s) 940
SalI GTCGAC 1 cut(s) 676
SapI GCTCTTC 1 cut(s) 543
SatI GCNGC 2 cut(s) 27, 213
Sau3AI GATC 4 cut(s) 148, 478, 556, 1057
Sau96I GGNCC 4 cut(s) 602, 799, 1240, 1259
SchI GAGTC 1 cut(s) 8
ScrFI CCNGG 4 cut(s) 597, 685, 1257, 1275
SduI GDGCHC 3 cut(s) 141, 325, 940
SetI ASST 9 cut(s) 79, 235, 538, 613, 694, 940, 1038, 1152, 1225
SfaNI GCATC 2 cut(s) 370, 919
SfcI CTRYAG 2 cut(s) 144, 1206
SinI GGWCC 3 cut(s) 602, 1240, 1259
SmiMI CAYNNNNRTG 2 cut(s) 707, 990
SmlI CTYRAG 1 cut(s) 746
SmoI CTYRAG 1 cut(s) 746
SpeI ACTAGT 1 cut(s) 133
Sse9I AATT 9 cut(s) 57, 239, 667, 722, 976, 1180, 1334, 1351, 1372
SseBI AGGCCT 1 cut(s) 731
SsiI CCGC 5 cut(s) 62, 212, 450, 902, 997
SspMI CTAG 2 cut(s) 134, 1248
SstI GAGCTC 1 cut(s) 940
StuI AGGCCT 1 cut(s) 731
StyD4I CCNGG 4 cut(s) 595, 683, 1255, 1273
StyI CCWWGG 2 cut(s) 284, 1161
TaaI ACNGT 2 cut(s) 530, 766
TaiI ACGT 2 cut(s) 235, 1225
TaqI TCGA 2 cut(s) 677, 1219
TasI AATT 9 cut(s) 57, 239, 667, 722, 976, 1180, 1334, 1351, 1372
TauI GCSGC 1 cut(s) 215
TfiI GAWTC 3 cut(s) 4, 46, 1216
TscAI CASTG 1 cut(s) 1210
TseFI GTSAC 1 cut(s) 709
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 709
TspDTI ATGAA 4 cut(s) 348, 350, 770, 1372
TspRI CASTG 1 cut(s) 1210
Van91I CCANNNNNTGG 1 cut(s) 285
Vha464I CTTAAG 1 cut(s) 746
VpaK11BI GGWCC 3 cut(s) 602, 1240, 1259
XapI RAATTY 1 cut(s) 976
XcmI CCANNNNNNNNNTGG 1 cut(s) 286
XmiI GTMKAC 2 cut(s) 207, 677
XmnI GAANNNNTTC 1 cut(s) 1215
XspI CTAG 2 cut(s) 134, 1248
Zsp2I ATGCAT 1 cut(s) 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.