Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002594

Physical Location & Seq

Genomic Coordinates Reverse (-)

68830369 .. 68833092

Gene Structure 2724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00132000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCAGACAGCTTTGACTGTGCCACTTCAAACCTTCTTTGTGCTGAAAACTCTTTTGATGAGGTTGATTTTAATGCCTTGGATGATTTTGGGCTCTCCCCTTTAATGCCCCATAAAAACAACGCTTCGCAGAATCAAGACCCCAAATTTAATCATAATAGATCCAAATCTATGGTAGATTTTCCATTACAGAGTGAAGATAGGATTAGTGAAATGGTCAAGAGGGAAAGTGAGCATTTGCCTAGTGATGATTACCTCAAGAGACTGCGCAGTGGGGACTTGAACTTGAGCAGTAGAAGAGAGGCCCTTGATTGGATTTTGAAGGCTCGTGCACATTACAGTTTTGGACCATTGAGTGTTTGTCTATCTATGAACTACTGGGACCGCTTCCTTTCCGTTTATCCATTGCCTAAAGATAAAACTTGGGCAGTGCAACTGCTAGCTGTGGCTTGTTTATCACTGGCCTCCAAAATGGAGGAGACCGATGTACCACAGACAGTGGATTTACAGGTTGGAGATCCCAAGCATGTGTTTGAAGCTAAAACTATAATGAGAATGGAGCTTCTTGTGCTAAGCACCCTAAAGTGGAGAATGCAAGCTTATACTCCATGCTCTTTCATTGATTACTTCCTAAGCAAGATCAGTGATGATCAACATCAGCCGACATCATCCATCAGCAGATCAGTGCAACTCATATTGAGCACAATAAGAGGTATTGACTTCTTGGAATTCAGGCCTTCTGAAATTGCTGCAGCAGTTGCACTTTGTATTTCAGGAGAAGTAATGCAAGGAGTGGACATGGAGAAGGCCATTTCTTGTTTCATACATGTAGAAAAGGGAAGAGTGTTGAAGTGTGTTGAACTGATCAAAGATTTGTCATTGATCAGTGGCTCTGCTAATAGAGGAAGCGCTTCAGCTTCATCCGTGCCCCAAAGTCCGGTTGGGGTGTTGGATGCTGCGTGCTTGAGCTATAAAAGTGACGAATTTACAGTTGGGTCATGTGCAAATTCTTCACATTCTAGTCCAGACATTAAGAGGAGAAAACCAGACAATCCATCTGAAAAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010374 GO:0010440 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

356

Amino Acids

39.65

Weight (kDa)

5.56

Isoelectric Point (pI)

48.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	69 - 198	8.4e-30	Cyclin, N-terminal domain
Cyclin_C	PF02984	202 - 297	1.4e-11	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22490 AT2G22490 AT5G10440 AT5G10440 AT5G65420 AT5G65420 AT5G65420 AT5G65420
fragaria_vesca	FvH4_1g19970 FvH4_5g35800
malus_domestica	MD01G1037500.v1.1 MD08G1193300.v1.1 MD15G1315400.v1.1 MD15G1381900.v1.1
prunus_persica	Prupe.1G527900_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1
pyrus_communis	pycom01g06540 pycom15g27860
rosa_chinensis	RchiOBHm_Chr2g0111911 RchiOBHm_Chr7g0237481
rosa_laevigata	RLG00000000999 RLG00000017937
rosa_multiflora	Rmu_sc0002923.1_g000002 Rmu_sc0006833.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132000 Rroxscaffold_3G00224140
rosa_rugosa	Rorug02G0177000 Rorug07G0303700
rosa_samantha	Rh2AG229400 Rh2BG242100 Rh2BG242200 Rh2CG233500 Rh2DG237100 Rh7BG430900 Rh7CG478300 Rh7DG447600
rosa_wichuraiana	Rw2G017750 Rw7G038150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	269
AciI	CCGC	1 cut(s)	385
AclWI	GGATC	2 cut(s)	156, 512
AcsI	RAATTY	4 cut(s)	146, 728, 983, 1006
AcuI	CTGAAG	1 cut(s)	897
AfaI	GTAC	1 cut(s)	489
AfeI	AGCGCT	1 cut(s)	910
AfiI	CCNNNNNNNGG	3 cut(s)	312, 585, 937
AflIII	ACRYGT	1 cut(s)	826
AgsI	TTSAA	6 cut(s)	30, 283, 322, 536, 850, 860
AjuI	GAANNNNNNNTTGG	2 cut(s)	975, 1007
AluBI	AGCT	7 cut(s)	12, 443, 539, 562, 599, 917, 969
AluI	AGCT	7 cut(s)	12, 443, 539, 562, 599, 917, 969
Alw21I	GWGCWC	2 cut(s)	334, 704
Alw26I	GTCTC	2 cut(s)	256, 473
Alw44I	GTGCAC	1 cut(s)	330
AlwI	GGATC	2 cut(s)	156, 512
Aor51HI	AGCGCT	1 cut(s)	910
AoxI	GGCC	4 cut(s)	303, 462, 734, 807
ApaLI	GTGCAC	1 cut(s)	330
ApeKI	GCWGC	3 cut(s)	749, 752, 956
ApoI	RAATTY	4 cut(s)	146, 728, 983, 1006
Asp700I	GAANNNNTTC	1 cut(s)	910
AspLEI	GCGC	2 cut(s)	270, 911
AspS9I	GGNCC	3 cut(s)	304, 347, 382
AsuNHI	GCTAGC	1 cut(s)	439
AvaII	GGWCC	2 cut(s)	347, 382
BaeGI	GKGCMC	2 cut(s)	334, 930
BaeI	ACNNNNGTAYC	2 cut(s)	471, 504
BanII	GRGCYC	1 cut(s)	96
BauI	CACGAG	1 cut(s)	327
Bbv12I	GWGCWC	2 cut(s)	334, 704
BbvI	GCAGC	3 cut(s)	736, 764, 943
BccI	CCATC	2 cut(s)	680, 1063
BclI	TGATCA	3 cut(s)	649, 864, 882
BcoDI	GTCTC	2 cut(s)	256, 473
BfaI	CTAG	3 cut(s)	243, 440, 1020
BfmI	CTRYAG	1 cut(s)	750
BfoI	RGCGCY	1 cut(s)	912
BisI	GCNGC	3 cut(s)	750, 753, 957
BlpI	GCTNAGC	1 cut(s)	572
BlsI	GCNGC	3 cut(s)	751, 754, 958
Bme18I	GGWCC	2 cut(s)	347, 382
BmgT120I	GGNCC	3 cut(s)	304, 347, 382
BmiI	GGNNCC	1 cut(s)	383
BmrI	ACTGGG	1 cut(s)	388
BmsI	GCATC	1 cut(s)	943
BmtI	GCTAGC	1 cut(s)	443
BmuI	ACTGGG	1 cut(s)	388
Bpu10I	CCTNAGC	1 cut(s)	632
Bpu1102I	GCTNAGC	1 cut(s)	572
BpuEI	CTTGAG	3 cut(s)	242, 307, 985
BsaBI	GATNNNNATC	2 cut(s)	166, 654
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	937
Bsc4I	CCNNNNNNNGG	3 cut(s)	312, 585, 937
Bse1I	ACTGG	2 cut(s)	383, 465
Bse3DI	GCAATG	1 cut(s)	404
Bse8I	GATNNNNATC	2 cut(s)	166, 654
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	4 cut(s)	88, 668, 920, 958
BseJI	GATNNNNATC	2 cut(s)	166, 654
BseLI	CCNNNNNNNGG	3 cut(s)	312, 585, 937
BseMI	GCAATG	1 cut(s)	404
BseNI	ACTGG	2 cut(s)	383, 465
BseRI	GAGGAG	2 cut(s)	491, 1051
BseSI	GKGCMC	2 cut(s)	334, 930
BseXI	GCAGC	3 cut(s)	736, 764, 943
BshFI	GGCC	4 cut(s)	305, 464, 736, 809
BsiHKAI	GWGCWC	2 cut(s)	334, 704
BsiSI	CCGG	1 cut(s)	938
BslFI	GGGAC	2 cut(s)	290, 395
BslI	CCNNNNNNNGG	3 cut(s)	312, 585, 937
BsmAI	GTCTC	2 cut(s)	256, 473
BsmFI	GGGAC	2 cut(s)	290, 395
BsmI	GAATGC	1 cut(s)	597
BsnI	GGCC	4 cut(s)	305, 464, 736, 809
Bso31I	GGTCTC	1 cut(s)	473
Bsp1286I	GDGCHC	4 cut(s)	96, 334, 704, 930
Bsp143I	GATC	7 cut(s)	161, 517, 639, 649, 680, 864, 882
Bsp1720I	GCTNAGC	1 cut(s)	572
BspACI	CCGC	1 cut(s)	385
BspANI	GGCC	4 cut(s)	305, 464, 736, 809
BspHI	TCATGA	1 cut(s)	1067
BspLI	GGNNCC	1 cut(s)	383
BspMAI	CTGCAG	1 cut(s)	754
BspOI	GCTAGC	1 cut(s)	443
BspPI	GGATC	2 cut(s)	156, 512
BspTNI	GGTCTC	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	404
BsrI	ACTGG	2 cut(s)	383, 465
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	7 cut(s)	161, 517, 639, 649, 680, 864, 882
BssSI	CACGAG	1 cut(s)	327
BssT1I	CCWWGG	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	327
Bst4CI	ACNGT	4 cut(s)	20, 341, 499, 991
Bst6I	CTCTTC	2 cut(s)	292, 835
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstC8I	GCNNGC	3 cut(s)	441, 597, 961
BstDEI	CTNAG	2 cut(s)	572, 632
BstF5I	GGATG	4 cut(s)	88, 668, 920, 958
BstH2I	RGCGCY	1 cut(s)	912
BstHHI	GCGC	2 cut(s)	270, 911
BstKTI	GATC	7 cut(s)	164, 520, 642, 652, 683, 867, 885
BstMAI	GTCTC	2 cut(s)	256, 473
BstMBI	GATC	7 cut(s)	161, 517, 639, 649, 680, 864, 882
BstMWI	GCNNNNNNNGC	2 cut(s)	568, 758
BstNSI	RCATGY	2 cut(s)	530, 830
BstSFI	CTRYAG	1 cut(s)	750
BstSLI	GKGCMC	2 cut(s)	334, 930
BstV1I	GCAGC	3 cut(s)	736, 764, 943
BstX2I	RGATCY	2 cut(s)	161, 517
BstXI	CCANNNNNNTGG	1 cut(s)	172
BstYI	RGATCY	2 cut(s)	161, 517
BsuRI	GGCC	4 cut(s)	305, 464, 736, 809
BtsCI	GGATG	4 cut(s)	88, 668, 920, 958
BtsI	GCAGTG	2 cut(s)	277, 435
BtsIMutI	CAGTG	7 cut(s)	277, 435, 458, 504, 649, 690, 892
Cac8I	GCNNGC	3 cut(s)	441, 597, 961
CciI	TCATGA	1 cut(s)	1067
CfoI	GCGC	2 cut(s)	270, 911
Cfr13I	GGNCC	3 cut(s)	304, 347, 382
Csp6I	GTAC	1 cut(s)	488
CviAII	CATG	6 cut(s)	527, 609, 799, 827, 999, 1068
CviQI	GTAC	1 cut(s)	488
DdeI	CTNAG	2 cut(s)	572, 632
DpnI	GATC	7 cut(s)	163, 519, 641, 651, 682, 866, 884
DpnII	GATC	7 cut(s)	161, 517, 639, 649, 680, 864, 882
Eam1104I	CTCTTC	2 cut(s)	292, 835
EarI	CTCTTC	2 cut(s)	292, 835
Eco130I	CCWWGG	1 cut(s)	78
Eco147I	AGGCCT	1 cut(s)	736
Eco24I	GRGCYC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	473
Eco47I	GGWCC	2 cut(s)	347, 382
Eco47III	AGCGCT	1 cut(s)	910
Eco57I	CTGAAG	1 cut(s)	897
EcoO109I	RGGNCCY	1 cut(s)	304
EcoRI	GAATTC	1 cut(s)	728
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	6 cut(s)	530, 612, 802, 830, 1002, 1071
FaqI	GGGAC	2 cut(s)	290, 395
FatI	CATG	6 cut(s)	526, 608, 798, 826, 998, 1067
FbaI	TGATCA	3 cut(s)	649, 864, 882
Fnu4HI	GCNGC	3 cut(s)	750, 753, 957
FokI	GGATG	4 cut(s)	95, 655, 907, 965
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	3 cut(s)	750, 753, 957
FspBI	CTAG	3 cut(s)	243, 440, 1020
FspI	TGCGCA	1 cut(s)	269
GlaI	GCGC	2 cut(s)	269, 910
GluI	GCNGC	3 cut(s)	750, 753, 957
HaeII	RGCGCY	1 cut(s)	912
HaeIII	GGCC	4 cut(s)	305, 464, 736, 809
HapII	CCGG	1 cut(s)	938
HhaI	GCGC	2 cut(s)	270, 911
Hin1II	CATG	6 cut(s)	530, 612, 802, 830, 1002, 1071
Hin6I	GCGC	2 cut(s)	268, 909
HinP1I	GCGC	2 cut(s)	268, 909
HindIII	AAGCTT	1 cut(s)	597
HinfI	GANTC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	938
Hpy166II	GTNNAC	2 cut(s)	332, 796
Hpy188I	TCNGA	2 cut(s)	742, 1060
Hpy188III	TCNNGA	6 cut(s)	137, 220, 259, 774, 1025, 1068
Hpy8I	GTNNAC	2 cut(s)	332, 796
HpyAV	CCTTC	4 cut(s)	44, 316, 747, 799
HpyCH4III	ACNGT	4 cut(s)	20, 341, 499, 991
HpyCH4V	TGCA	8 cut(s)	332, 433, 595, 688, 752, 761, 787, 1004
HpyF10VI	GCNNNNNNNGC	2 cut(s)	568, 758
HpyF3I	CTNAG	2 cut(s)	572, 632
Hsp92II	CATG	6 cut(s)	530, 612, 802, 830, 1002, 1071
HspAI	GCGC	2 cut(s)	268, 909
Ksp22I	TGATCA	3 cut(s)	649, 864, 882
Kzo9I	GATC	7 cut(s)	161, 517, 639, 649, 680, 864, 882
LmnI	GCTCC	1 cut(s)	559
LpnPI	CCDG	8 cut(s)	364, 446, 494, 718, 759, 951, 1038, 1059
Lsp1109I	GCAGC	3 cut(s)	736, 764, 943
LweI	GCATC	1 cut(s)	943
MaeI	CTAG	3 cut(s)	243, 440, 1020
MaeIII	GTNAC	1 cut(s)	977
MalI	GATC	7 cut(s)	163, 519, 641, 651, 682, 866, 884
MboI	GATC	7 cut(s)	161, 517, 639, 649, 680, 864, 882
MboII	GAAGA	4 cut(s)	209, 309, 852, 1002
MflI	RGATCY	2 cut(s)	161, 517
MhlI	GDGCHC	4 cut(s)	96, 334, 704, 930
MluCI	AATT	5 cut(s)	146, 728, 744, 983, 1006
MmeI	TCCRAC	2 cut(s)	493, 930
MnlI	CCTC	9 cut(s)	55, 216, 266, 295, 469, 475, 704, 896, 1029
MroXI	GAANNNNTTC	1 cut(s)	910
MseI	TTAA	4 cut(s)	72, 104, 150, 1032
MspI	CCGG	1 cut(s)	938
Mva1269I	GAATGC	1 cut(s)	597
MwoI	GCNNNNNNNGC	2 cut(s)	568, 758
NdeII	GATC	7 cut(s)	161, 517, 639, 649, 680, 864, 882
NheI	GCTAGC	1 cut(s)	439
NlaIII	CATG	6 cut(s)	530, 612, 802, 830, 1002, 1071
NlaIV	GGNNCC	1 cut(s)	383
NmuCI	GTSAC	1 cut(s)	977
NsbI	TGCGCA	1 cut(s)	269
NspI	RCATGY	2 cut(s)	530, 830
PagI	TCATGA	1 cut(s)	1067
PceI	AGGCCT	1 cut(s)	736
PciI	ACATGT	1 cut(s)	826
PctI	GAATGC	1 cut(s)	597
PdmI	GAANNNNTTC	1 cut(s)	910
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	3 cut(s)	751, 754, 958
PscI	ACATGT	1 cut(s)	826
PspN4I	GGNNCC	1 cut(s)	383
PspPI	GGNCC	3 cut(s)	304, 347, 382
PstI	CTGCAG	1 cut(s)	754
PsuI	RGATCY	2 cut(s)	161, 517
RsaI	GTAC	1 cut(s)	489
RsaNI	GTAC	1 cut(s)	488
SaqAI	TTAA	4 cut(s)	72, 104, 150, 1032
SatI	GCNGC	3 cut(s)	750, 753, 957
Sau3AI	GATC	7 cut(s)	161, 517, 639, 649, 680, 864, 882
Sau96I	GGNCC	3 cut(s)	304, 347, 382
SduI	GDGCHC	4 cut(s)	96, 334, 704, 930
SfaNI	GCATC	1 cut(s)	943
SfcI	CTRYAG	1 cut(s)	750
SinI	GGWCC	2 cut(s)	347, 382
SmlI	CTYRAG	3 cut(s)	257, 286, 964
SmoI	CTYRAG	3 cut(s)	257, 286, 964
Sse9I	AATT	5 cut(s)	146, 728, 744, 983, 1006
SseBI	AGGCCT	1 cut(s)	736
SsiI	CCGC	1 cut(s)	385
SspMI	CTAG	3 cut(s)	243, 440, 1020
StuI	AGGCCT	1 cut(s)	736
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	4 cut(s)	20, 341, 499, 991
TaqII	GACCGA	1 cut(s)	497
TasI	AATT	5 cut(s)	146, 728, 744, 983, 1006
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	4 cut(s)	72, 104, 150, 1032
Tru9I	TTAA	4 cut(s)	72, 104, 150, 1032
TscAI	CASTG	7 cut(s)	277, 435, 465, 504, 649, 690, 892
TseFI	GTSAC	1 cut(s)	977
TseI	GCWGC	3 cut(s)	749, 752, 956
Tsp45I	GTSAC	1 cut(s)	977
TspDTI	ATGAA	4 cut(s)	386, 607, 811, 909
TspGWI	ACGGA	2 cut(s)	385, 913
TspRI	CASTG	7 cut(s)	277, 435, 465, 504, 649, 690, 892
VneI	GTGCAC	1 cut(s)	330
VpaK11BI	GGWCC	2 cut(s)	347, 382
XapI	RAATTY	4 cut(s)	146, 728, 983, 1006
XceI	RCATGY	2 cut(s)	530, 830
XcmI	CCANNNNNNNNNTGG	1 cut(s)	938
XmnI	GAANNNNTTC	1 cut(s)	910
XspI	CTAG	3 cut(s)	243, 440, 1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.