Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002594

Physical Location & Seq

Genomic Coordinates Reverse (-)

26141470 .. 26144020

Gene Structure 2551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65420.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCAGAGGAGAATCTAGAACTGAGTCTTTTATGTACAGAGAGCAACGTTGATGATGAGGGCATGATTGTTGACGAAACTCCGATTGAAATTTCGATTCCTCAGATGGGTTTTTCTCAATCGGAGAGTGAGGAGATTATCATGGAGATGGTGGAGAAGGAGAAGCAGCATTTGCCAAGTGATGATTACATCAAGAGACTTAGAAGTGGAGATTTGGATTTGAATGTTGGAAGAAGAGATGCCCTCAATTGGATTTGGAAGGCTTGTGAAGTACACCAGTTTGGACCATTGTGTTTTTGCTTAGCAATGAACTACTTGGATCGATTCTTATCGGTTCATGATTTGCCTAGTGGCAAAGGTTGGATATTGCAGTTGTTGGCTGTGGCTTGTTTATCATTGGCAGCCAAAATTGAAGAAACTGAAGTTCCAATGTTGATAGATCTTCAGGTTGGAGATCCTCAGTTTGTGTTTGAGGCTAAATCAGTCCAAAGAATGGAGCTTTTGGTGTTGAACAAATTGAAATGGAGATTGAGAGCAATAACTCCATGCTCATACATAAGATATTTCCTGAGAAAGATGAGTAAATGTGATCAAGAACCATCCAACACATTGATATCTAGATCATTACAAGTGATAGCCAGCACAACCAAAGGTATTGACTTTTTGGAGTTTAGACCTTCTGAAGTTGCTGCTGCTGTGGCACTTTCTGTTTCTGGAGAATTGCAGAGAGTACACTTTGACAACTCTTCCTTCTCTCCTCTTTTCTCACTACTTCAAAAGGAGAGAGTGAAGAAGATAGGGGAAATGATAGAGAGTGATGGCTCAGACTTATGTTCACAAACACCCAATGGGGTTTTAGAAGTATCGGCTTGTTGTTTCAGCTTTAAGACCCATGATTCTTCTTCTTCTTATACACATCTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010374 GO:0010440 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

308

Amino Acids

34.72

Weight (kDa)

4.89

Isoelectric Point (pI)

55.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	45 - 178	4.8e-31	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22490 AT2G22490 AT5G10440 AT5G10440 AT5G65420 AT5G65420 AT5G65420 AT5G65420
fragaria_vesca	FvH4_1g19970 FvH4_5g35800
malus_domestica	MD01G1037500.v1.1 MD08G1193300.v1.1 MD15G1315400.v1.1 MD15G1381900.v1.1
prunus_persica	Prupe.1G527900_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1
pyrus_communis	pycom01g06540 pycom15g27860
rosa_chinensis	RchiOBHm_Chr2g0111911 RchiOBHm_Chr7g0237481
rosa_laevigata	RLG00000000999 RLG00000017937
rosa_multiflora	Rmu_sc0002923.1_g000002 Rmu_sc0006833.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132000 Rroxscaffold_3G00224140
rosa_rugosa	Rorug02G0177000 Rorug07G0303700
rosa_samantha	Rh2AG229400 Rh2BG242100 Rh2BG242200 Rh2CG233500 Rh2DG237100 Rh7BG430900 Rh7CG478300 Rh7DG447600
rosa_wichuraiana	Rw2G017750 Rw7G038150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	493
AclI	AACGTT	1 cut(s)	48
AclWI	GGATC	2 cut(s)	327, 449
AcsI	RAATTY	1 cut(s)	90
AcuI	CTGAAG	3 cut(s)	428, 441, 702
AfaI	GTAC	3 cut(s)	37, 273, 732
AfiI	CCNNNNNNNGG	3 cut(s)	107, 249, 493
AgsI	TTSAA	6 cut(s)	89, 223, 413, 511, 520, 776
AluBI	AGCT	2 cut(s)	499, 882
AluI	AGCT	2 cut(s)	499, 882
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	2 cut(s)	327, 449
ApeKI	GCWGC	4 cut(s)	166, 401, 689, 692
ApoI	RAATTY	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	284
BbvI	GCAGC	4 cut(s)	178, 413, 676, 679
BccI	CCATC	4 cut(s)	100, 142, 607, 812
BclI	TGATCA	1 cut(s)	589
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	3 cut(s)	17, 348, 618
BglII	AGATCT	1 cut(s)	439
BisI	GCNGC	4 cut(s)	167, 402, 690, 693
BlpI	GCTNAGC	1 cut(s)	301
BlsI	GCNGC	4 cut(s)	168, 403, 691, 694
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	284
BmsI	GCATC	1 cut(s)	229
BplI	GAGNNNNNCTC	2 cut(s)	228, 260
BpmI	CTGGAG	1 cut(s)	735
Bpu1102I	GCTNAGC	1 cut(s)	301
Bsa29I	ATCGAT	1 cut(s)	322
BsaBI	GATNNNNATC	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 249, 493
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	312
Bse8I	GATNNNNATC	1 cut(s)	328
BseCI	ATCGAT	1 cut(s)	322
BseGI	GGATG	1 cut(s)	599
BseJI	GATNNNNATC	1 cut(s)	328
BseLI	CCNNNNNNNGG	3 cut(s)	107, 249, 493
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	5 cut(s)	14, 116, 473, 560, 837
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	3 cut(s)	23, 146, 747
BseXI	GCAGC	4 cut(s)	178, 413, 676, 679
BshVI	ATCGAT	1 cut(s)	322
BslI	CCNNNNNNNGG	3 cut(s)	107, 249, 493
BsmAI	GTCTC	1 cut(s)	190
Bsp1407I	TGTACA	1 cut(s)	35
Bsp143I	GATC	5 cut(s)	319, 439, 454, 589, 620
Bsp1720I	GCTNAGC	1 cut(s)	301
BspCNI	CTCAG	5 cut(s)	15, 115, 472, 561, 836
BspDI	ATCGAT	1 cut(s)	322
BspHI	TCATGA	1 cut(s)	337
BspPI	GGATC	2 cut(s)	327, 449
BsrDI	GCAATG	1 cut(s)	312
BsrGI	TGTACA	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	277
BssMI	GATC	5 cut(s)	319, 439, 454, 589, 620
Bst6I	CTCTTC	2 cut(s)	229, 751
BstAPI	GCANNNNNTGC	1 cut(s)	172
BstAUI	TGTACA	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	640
BstDEI	CTNAG	7 cut(s)	23, 102, 200, 301, 459, 569, 823
BstF5I	GGATG	1 cut(s)	599
BstKTI	GATC	5 cut(s)	322, 442, 457, 592, 623
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	5 cut(s)	319, 439, 454, 589, 620
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 698
BstV1I	GCAGC	4 cut(s)	178, 413, 676, 679
BstX2I	RGATCY	2 cut(s)	439, 454
BstYI	RGATCY	2 cut(s)	439, 454
Bsu15I	ATCGAT	1 cut(s)	322
BsuTUI	ATCGAT	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	599
Cac8I	GCNNGC	1 cut(s)	640
CciI	TCATGA	1 cut(s)	337
Cfr13I	GGNCC	1 cut(s)	284
ClaI	ATCGAT	1 cut(s)	322
Csp6I	GTAC	3 cut(s)	36, 272, 731
CviAII	CATG	5 cut(s)	64, 142, 338, 546, 893
CviQI	GTAC	3 cut(s)	36, 272, 731
DdeI	CTNAG	7 cut(s)	23, 102, 200, 301, 459, 569, 823
DpnI	GATC	5 cut(s)	321, 441, 456, 591, 622
DpnII	GATC	5 cut(s)	319, 439, 454, 589, 620
Eam1104I	CTCTTC	2 cut(s)	229, 751
EarI	CTCTTC	2 cut(s)	229, 751
Eco32I	GATATC	1 cut(s)	615
Eco47I	GGWCC	1 cut(s)	284
Eco57I	CTGAAG	3 cut(s)	428, 441, 702
EcoRV	GATATC	1 cut(s)	615
FaeI	CATG	5 cut(s)	67, 145, 341, 549, 896
FatI	CATG	5 cut(s)	63, 141, 337, 545, 892
FbaI	TGATCA	1 cut(s)	589
Fnu4HI	GCNGC	4 cut(s)	167, 402, 690, 693
FokI	GGATG	1 cut(s)	586
Fsp4HI	GCNGC	4 cut(s)	167, 402, 690, 693
FspBI	CTAG	3 cut(s)	17, 348, 618
GluI	GCNGC	4 cut(s)	167, 402, 690, 693
GsuI	CTGGAG	1 cut(s)	735
Hin1II	CATG	5 cut(s)	67, 145, 341, 549, 896
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	5 cut(s)	13, 25, 97, 324, 896
Hpy166II	GTNNAC	4 cut(s)	73, 274, 733, 836
Hpy188I	TCNGA	5 cut(s)	84, 105, 124, 682, 826
Hpy188III	TCNNGA	7 cut(s)	17, 193, 338, 568, 593, 618, 714
Hpy8I	GTNNAC	4 cut(s)	73, 274, 733, 836
HpyAV	CCTTC	4 cut(s)	151, 253, 687, 760
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	2 cut(s)	370, 724
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 698
HpyF3I	CTNAG	7 cut(s)	23, 102, 200, 301, 459, 569, 823
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	5 cut(s)	67, 145, 341, 549, 896
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	5 cut(s)	319, 439, 454, 589, 620
LmnI	GCTCC	1 cut(s)	496
LpnPI	CCDG	5 cut(s)	290, 431, 581, 652, 699
Lsp1109I	GCAGC	4 cut(s)	178, 413, 676, 679
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	3 cut(s)	17, 348, 618
MaeII	ACGT	1 cut(s)	48
MalI	GATC	5 cut(s)	321, 441, 456, 591, 622
MboI	GATC	5 cut(s)	319, 439, 454, 589, 620
MfeI	CAATTG	1 cut(s)	247
MflI	RGATCY	2 cut(s)	439, 454
MluCI	AATT	5 cut(s)	90, 247, 408, 515, 719
MlyI	GAGTC	1 cut(s)	34
MmeI	TCCRAC	4 cut(s)	208, 341, 430, 627
MnlI	CCTC	7 cut(s)	52, 111, 124, 254, 466, 468, 768
MseI	TTAA	2 cut(s)	885, 925
MslI	CAYNNNNRTG	1 cut(s)	146
MunI	CAATTG	1 cut(s)	247
MwoI	GCNNNNNNNGC	2 cut(s)	172, 698
NdeII	GATC	5 cut(s)	319, 439, 454, 589, 620
NlaIII	CATG	5 cut(s)	67, 145, 341, 549, 896
PagI	TCATGA	1 cut(s)	337
PfeI	GAWTC	4 cut(s)	13, 97, 324, 896
PflMI	CCANNNNNTGG	1 cut(s)	493
PkrI	GCNGC	4 cut(s)	168, 403, 691, 694
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
Psp1406I	AACGTT	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	284
PsuI	RGATCY	2 cut(s)	439, 454
RsaI	GTAC	3 cut(s)	37, 273, 732
RsaNI	GTAC	3 cut(s)	36, 272, 731
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	885, 925
SatI	GCNGC	4 cut(s)	167, 402, 690, 693
Sau3AI	GATC	5 cut(s)	319, 439, 454, 589, 620
Sau96I	GGNCC	1 cut(s)	284
SchI	GAGTC	1 cut(s)	34
SetI	ASST	7 cut(s)	51, 361, 450, 501, 655, 679, 884
SfaNI	GCATC	1 cut(s)	229
SinI	GGWCC	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	146
Sse9I	AATT	5 cut(s)	90, 247, 408, 515, 719
SspMI	CTAG	3 cut(s)	17, 348, 618
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	2 cut(s)	95, 322
TasI	AATT	5 cut(s)	90, 247, 408, 515, 719
TatI	WGTACW	3 cut(s)	35, 271, 730
TfiI	GAWTC	4 cut(s)	13, 97, 324, 896
Tru1I	TTAA	2 cut(s)	885, 925
Tru9I	TTAA	2 cut(s)	885, 925
TseI	GCWGC	4 cut(s)	166, 401, 689, 692
TspDTI	ATGAA	2 cut(s)	323, 326
Van91I	CCANNNNNTGG	1 cut(s)	493
VpaK11BI	GGWCC	1 cut(s)	284
XapI	RAATTY	1 cut(s)	90
XbaI	TCTAGA	2 cut(s)	16, 617
XspI	CTAG	3 cut(s)	17, 348, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.