Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002594

Physical Location & Seq

Genomic Coordinates Forward (+)

23886445 .. 23889272

Gene Structure 2828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG233500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTTGATCGTGTTGGTTTTCCTTCTTTGTTTGCCTACTTTTCCTATGTTCCTTTGGGCTCGTGCACATTACAGTTTTGGACCATTGAGTGTGTGTCTATCTATGAACTACTGGGATCGCTTCCTTTCCGTTTATCCATTGCCTAAAGATAAAACTTGGGCAGTGCAACTGCTAGCTGTGGCTTGTTTATCACTGGCCTCCAAAATGGAGGAGACTAATGTACCACAGACAGTGGATTTACAGGTTGGAGATCCCAAGTATGTATTTGAAGCTAAAACTATAATGAGAATGGAGCTTCTTGTGCTTAGCACCCTAAAGTGGAGAATGCAAGCTTATACTCCATGCTCTTTCATTGATTACTTCCTCAGCAAGATCAGTGATGATCAACATGCACCGACATCATCCATCAGTAGATCAGTGCAACTCATATTGAGCATAATGAGAGGTATTGACTTCTTGGAATTCAGGCCTTCTGAAATTGCTGCAGCAGTTGCACTTTGTATTTCAGGAGAAGTAATGCAAGGAGTGGACATGGAGAAGGCCATTTCTTGTTTCATACATGTAGAAAAGGTAAAAAGGCTGTCCCAGAGATGCAAACCCATAAAGGATAGAACAAATTTGCTTTTGCTTTTAAGAAAAGGTGTTGGATATAATTTGATCTCTTTTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010374 GO:0010440 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

223

Amino Acids

25.39

Weight (kDa)

8.82

Isoelectric Point (pI)

26.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	22 - 109	5.3e-21	Cyclin, N-terminal domain
Cyclin_C	PF02984	113 - 188	2.3e-07	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22490 AT2G22490 AT5G10440 AT5G10440 AT5G65420 AT5G65420 AT5G65420 AT5G65420
fragaria_vesca	FvH4_1g19970 FvH4_5g35800
malus_domestica	MD01G1037500.v1.1 MD08G1193300.v1.1 MD15G1315400.v1.1 MD15G1381900.v1.1
prunus_persica	Prupe.1G527900_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1
pyrus_communis	pycom01g06540 pycom15g27860
rosa_chinensis	RchiOBHm_Chr2g0111911 RchiOBHm_Chr7g0237481
rosa_laevigata	RLG00000000999 RLG00000017937
rosa_multiflora	Rmu_sc0002923.1_g000002 Rmu_sc0006833.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132000 Rroxscaffold_3G00224140
rosa_rugosa	Rorug02G0177000 Rorug07G0303700
rosa_samantha	Rh2AG229400 Rh2BG242100 Rh2BG242200 Rh2CG233500 Rh2DG237100 Rh7BG430900 Rh7CG478300 Rh7DG447600
rosa_wichuraiana	Rw2G017750 Rw7G038150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	123, 245
AcsI	RAATTY	2 cut(s)	461, 616
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	318
AflIII	ACRYGT	1 cut(s)	559
AgsI	TTSAA	1 cut(s)	269
AluBI	AGCT	4 cut(s)	176, 272, 295, 332
AluI	AGCT	4 cut(s)	176, 272, 295, 332
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	1 cut(s)	206
Alw44I	GTGCAC	1 cut(s)	63
AlwI	GGATC	2 cut(s)	123, 245
AoxI	GGCC	3 cut(s)	195, 467, 540
ApaLI	GTGCAC	1 cut(s)	63
ApeKI	GCWGC	2 cut(s)	482, 485
ApoI	RAATTY	2 cut(s)	461, 616
AspS9I	GGNCC	1 cut(s)	80
AsuNHI	GCTAGC	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	80
BaeGI	GKGCMC	1 cut(s)	67
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BanII	GRGCYC	1 cut(s)	61
BauI	CACGAG	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	67
BbvCI	CCTCAGC	1 cut(s)	365
BbvI	GCAGC	2 cut(s)	469, 497
BccI	CCATC	1 cut(s)	413
BclI	TGATCA	1 cut(s)	382
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	483
BisI	GCNGC	2 cut(s)	483, 486
BlpI	GCTNAGC	1 cut(s)	305
BlsI	GCNGC	2 cut(s)	484, 487
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	80
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	1 cut(s)	581
BmtI	GCTAGC	1 cut(s)	176
BmuI	ACTGGG	1 cut(s)	121
Bpu10I	CCTNAGC	1 cut(s)	365
Bpu1102I	GCTNAGC	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
Bse1I	ACTGG	2 cut(s)	116, 198
Bse3DI	GCAATG	1 cut(s)	137
BseGI	GGATG	1 cut(s)	401
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMI	GCAATG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	379
BseNI	ACTGG	2 cut(s)	116, 198
BseRI	GAGGAG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	67
BseXI	GCAGC	2 cut(s)	469, 497
BshFI	GGCC	3 cut(s)	197, 469, 542
BsiHKAI	GWGCWC	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	568
BslI	CCNNNNNNNGG	1 cut(s)	318
BsmAI	GTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	568
BsmI	GAATGC	1 cut(s)	330
BsnI	GGCC	3 cut(s)	197, 469, 542
Bsp1286I	GDGCHC	2 cut(s)	61, 67
Bsp143I	GATC	7 cut(s)	6, 115, 250, 372, 382, 413, 657
Bsp1720I	GCTNAGC	1 cut(s)	305
BspANI	GGCC	3 cut(s)	197, 469, 542
BspCNI	CTCAG	1 cut(s)	378
BspMAI	CTGCAG	1 cut(s)	487
BspOI	GCTAGC	1 cut(s)	176
BspPI	GGATC	2 cut(s)	123, 245
BsrDI	GCAATG	1 cut(s)	137
BsrI	ACTGG	2 cut(s)	116, 198
BssMI	GATC	7 cut(s)	6, 115, 250, 372, 382, 413, 657
BssSI	CACGAG	1 cut(s)	60
Bst2BI	CACGAG	1 cut(s)	60
Bst4CI	ACNGT	2 cut(s)	74, 232
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstC8I	GCNNGC	2 cut(s)	174, 330
BstDEI	CTNAG	3 cut(s)	305, 365, 669
BstF5I	GGATG	1 cut(s)	401
BstKTI	GATC	7 cut(s)	9, 118, 253, 375, 385, 416, 660
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	7 cut(s)	6, 115, 250, 372, 382, 413, 657
BstMWI	GCNNNNNNNGC	2 cut(s)	301, 491
BstNSI	RCATGY	2 cut(s)	392, 563
BstSFI	CTRYAG	1 cut(s)	483
BstSLI	GKGCMC	1 cut(s)	67
BstV1I	GCAGC	2 cut(s)	469, 497
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BsuRI	GGCC	3 cut(s)	197, 469, 542
BtsCI	GGATG	1 cut(s)	401
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	5 cut(s)	168, 191, 237, 382, 423
Cac8I	GCNNGC	2 cut(s)	174, 330
Cfr13I	GGNCC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	4 cut(s)	342, 389, 532, 560
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	3 cut(s)	305, 365, 669
DpnI	GATC	7 cut(s)	8, 117, 252, 374, 384, 415, 659
DpnII	GATC	7 cut(s)	6, 115, 250, 372, 382, 413, 657
Eco147I	AGGCCT	1 cut(s)	469
Eco24I	GRGCYC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	461
EcoT38I	GRGCYC	1 cut(s)	61
FaeI	CATG	4 cut(s)	345, 392, 535, 563
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	4 cut(s)	341, 388, 531, 559
FbaI	TGATCA	1 cut(s)	382
Fnu4HI	GCNGC	2 cut(s)	483, 486
FokI	GGATG	1 cut(s)	388
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	2 cut(s)	483, 486
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	2 cut(s)	483, 486
HaeIII	GGCC	3 cut(s)	197, 469, 542
Hin1II	CATG	4 cut(s)	345, 392, 535, 563
HindIII	AAGCTT	1 cut(s)	330
Hpy166II	GTNNAC	2 cut(s)	65, 529
Hpy188I	TCNGA	1 cut(s)	475
Hpy188III	TCNNGA	1 cut(s)	507
Hpy8I	GTNNAC	2 cut(s)	65, 529
HpyAV	CCTTC	3 cut(s)	32, 480, 532
HpyCH4III	ACNGT	2 cut(s)	74, 232
HpyCH4V	TGCA	9 cut(s)	65, 166, 328, 392, 421, 485, 494, 520, 594
HpyF10VI	GCNNNNNNNGC	2 cut(s)	301, 491
HpyF3I	CTNAG	3 cut(s)	305, 365, 669
Hsp92II	CATG	4 cut(s)	345, 392, 535, 563
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	7 cut(s)	6, 115, 250, 372, 382, 413, 657
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	6 cut(s)	97, 179, 227, 451, 492, 599
Lsp1109I	GCAGC	2 cut(s)	469, 497
LweI	GCATC	1 cut(s)	581
MaeI	CTAG	1 cut(s)	173
MalI	GATC	7 cut(s)	8, 117, 252, 374, 384, 415, 659
MboI	GATC	7 cut(s)	6, 115, 250, 372, 382, 413, 657
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	2 cut(s)	61, 67
MluCI	AATT	4 cut(s)	461, 477, 616, 652
MmeI	TCCRAC	2 cut(s)	226, 625
MnlI	CCTC	4 cut(s)	202, 208, 374, 437
MseI	TTAA	1 cut(s)	632
Mva1269I	GAATGC	1 cut(s)	330
MwoI	GCNNNNNNNGC	2 cut(s)	301, 491
NdeII	GATC	7 cut(s)	6, 115, 250, 372, 382, 413, 657
NheI	GCTAGC	1 cut(s)	172
NlaIII	CATG	4 cut(s)	345, 392, 535, 563
NspI	RCATGY	2 cut(s)	392, 563
PceI	AGGCCT	1 cut(s)	469
PciI	ACATGT	1 cut(s)	559
PctI	GAATGC	1 cut(s)	330
PkrI	GCNGC	2 cut(s)	484, 487
PscI	ACATGT	1 cut(s)	559
PspPI	GGNCC	1 cut(s)	80
PstI	CTGCAG	1 cut(s)	487
PsuI	RGATCY	1 cut(s)	250
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	632
SatI	GCNGC	2 cut(s)	483, 486
Sau3AI	GATC	7 cut(s)	6, 115, 250, 372, 382, 413, 657
Sau96I	GGNCC	1 cut(s)	80
SduI	GDGCHC	2 cut(s)	61, 67
SetI	ASST	8 cut(s)	178, 246, 274, 297, 334, 448, 573, 643
SfaNI	GCATC	1 cut(s)	581
SfcI	CTRYAG	1 cut(s)	483
SinI	GGWCC	1 cut(s)	80
Sse9I	AATT	4 cut(s)	461, 477, 616, 652
SseBI	AGGCCT	1 cut(s)	469
SspMI	CTAG	1 cut(s)	173
StuI	AGGCCT	1 cut(s)	469
TaaI	ACNGT	2 cut(s)	74, 232
TasI	AATT	4 cut(s)	461, 477, 616, 652
Tru1I	TTAA	1 cut(s)	632
Tru9I	TTAA	1 cut(s)	632
TscAI	CASTG	5 cut(s)	168, 198, 237, 382, 423
TseI	GCWGC	2 cut(s)	482, 485
TspDTI	ATGAA	3 cut(s)	119, 340, 544
TspGWI	ACGGA	1 cut(s)	118
TspRI	CASTG	5 cut(s)	168, 198, 237, 382, 423
VneI	GTGCAC	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	80
XapI	RAATTY	2 cut(s)	461, 616
XceI	RCATGY	2 cut(s)	392, 563
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.