Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004030

Physical Location & Seq

Genomic Coordinates Forward (+)

10739855 .. 10740552

Gene Structure 698 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G25210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 135 bp

ATGATTAAGAAGAAATTGGGGAAGAAAATGAGGCAAAACAGGCCTATTCCTCACTGGATTCGTCTTCGTACCGACAACACCATCAGGTACAATGCTAAGCGTAGGCATTGGCGCAGAACCAAGCTTGGATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L39

Protein Analysis

44

Amino Acids

5.6

Weight (kDa)

12.0

Isoelectric Point (pI)

53.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L39	PF00832	2 - 42	2e-22	Ribosomal L39 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25210 AT4G31985
malus_domestica	MD02G1011500.v1.1 MD08G1060200.v1.1 MD15G1036400.v1.1 MD15G1157300.v1.1
prunus_persica	Prupe.1G390600_v2.0.a1 Prupe.7G258200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086361
rosa_laevigata	RLG00000015752 RLG00000024908 RLG00000027179 RLG00000032785 RLG00000035324
rosa_roxburghii	Rroxscaffold_1G00005040 Rroxscaffold_2G00154670 Rroxscaffold_3G00251010
rosa_rugosa	Rorug01G0466800 Rorug06G0368500.1
rosa_samantha	Rh1CG058200 Rh1CG281600 Rh2AG017000 Rh2DG193700 Rh3AG170400 Rh3BG149800 Rh3CG186800 Rh6BG489500 Rh6CG495000 Rh6DG480300 Rh7AG287500 Rh7CG307200
rosa_wichuraiana	Rw2G001440 Rw7G017270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	70, 89
AjuI	GAANNNNNNNTTGG	1 cut(s)	113
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
AoxI	GGCC	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	56
BccI	CCATC	1 cut(s)	89
BlpI	GCTNAGC	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	56
Bpu1102I	GCTNAGC	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	59
BshFI	GGCC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	43
Bsp1720I	GCTNAGC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstV2I	GAAGAC	1 cut(s)	56
BsuRI	GGCC	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	52
CfoI	GCGC	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	69, 88
CviJI	RGCY	2 cut(s)	43, 124
CviKI_1	RGCY	2 cut(s)	43, 124
CviQI	GTAC	2 cut(s)	69, 88
DdeI	CTNAG	1 cut(s)	96
Eco147I	AGGCCT	1 cut(s)	43
GlaI	GCGC	1 cut(s)	113
HaeIII	GGCC	1 cut(s)	43
HhaI	GCGC	1 cut(s)	114
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	2 cut(s)	58, 129
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	1 cut(s)	96
HspAI	GCGC	1 cut(s)	112
LpnPI	CCDG	3 cut(s)	25, 40, 70
MboII	GAAGA	3 cut(s)	22, 34, 56
MluCI	AATT	1 cut(s)	14
MnlI	CCTC	2 cut(s)	24, 60
MseI	TTAA	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	40
PceI	AGGCCT	1 cut(s)	43
PfeI	GAWTC	2 cut(s)	58, 129
RsaI	GTAC	2 cut(s)	70, 89
RsaNI	GTAC	2 cut(s)	69, 88
SaqAI	TTAA	1 cut(s)	6
SetI	ASST	2 cut(s)	89, 126
SgeI	CNNG	3 cut(s)	52, 67, 97
Sse9I	AATT	1 cut(s)	14
SseBI	AGGCCT	1 cut(s)	43
StuI	AGGCCT	1 cut(s)	43
TasI	AATT	1 cut(s)	14
TfiI	GAWTC	2 cut(s)	58, 129
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	1 cut(s)	59
TspRI	CASTG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.