Rh6DG480300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0004030
Physical Location & Seq
Reverse (-)
64490743 .. 64491105
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG480300.1

Sequence Viewer

Length: 363 bp
ATGAAAACTCTCTCCCGACCTAGCTCTCTCCCTGCTAGGGTTTGTGACCGCCGACCTTCAAGGCTGACGGCTCTACACCTTCTCCACGGCTTGTCCTTGGAGATCTTTGTAGGTTTAGTTCTACTCTTACTTCTTCTCCTCATTGTGGTGGATGGTGCAGCCGTTTGCCCTATCTTGACGGAGGTTAATGGCGATATTCATCGTTATGATAGATTTCGGGCTAGGATTGGATTATTGTTTGGGGATGGAGATCGATATGGGGCAGACTCTGTTCCTGGTTTCTTGAGTTGGGATGTTGGCAACCATGAGTTGCTCTATTGGTTTTTCCGGTTAGATTCATGGACTTTGAGGCGGATTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.57

Weight (kDa)

8.8

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 49, 352
AfiI CCNNNNNNNGG 2 cut(s) 37, 145
AgsI TTSAA 1 cut(s) 60
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 1 cut(s) 24
AluI AGCT 1 cut(s) 24
AlwNI CAGNNNCTG 1 cut(s) 269
ApeKI GCWGC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 170
BccI CCATC 2 cut(s) 146, 239
BceAI ACGGC 3 cut(s) 84, 103, 146
BciT130I CCWGG 1 cut(s) 276
BfaI CTAG 3 cut(s) 21, 36, 222
BglII AGATCT 1 cut(s) 102
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme1390I CCNGG 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 304
Bsa29I ATCGAT 1 cut(s) 253
BsaBI GATNNNNATC 2 cut(s) 198, 249
BsaJI CCNNGG 2 cut(s) 85, 96
BsaWI WCCGGW 1 cut(s) 327
BsaXI ACNNNNNCTCC 4 cut(s) 66, 96, 120, 150
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 145
Bse8I GATNNNNATC 2 cut(s) 198, 249
BseBI CCWGG 1 cut(s) 276
BseCI ATCGAT 1 cut(s) 253
BseDI CCNNGG 2 cut(s) 85, 96
BseGI GGATG 3 cut(s) 157, 250, 298
BseJI GATNNNNATC 2 cut(s) 198, 249
BseLI CCNNNNNNNGG 2 cut(s) 37, 145
BseRI GAGGAG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 170
BsgI GTGCAG 1 cut(s) 177
BshVI ATCGAT 1 cut(s) 253
BsiSI CCGG 1 cut(s) 328
BslI CCNNNNNNNGG 2 cut(s) 37, 145
Bsp143I GATC 2 cut(s) 102, 250
BspACI CCGC 2 cut(s) 49, 352
BspDI ATCGAT 1 cut(s) 253
BssECI CCNNGG 2 cut(s) 85, 96
BssMI GATC 2 cut(s) 102, 250
BssT1I CCWWGG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 276
BstDSI CCRYGG 1 cut(s) 85
BstF5I GGATG 3 cut(s) 157, 250, 298
BstKTI GATC 2 cut(s) 105, 253
BstMBI GATC 2 cut(s) 102, 250
BstNI CCWGG 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 170
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
Bsu15I ATCGAT 1 cut(s) 253
BsuTUI ATCGAT 1 cut(s) 253
BtgI CCRYGG 1 cut(s) 85
BtsCI GGATG 3 cut(s) 157, 250, 298
CaiI CAGNNNCTG 1 cut(s) 269
ClaI ATCGAT 1 cut(s) 253
CviAII CATG 2 cut(s) 305, 339
CviJI RGCY 6 cut(s) 24, 64, 71, 90, 161, 221
CviKI_1 RGCY 6 cut(s) 24, 64, 71, 90, 161, 221
DpnI GATC 2 cut(s) 104, 252
DpnII GATC 2 cut(s) 102, 250
Eco130I CCWWGG 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 2 cut(s) 308, 342
FaiI YATR 4 cut(s) 207, 258, 306, 340
FatI CATG 2 cut(s) 304, 338
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 3 cut(s) 164, 257, 305
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 3 cut(s) 21, 36, 222
GluI GCNGC 1 cut(s) 159
HapII CCGG 1 cut(s) 328
Hin1II CATG 2 cut(s) 308, 342
HinfI GANTC 2 cut(s) 266, 335
HpaII CCGG 1 cut(s) 328
Hpy188III TCNNGA 3 cut(s) 15, 175, 283
HpyAV CCTTC 2 cut(s) 66, 89
HpyCH4V TGCA 1 cut(s) 158
Hsp92II CATG 2 cut(s) 308, 342
Kzo9I GATC 2 cut(s) 102, 250
LpnPI CCDG 4 cut(s) 45, 261, 288, 341
Lsp1109I GCAGC 1 cut(s) 170
MaeI CTAG 3 cut(s) 21, 36, 222
MaeIII GTNAC 1 cut(s) 44
MalI GATC 2 cut(s) 104, 252
MboI GATC 2 cut(s) 102, 250
MboII GAAGA 1 cut(s) 125
MflI RGATCY 1 cut(s) 102
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 3 cut(s) 149, 175, 342
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 2 cut(s) 146, 204
MspI CCGG 1 cut(s) 328
MspR9I CCNGG 1 cut(s) 276
MvaI CCWGG 1 cut(s) 276
NdeII GATC 2 cut(s) 102, 250
NlaIII CATG 2 cut(s) 308, 342
NmuCI GTSAC 1 cut(s) 44
PfeI GAWTC 1 cut(s) 335
PkrI GCNGC 1 cut(s) 160
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PsrI GAACNNNNNNTAC 2 cut(s) 102, 134
PstNI CAGNNNCTG 1 cut(s) 269
PsuI RGATCY 1 cut(s) 102
RseI CAYNNNNRTG 2 cut(s) 146, 204
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 2 cut(s) 102, 250
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 276
SetI ASST 6 cut(s) 22, 26, 58, 81, 115, 186
SmiMI CAYNNNNRTG 2 cut(s) 146, 204
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
SsiI CCGC 2 cut(s) 49, 352
SspMI CTAG 3 cut(s) 21, 36, 222
StyD4I CCNGG 1 cut(s) 274
StyI CCWWGG 1 cut(s) 96
TaqI TCGA 1 cut(s) 253
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 3 cut(s) 17, 188, 327
TspGWI ACGGA 1 cut(s) 194
XspI CTAG 3 cut(s) 21, 36, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.