Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004030

Physical Location & Seq

Genomic Coordinates Reverse (-)

55294182 .. 55295066

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG281600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAAAACTCTCTCCCGACCTAGCACTCTCCCTGCTAGGGTTTGTGACCGCCGACCTTCAAGGCTGACGGCTCTACACCTTCTCCACTGCTTGTCCTTGGAGATCTTTGTAGGTTTAGGCCTACTCTTACTTCTTCTCCTCATTGTGGTGGATGGTGCAGCCTTTTGCCCTATCTTGACGGAAGTTAATGGCGATATTCATCGTCATGATGGATTTCGGGCTAGGATTGGATTATTGTTTAGGGATGGAGATCGATATGGGGCAAACTCTGTTCCTGGTTTCTTGAGCTGGGATGTTGGCGACCATAAGTTGCTCTTGGTTTTTCTGGTTAGATTCATGGACTTTGAGGCGAATTGGTTGACGACATCGGTTGATGGTGGTGGTGGCGACTTGTGGGTTCCAGTTATGCTGGGTCGTGTCTCTGACAGCGGCAGCTATTTAGGGGTTCTAGGCTACAGCGGTGGTTGTGCTGCATCTGGGTGTTGGTCGCAATTCTCTACTCGTGCCGGCGCTGGCAGCAACGATGCAGATTGGGACAAGGCTACCCTGTTAAAAGGGTTGGATCCGCTAAGTGGTGATGGTGGCAGTGATCATGCTGTGGTGGTGGACGACCAAGTTGTGATAGCGGCATCGGCGGCATTGCTGTCGTCGATGGAGATTCTATGCATGCTAGGGTTTGCCATGGTTTGGATTATTGGGCCTCAAGTGGGCTGGATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

25.64

Weight (kDa)

5.09

Isoelectric Point (pI)

30.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25210 AT4G31985
malus_domestica	MD02G1011500.v1.1 MD08G1060200.v1.1 MD15G1036400.v1.1 MD15G1157300.v1.1
prunus_persica	Prupe.1G390600_v2.0.a1 Prupe.7G258200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086361
rosa_laevigata	RLG00000015752 RLG00000024908 RLG00000027179 RLG00000032785 RLG00000035324
rosa_roxburghii	Rroxscaffold_1G00005040 Rroxscaffold_2G00154670 Rroxscaffold_3G00251010
rosa_rugosa	Rorug01G0466800 Rorug06G0368500.1
rosa_samantha	Rh1CG058200 Rh1CG281600 Rh2AG017000 Rh2DG193700 Rh3AG170400 Rh3BG149800 Rh3CG186800 Rh6BG489500 Rh6CG495000 Rh6DG480300 Rh7AG287500 Rh7CG307200
rosa_wichuraiana	Rw2G001440 Rw7G017270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	687
AciI	CCGC	6 cut(s)	49, 429, 459, 566, 626, 635
AclWI	GGATC	2 cut(s)	557, 570
AfiI	CCNNNNNNNGG	5 cut(s)	37, 145, 572, 687, 707
AgsI	TTSAA	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	2 cut(s)	288, 435
AluI	AGCT	2 cut(s)	288, 435
Alw26I	GTCTC	1 cut(s)	424
AlwI	GGATC	2 cut(s)	557, 570
AoxI	GGCC	2 cut(s)	118, 698
ApeKI	GCWGC	4 cut(s)	158, 432, 470, 516
AspLEI	GCGC	1 cut(s)	512
AspS9I	GGNCC	1 cut(s)	698
AsuHPI	GGTGA	1 cut(s)	587
BamHI	GGATCC	1 cut(s)	562
BauI	CACGAG	1 cut(s)	501
BbvI	GCAGC	4 cut(s)	170, 444, 457, 528
BccI	CCATC	7 cut(s)	146, 203, 239, 368, 572, 646, 709
BceAI	ACGGC	1 cut(s)	84
BcgI	CGANNNNNNTGC	2 cut(s)	627, 661
BciT130I	CCWGG	1 cut(s)	276
BclI	TGATCA	1 cut(s)	589
BcoDI	GTCTC	1 cut(s)	424
BfaI	CTAG	5 cut(s)	21, 36, 222, 449, 671
BfmI	CTRYAG	1 cut(s)	454
BfoI	RGCGCY	1 cut(s)	513
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	7 cut(s)	159, 430, 433, 471, 517, 627, 636
BlsI	GCNGC	7 cut(s)	160, 431, 434, 472, 518, 628, 637
Bme1390I	CCNGG	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	698
BmiI	GGNNCC	2 cut(s)	399, 564
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	3 cut(s)	482, 514, 638
BpuEI	CTTGAG	2 cut(s)	304, 687
Bsa29I	ATCGAT	1 cut(s)	253
BsaBI	GATNNNNATC	2 cut(s)	198, 249
BsaJI	CCNNGG	2 cut(s)	96, 681
BsaXI	ACNNNNNCTCC	4 cut(s)	66, 96, 120, 150
Bsc4I	CCNNNNNNNGG	5 cut(s)	37, 145, 572, 687, 707
Bse118I	RCCGGY	1 cut(s)	506
Bse1I	ACTGG	1 cut(s)	401
Bse3DI	GCAATG	1 cut(s)	638
Bse8I	GATNNNNATC	2 cut(s)	198, 249
BseBI	CCWGG	1 cut(s)	276
BseCI	ATCGAT	1 cut(s)	253
BseDI	CCNNGG	2 cut(s)	96, 681
BseGI	GGATG	4 cut(s)	157, 250, 298, 720
BseJI	GATNNNNATC	2 cut(s)	198, 249
BseLI	CCNNNNNNNGG	5 cut(s)	37, 145, 572, 687, 707
BseMI	GCAATG	1 cut(s)	638
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	4 cut(s)	170, 444, 457, 528
BseYI	CCCAGC	2 cut(s)	288, 409
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	120, 700
BshVI	ATCGAT	1 cut(s)	253
BsiSI	CCGG	1 cut(s)	507
BslFI	GGGAC	1 cut(s)	548
BslI	CCNNNNNNNGG	5 cut(s)	37, 145, 572, 687, 707
BsmAI	GTCTC	1 cut(s)	424
BsmFI	GGGAC	1 cut(s)	548
BsnI	GGCC	2 cut(s)	120, 700
Bsp143I	GATC	4 cut(s)	102, 250, 562, 589
Bsp19I	CCATGG	1 cut(s)	681
BspACI	CCGC	6 cut(s)	49, 429, 459, 566, 626, 635
BspANI	GGCC	2 cut(s)	120, 700
BspDI	ATCGAT	1 cut(s)	253
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	2 cut(s)	399, 564
BspPI	GGATC	2 cut(s)	557, 570
BsrDI	GCAATG	1 cut(s)	638
BsrFI	RCCGGY	1 cut(s)	506
BsrI	ACTGG	1 cut(s)	401
BssAI	RCCGGY	1 cut(s)	506
BssECI	CCNNGG	2 cut(s)	96, 681
BssMI	GATC	4 cut(s)	102, 250, 562, 589
BssSI	CACGAG	1 cut(s)	501
BssT1I	CCWWGG	2 cut(s)	96, 681
Bst2BI	CACGAG	1 cut(s)	501
Bst2UI	CCWGG	1 cut(s)	276
BstC8I	GCNNGC	3 cut(s)	508, 514, 668
BstDEI	CTNAG	1 cut(s)	569
BstDSI	CCRYGG	1 cut(s)	681
BstF5I	GGATG	4 cut(s)	157, 250, 298, 720
BstH2I	RGCGCY	1 cut(s)	513
BstHHI	GCGC	1 cut(s)	512
BstKTI	GATC	4 cut(s)	105, 253, 565, 592
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	4 cut(s)	102, 250, 562, 589
BstMWI	GCNNNNNNNGC	3 cut(s)	516, 632, 635
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	670
BstSCI	CCNGG	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	454
BstV1I	GCAGC	4 cut(s)	170, 444, 457, 528
BstX2I	RGATCY	2 cut(s)	102, 562
BstYI	RGATCY	2 cut(s)	102, 562
Bsu15I	ATCGAT	1 cut(s)	253
BsuRI	GGCC	2 cut(s)	120, 700
BsuTUI	ATCGAT	1 cut(s)	253
BtgI	CCRYGG	1 cut(s)	681
BtsCI	GGATG	4 cut(s)	157, 250, 298, 720
BtsI	GCAGTG	2 cut(s)	85, 592
BtsIMutI	CAGTG	2 cut(s)	85, 592
Cac8I	GCNNGC	3 cut(s)	508, 514, 668
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	1 cut(s)	512
Cfr10I	RCCGGY	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	698
ClaI	ATCGAT	1 cut(s)	253
CviAII	CATG	5 cut(s)	206, 337, 593, 667, 682
DdeI	CTNAG	1 cut(s)	569
DpnI	GATC	4 cut(s)	104, 252, 564, 591
DpnII	GATC	4 cut(s)	102, 250, 562, 589
Eco130I	CCWWGG	2 cut(s)	96, 681
Eco147I	AGGCCT	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	2 cut(s)	96, 681
EcoT22I	ATGCAT	1 cut(s)	668
ErhI	CCWWGG	2 cut(s)	96, 681
FaeI	CATG	5 cut(s)	209, 340, 596, 670, 685
FaiI	YATR	9 cut(s)	207, 258, 306, 338, 407, 594, 664, 668, 683
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FaqI	GGGAC	1 cut(s)	548
FatI	CATG	5 cut(s)	205, 336, 592, 666, 681
FbaI	TGATCA	1 cut(s)	589
Fnu4HI	GCNGC	7 cut(s)	159, 430, 433, 471, 517, 627, 636
FokI	GGATG	3 cut(s)	164, 257, 305
Fsp4HI	GCNGC	7 cut(s)	159, 430, 433, 471, 517, 627, 636
FspBI	CTAG	5 cut(s)	21, 36, 222, 449, 671
GlaI	GCGC	1 cut(s)	511
GluI	GCNGC	7 cut(s)	159, 430, 433, 471, 517, 627, 636
GsaI	CCCAGC	2 cut(s)	292, 413
HaeII	RGCGCY	1 cut(s)	513
HaeIII	GGCC	2 cut(s)	120, 700
HapII	CCGG	1 cut(s)	507
HhaI	GCGC	1 cut(s)	512
Hin1II	CATG	5 cut(s)	209, 340, 596, 670, 685
Hin6I	GCGC	1 cut(s)	510
HinP1I	GCGC	1 cut(s)	510
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HinfI	GANTC	2 cut(s)	333, 658
HpaII	CCGG	1 cut(s)	507
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	2 cut(s)	360, 607
Hpy188I	TCNGA	1 cut(s)	424
Hpy188III	TCNNGA	4 cut(s)	15, 175, 206, 283
Hpy8I	GTNNAC	2 cut(s)	360, 607
Hpy99I	CGWCG	1 cut(s)	652
HpyAV	CCTTC	2 cut(s)	66, 89
HpyCH4V	TGCA	4 cut(s)	158, 473, 527, 666
HpyF10VI	GCNNNNNNNGC	3 cut(s)	516, 632, 635
HpyF3I	CTNAG	1 cut(s)	569
Hsp92II	CATG	5 cut(s)	209, 340, 596, 670, 685
HspAI	GCGC	1 cut(s)	510
KroI	GCCGGC	1 cut(s)	506
KroNI	GCCGGC	1 cut(s)	508
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	4 cut(s)	102, 250, 562, 589
Lsp1109I	GCAGC	4 cut(s)	170, 444, 457, 528
LweI	GCATC	3 cut(s)	482, 514, 638
MaeI	CTAG	5 cut(s)	21, 36, 222, 449, 671
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	4 cut(s)	104, 252, 564, 591
MboI	GATC	4 cut(s)	102, 250, 562, 589
MboII	GAAGA	1 cut(s)	125
MflI	RGATCY	2 cut(s)	102, 562
MluCI	AATT	2 cut(s)	352, 491
MmeI	TCCRAC	1 cut(s)	540
MnlI	CCTC	3 cut(s)	149, 340, 711
Mph1103I	ATGCAT	1 cut(s)	668
MroNI	GCCGGC	1 cut(s)	506
MseI	TTAA	2 cut(s)	186, 551
MslI	CAYNNNNRTG	3 cut(s)	146, 204, 478
MspA1I	CMGCKG	2 cut(s)	429, 459
MspI	CCGG	1 cut(s)	507
MspR9I	CCNGG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	3 cut(s)	516, 632, 635
NaeI	GCCGGC	1 cut(s)	508
NcoI	CCATGG	1 cut(s)	681
NdeII	GATC	4 cut(s)	102, 250, 562, 589
NgoMIV	GCCGGC	1 cut(s)	506
NlaIII	CATG	5 cut(s)	209, 340, 596, 670, 685
NlaIV	GGNNCC	2 cut(s)	399, 564
NmuCI	GTSAC	1 cut(s)	44
NsiI	ATGCAT	1 cut(s)	668
NspI	RCATGY	1 cut(s)	670
PaeI	GCATGC	1 cut(s)	670
PagI	TCATGA	1 cut(s)	205
PceI	AGGCCT	1 cut(s)	120
PdiI	GCCGGC	1 cut(s)	508
PfeI	GAWTC	2 cut(s)	333, 658
PflMI	CCANNNNNTGG	1 cut(s)	687
PkrI	GCNGC	7 cut(s)	160, 431, 434, 472, 518, 628, 637
Psp6I	CCWGG	1 cut(s)	274
PspFI	CCCAGC	2 cut(s)	288, 409
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	2 cut(s)	399, 564
PspPI	GGNCC	1 cut(s)	698
PsuI	RGATCY	2 cut(s)	102, 562
RseI	CAYNNNNRTG	3 cut(s)	146, 204, 478
SaqAI	TTAA	2 cut(s)	186, 551
SatI	GCNGC	7 cut(s)	159, 430, 433, 471, 517, 627, 636
Sau3AI	GATC	4 cut(s)	102, 250, 562, 589
Sau96I	GGNCC	1 cut(s)	698
ScrFI	CCNGG	1 cut(s)	276
SetI	ASST	6 cut(s)	22, 58, 81, 115, 290, 437
SfaNI	GCATC	3 cut(s)	482, 514, 638
SfcI	CTRYAG	1 cut(s)	454
SmiMI	CAYNNNNRTG	3 cut(s)	146, 204, 478
SmlI	CTYRAG	2 cut(s)	283, 702
SmoI	CTYRAG	2 cut(s)	283, 702
SphI	GCATGC	1 cut(s)	670
Sse9I	AATT	2 cut(s)	352, 491
SseBI	AGGCCT	1 cut(s)	120
SsiI	CCGC	6 cut(s)	49, 429, 459, 566, 626, 635
SspMI	CTAG	5 cut(s)	21, 36, 222, 449, 671
StuI	AGGCCT	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	2 cut(s)	96, 681
TaqI	TCGA	2 cut(s)	253, 650
TasI	AATT	2 cut(s)	352, 491
TauI	GCSGC	3 cut(s)	432, 629, 638
TfiI	GAWTC	2 cut(s)	333, 658
Tru1I	TTAA	2 cut(s)	186, 551
Tru9I	TTAA	2 cut(s)	186, 551
TscAI	CASTG	2 cut(s)	92, 592
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	4 cut(s)	158, 432, 470, 516
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	3 cut(s)	17, 188, 325
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	2 cut(s)	92, 592
Van91I	CCANNNNNTGG	1 cut(s)	687
XceI	RCATGY	1 cut(s)	670
XspI	CTAG	5 cut(s)	21, 36, 222, 449, 671
Zsp2I	ATGCAT	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.