Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004030

Physical Location & Seq

Genomic Coordinates Forward (+)

17744809 .. 17745405

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG193700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAAAATTCTCTCTCGACCTAGCTTTCTTCCTGCTAGGGTTTCTGACCGCCGACTTTCAAATTTGATGGCTCTACACCTTCTTCATTGCTTGTCCTTGGAGACTATTATAGGTTTAAGCCTACTCCTAATTCTTCTCTTCTCTGTGGGGGATGAAGCGGTTGCAGCCGAGGAGGTTGTTGATGTTCTTCATTGTCATGGTGGATCTCAGGGCCGGGGTACAATGCCTGACAGTCCTTGTGGTGAATTTCATGACGGCGGCGGTGATTGGAACGACGACAGCAGTGGATCCATCGGTGGACGTGGTGGCTCTGGTTCTGACGGCGGCAGTGGCTTGGAGGAATCTGCTAGGGCTGCTAAAAGCTGGGCTTATGAGTTATGGGGCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

13.48

Weight (kDa)

4.88

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25210 AT4G31985
malus_domestica	MD02G1011500.v1.1 MD08G1060200.v1.1 MD15G1036400.v1.1 MD15G1157300.v1.1
prunus_persica	Prupe.1G390600_v2.0.a1 Prupe.7G258200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086361
rosa_laevigata	RLG00000015752 RLG00000024908 RLG00000027179 RLG00000032785 RLG00000035324
rosa_roxburghii	Rroxscaffold_1G00005040 Rroxscaffold_2G00154670 Rroxscaffold_3G00251010
rosa_rugosa	Rorug01G0466800 Rorug06G0368500.1
rosa_samantha	Rh1CG058200 Rh1CG281600 Rh2AG017000 Rh2DG193700 Rh3AG170400 Rh3BG149800 Rh3CG186800 Rh6BG489500 Rh6CG495000 Rh6DG480300 Rh7AG287500 Rh7CG307200
rosa_wichuraiana	Rw2G001440 Rw7G017270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	49, 158, 258, 261, 324
AclWI	GGATC	3 cut(s)	211, 282, 295
AcsI	RAATTY	3 cut(s)	6, 61, 245
AfaI	GTAC	1 cut(s)	220
AgsI	TTSAA	1 cut(s)	60
AjiI	CACGTC	1 cut(s)	302
AluBI	AGCT	2 cut(s)	24, 363
AluI	AGCT	2 cut(s)	24, 363
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	3 cut(s)	211, 282, 295
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	164, 353
ApoI	RAATTY	3 cut(s)	6, 61, 245
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	254, 275
BamHI	GGATCC	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	386
BbvI	GCAGC	2 cut(s)	176, 340
BccI	CCATC	2 cut(s)	61, 299
BceAI	ACGGC	2 cut(s)	271, 337
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	3 cut(s)	21, 36, 348
BisI	GCNGC	4 cut(s)	165, 259, 325, 354
BlsI	GCNGC	4 cut(s)	166, 260, 326, 355
Bme1390I	CCNGG	1 cut(s)	215
BmgBI	CACGTC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	2 cut(s)	289, 385
BmrFI	CCNGG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	215
BsaJI	CCNNGG	3 cut(s)	96, 168, 214
Bse3DI	GCAATG	1 cut(s)	85
BseDI	CCNNGG	3 cut(s)	96, 168, 214
BseGI	GGATG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	85
BseMII	CTCAG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	2 cut(s)	176, 340
BseYI	CCCAGC	1 cut(s)	363
BshFI	GGCC	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	214
BsmAI	GTCTC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp143I	GATC	2 cut(s)	203, 287
BspACI	CCGC	5 cut(s)	49, 158, 258, 261, 324
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	1 cut(s)	220
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	2 cut(s)	289, 385
BspPI	GGATC	3 cut(s)	211, 282, 295
BsrDI	GCAATG	1 cut(s)	85
BssECI	CCNNGG	3 cut(s)	96, 168, 214
BssMI	GATC	2 cut(s)	203, 287
BssT1I	CCWWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	157
BstKTI	GATC	2 cut(s)	206, 290
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	2 cut(s)	203, 287
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 330, 353
BstSCI	CCNGG	1 cut(s)	213
BstV1I	GCAGC	2 cut(s)	176, 340
BstX2I	RGATCY	2 cut(s)	203, 287
BstYI	RGATCY	2 cut(s)	203, 287
BsuRI	GGCC	1 cut(s)	213
BtrI	CACGTC	1 cut(s)	302
BtsCI	GGATG	1 cut(s)	157
BtsI	GCAGTG	2 cut(s)	289, 334
BtsIMutI	CAGTG	2 cut(s)	289, 334
CciI	TCATGA	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	2 cut(s)	197, 251
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	2 cut(s)	205, 289
DpnII	GATC	2 cut(s)	203, 287
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	386
EcoT14I	CCWWGG	1 cut(s)	96
EcoT38I	GRGCYC	1 cut(s)	386
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	2 cut(s)	200, 254
FaiI	YATR	5 cut(s)	110, 198, 252, 372, 379
FalI	AAGNNNNNCTT	2 cut(s)	352, 384
FatI	CATG	2 cut(s)	196, 250
Fnu4HI	GCNGC	4 cut(s)	165, 259, 325, 354
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	1 cut(s)	386
Fsp4HI	GCNGC	4 cut(s)	165, 259, 325, 354
FspBI	CTAG	3 cut(s)	21, 36, 348
GluI	GCNGC	4 cut(s)	165, 259, 325, 354
GsaI	CCCAGC	1 cut(s)	367
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	1 cut(s)	214
Hin1II	CATG	2 cut(s)	200, 254
HinfI	GANTC	1 cut(s)	341
HpaII	CCGG	1 cut(s)	214
HphI	GGTGA	2 cut(s)	254, 275
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	2 cut(s)	46, 319
Hpy188III	TCNNGA	2 cut(s)	15, 251
Hpy8I	GTNNAC	1 cut(s)	299
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	89
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	1 cut(s)	164
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 330, 353
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	2 cut(s)	200, 254
Kzo9I	GATC	2 cut(s)	203, 287
LmnI	GCTCC	1 cut(s)	389
LpnPI	CCDG	6 cut(s)	45, 194, 227, 240, 297, 349
Lsp1109I	GCAGC	2 cut(s)	176, 340
MaeI	CTAG	3 cut(s)	21, 36, 348
MaeII	ACGT	1 cut(s)	301
MalI	GATC	2 cut(s)	205, 289
MboI	GATC	2 cut(s)	203, 287
MboII	GAAGA	5 cut(s)	20, 74, 125, 130, 179
MflI	RGATCY	2 cut(s)	203, 287
MhlI	GDGCHC	1 cut(s)	386
MluCI	AATT	4 cut(s)	6, 61, 129, 245
MnlI	CCTC	3 cut(s)	163, 166, 331
MseI	TTAA	1 cut(s)	116
MslI	CAYNNNNRTG	1 cut(s)	195
MspI	CCGG	1 cut(s)	214
MspR9I	CCNGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	3 cut(s)	164, 330, 353
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	2 cut(s)	203, 287
NlaIII	CATG	2 cut(s)	200, 254
NlaIV	GGNNCC	2 cut(s)	289, 385
NmeAIII	GCCGAG	1 cut(s)	193
PagI	TCATGA	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	4 cut(s)	166, 260, 326, 355
PspFI	CCCAGC	1 cut(s)	363
PspN4I	GGNNCC	2 cut(s)	289, 385
PspPI	GGNCC	1 cut(s)	211
PsuI	RGATCY	2 cut(s)	203, 287
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	4 cut(s)	165, 259, 325, 354
Sau3AI	GATC	2 cut(s)	203, 287
Sau96I	GGNCC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	386
SetI	ASST	7 cut(s)	22, 26, 81, 115, 177, 304, 365
SmiMI	CAYNNNNRTG	1 cut(s)	195
Sse9I	AATT	4 cut(s)	6, 61, 129, 245
SsiI	CCGC	5 cut(s)	49, 158, 258, 261, 324
SspMI	CTAG	3 cut(s)	21, 36, 348
StyD4I	CCNGG	1 cut(s)	213
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	233
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	1 cut(s)	16
TasI	AATT	4 cut(s)	6, 61, 129, 245
TauI	GCSGC	2 cut(s)	261, 327
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TscAI	CASTG	2 cut(s)	289, 334
TseI	GCWGC	2 cut(s)	164, 353
TspDTI	ATGAA	5 cut(s)	17, 74, 168, 179, 239
TspRI	CASTG	2 cut(s)	289, 334
XapI	RAATTY	3 cut(s)	6, 61, 245
XspI	CTAG	3 cut(s)	21, 36, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.