Rh3AG170400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0004030
Physical Location & Seq
Forward (+)
15775951 .. 15776286
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG170400.1

Sequence Viewer

Length: 336 bp
ATGTTGGGTCGTGTCTCTAACAACGGCAGCTATTTAGGGGTTCTAGGCTACAGCGGTGGTTGTGCTGCATCTGGGTGTTGGTCGCAATTCTCTTCTCGTGCCGGCGCTGGCAGCAACGATGCGGATTGGGACAAGGCTACCCTGTTAAAAGGGTTGGATCCGCTAAGTGGTGATGGTGGCAATGATCATGCTGTGGTGGTAGACGACCAAGTTGTGATAGCGGCACCGGCGGCATTGCTGCAGTCGATGGAGTTTCTGTGCATGCTAGGGGTTTGCCATGGTTTGGAATATTGGGCCTCAAGTGGGCTGGATGGATTGGGTCTCTATGGCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

11.29

Weight (kDa)

4.22

Isoelectric Point (pI)

24.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 223
AccB7I CCANNNNNTGG 1 cut(s) 283
AccI GTMKAC 1 cut(s) 201
AciI CCGC 5 cut(s) 54, 122, 161, 221, 230
AclWI GGATC 2 cut(s) 152, 165
AfiI CCNNNNNNNGG 3 cut(s) 167, 283, 303
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw26I GTCTC 2 cut(s) 19, 326
AlwI GGATC 2 cut(s) 152, 165
AoxI GGCC 2 cut(s) 294, 328
ApeKI GCWGC 4 cut(s) 27, 65, 111, 238
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 294, 329
AsuHPI GGTGA 1 cut(s) 182
BamHI GGATCC 1 cut(s) 157
BanI GGYRCC 1 cut(s) 223
BauI CACGAG 1 cut(s) 96
BbvI GCAGC 4 cut(s) 39, 52, 123, 225
BccI CCATC 3 cut(s) 167, 241, 305
BceAI ACGGC 1 cut(s) 40
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 2 cut(s) 19, 326
BfaI CTAG 2 cut(s) 44, 266
BfmI CTRYAG 2 cut(s) 49, 239
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 6 cut(s) 28, 66, 112, 222, 231, 239
BlsI GCNGC 6 cut(s) 29, 67, 113, 223, 232, 240
BmgT120I GGNCC 2 cut(s) 294, 329
BmiI GGNNCC 2 cut(s) 159, 225
BmsI GCATC 2 cut(s) 77, 109
BpuEI CTTGAG 1 cut(s) 283
BsaI GGTCTC 1 cut(s) 326
BsaJI CCNNGG 1 cut(s) 277
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 283, 303
Bse118I RCCGGY 2 cut(s) 101, 226
Bse3DI GCAATG 2 cut(s) 187, 233
BseDI CCNNGG 1 cut(s) 277
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 3 cut(s) 167, 283, 303
BseMI GCAATG 2 cut(s) 187, 233
BseXI GCAGC 4 cut(s) 39, 52, 123, 225
BshFI GGCC 2 cut(s) 296, 330
BshNI GGYRCC 1 cut(s) 223
BsiSI CCGG 2 cut(s) 102, 227
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 3 cut(s) 167, 283, 303
BsmAI GTCTC 2 cut(s) 19, 326
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 2 cut(s) 296, 330
Bso31I GGTCTC 1 cut(s) 326
Bsp143I GATC 2 cut(s) 157, 184
Bsp19I CCATGG 1 cut(s) 277
BspACI CCGC 5 cut(s) 54, 122, 161, 221, 230
BspANI GGCC 2 cut(s) 296, 330
BspLI GGNNCC 2 cut(s) 159, 225
BspMAI CTGCAG 1 cut(s) 243
BspPI GGATC 2 cut(s) 152, 165
BspT107I GGYRCC 1 cut(s) 223
BspTNI GGTCTC 1 cut(s) 326
BsrDI GCAATG 2 cut(s) 187, 233
BsrFI RCCGGY 2 cut(s) 101, 226
BssAI RCCGGY 2 cut(s) 101, 226
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 2 cut(s) 157, 184
BssSI CACGAG 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 277
Bst2BI CACGAG 1 cut(s) 96
Bst6I CTCTTC 1 cut(s) 97
BstC8I GCNNGC 3 cut(s) 103, 109, 263
BstDEI CTNAG 1 cut(s) 164
BstDSI CCRYGG 1 cut(s) 277
BstF5I GGATG 1 cut(s) 316
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 2 cut(s) 160, 187
BstMAI GTCTC 2 cut(s) 19, 326
BstMBI GATC 2 cut(s) 157, 184
BstMWI GCNNNNNNNGC 3 cut(s) 111, 227, 230
BstNSI RCATGY 1 cut(s) 265
BstSFI CTRYAG 2 cut(s) 49, 239
BstV1I GCAGC 4 cut(s) 39, 52, 123, 225
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BsuRI GGCC 2 cut(s) 296, 330
BtgI CCRYGG 1 cut(s) 277
BtsCI GGATG 1 cut(s) 316
Cac8I GCNNGC 3 cut(s) 103, 109, 263
CfoI GCGC 1 cut(s) 107
Cfr10I RCCGGY 2 cut(s) 101, 226
Cfr13I GGNCC 2 cut(s) 294, 329
CviAII CATG 3 cut(s) 188, 262, 278
CviJI RGCY 6 cut(s) 30, 48, 137, 296, 307, 330
CviKI_1 RGCY 6 cut(s) 30, 48, 137, 296, 307, 330
DdeI CTNAG 1 cut(s) 164
DpnI GATC 2 cut(s) 159, 186
DpnII GATC 2 cut(s) 157, 184
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 277
Eco31I GGTCTC 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 277
FaeI CATG 3 cut(s) 191, 265, 281
FaiI YATR 5 cut(s) 189, 263, 279, 327, 334
FaqI GGGAC 1 cut(s) 143
FatI CATG 3 cut(s) 187, 261, 277
FbaI TGATCA 1 cut(s) 184
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 6 cut(s) 28, 66, 112, 222, 231, 239
FokI GGATG 1 cut(s) 323
Fsp4HI GCNGC 6 cut(s) 28, 66, 112, 222, 231, 239
FspBI CTAG 2 cut(s) 44, 266
GlaI GCGC 1 cut(s) 106
GluI GCNGC 6 cut(s) 28, 66, 112, 222, 231, 239
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 2 cut(s) 296, 330
HapII CCGG 2 cut(s) 102, 227
HhaI GCGC 1 cut(s) 107
Hin1II CATG 3 cut(s) 191, 265, 281
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HpaII CCGG 2 cut(s) 102, 227
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 202
Hpy8I GTNNAC 1 cut(s) 202
HpyCH4V TGCA 3 cut(s) 68, 241, 261
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 227, 230
HpyF3I CTNAG 1 cut(s) 164
Hsp92II CATG 3 cut(s) 191, 265, 281
HspAI GCGC 1 cut(s) 105
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 2 cut(s) 157, 184
LpnPI CCDG 6 cut(s) 57, 93, 115, 155, 240, 293
Lsp1109I GCAGC 4 cut(s) 39, 52, 123, 225
LweI GCATC 2 cut(s) 77, 109
MaeI CTAG 2 cut(s) 44, 266
MalI GATC 2 cut(s) 159, 186
MboI GATC 2 cut(s) 157, 184
MboII GAAGA 1 cut(s) 84
MflI RGATCY 1 cut(s) 157
MluCI AATT 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 1 cut(s) 307
MroNI GCCGGC 1 cut(s) 101
MseI TTAA 1 cut(s) 146
MslI CAYNNNNRTG 1 cut(s) 73
MspA1I CMGCKG 1 cut(s) 54
MspI CCGG 2 cut(s) 102, 227
MwoI GCNNNNNNNGC 3 cut(s) 111, 227, 230
NaeI GCCGGC 1 cut(s) 103
NcoI CCATGG 1 cut(s) 277
NdeII GATC 2 cut(s) 157, 184
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 3 cut(s) 191, 265, 281
NlaIV GGNNCC 2 cut(s) 159, 225
NspI RCATGY 1 cut(s) 265
PaeI GCATGC 1 cut(s) 265
PdiI GCCGGC 1 cut(s) 103
PflMI CCANNNNNTGG 1 cut(s) 283
PkrI GCNGC 6 cut(s) 29, 67, 113, 223, 232, 240
PspN4I GGNNCC 2 cut(s) 159, 225
PspPI GGNCC 2 cut(s) 294, 329
PstI CTGCAG 1 cut(s) 243
PsuI RGATCY 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 73
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 6 cut(s) 28, 66, 112, 222, 231, 239
Sau3AI GATC 2 cut(s) 157, 184
Sau96I GGNCC 2 cut(s) 294, 329
SetI ASST 1 cut(s) 32
SfaNI GCATC 2 cut(s) 77, 109
SfcI CTRYAG 2 cut(s) 49, 239
SgrAI CRCCGGYG 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
SphI GCATGC 1 cut(s) 265
Sse9I AATT 1 cut(s) 86
SsiI CCGC 5 cut(s) 54, 122, 161, 221, 230
SspI AATATT 1 cut(s) 290
SspMI CTAG 2 cut(s) 44, 266
StyI CCWWGG 1 cut(s) 277
TaqI TCGA 1 cut(s) 245
TasI AATT 1 cut(s) 86
TauI GCSGC 2 cut(s) 224, 233
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TseI GCWGC 4 cut(s) 27, 65, 111, 238
Van91I CCANNNNNTGG 1 cut(s) 283
XceI RCATGY 1 cut(s) 265
XmiI GTMKAC 1 cut(s) 201
XspI CTAG 2 cut(s) 44, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.