Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004030

Physical Location & Seq

Genomic Coordinates Forward (+)

4785043 .. 4785884

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1060200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGCCGTCGCACAAGAGCTTCATGATCAAGAAGAAGCTGGCGAAGAAGATGAGGCAGAACAGGCCCATCCCTCACTGGATCCGTATGAGGACCGACAACACCATCAGGTACAATGCGAAACGCAGGCACTGGCGCCGCACCAAGCTCGGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L39

Protein Analysis

52

Amino Acids

6.45

Weight (kDa)

12.0

Isoelectric Point (pI)

60.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L39	PF00832	9 - 49	1.4e-22	Ribosomal L39 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25210 AT4G31985
malus_domestica	MD02G1011500.v1.1 MD08G1060200.v1.1 MD15G1036400.v1.1 MD15G1157300.v1.1
prunus_persica	Prupe.1G390600_v2.0.a1 Prupe.7G258200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086361
rosa_laevigata	RLG00000015752 RLG00000024908 RLG00000027179 RLG00000032785 RLG00000035324
rosa_roxburghii	Rroxscaffold_1G00005040 Rroxscaffold_2G00154670 Rroxscaffold_3G00251010
rosa_rugosa	Rorug01G0466800 Rorug06G0368500.1
rosa_samantha	Rh1CG058200 Rh1CG281600 Rh2AG017000 Rh2DG193700 Rh3AG170400 Rh3BG149800 Rh3CG186800 Rh6BG489500 Rh6CG495000 Rh6DG480300 Rh7AG287500 Rh7CG307200
rosa_wichuraiana	Rw2G001440 Rw7G017270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	132
AciI	CCGC	1 cut(s)	136
AclWI	GGATC	2 cut(s)	73, 86
AcyI	GRCGYC	1 cut(s)	133
AfaI	GTAC	1 cut(s)	110
AjuI	GAANNNNNNNTTGG	1 cut(s)	134
AluBI	AGCT	3 cut(s)	18, 37, 145
AluI	AGCT	3 cut(s)	18, 37, 145
AlwI	GGATC	2 cut(s)	73, 86
AlwNI	CAGNNNCTG	1 cut(s)	129
AoxI	GGCC	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	2 cut(s)	63, 90
AvaII	GGWCC	1 cut(s)	90
BamHI	GGATCC	1 cut(s)	78
BanI	GGYRCC	1 cut(s)	132
BccI	CCATC	2 cut(s)	74, 110
BcgI	CGANNNNNNTGC	1 cut(s)	127
BclI	TGATCA	1 cut(s)	24
BfoI	RGCGCY	1 cut(s)	136
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	2 cut(s)	63, 90
BmiI	GGNNCC	2 cut(s)	80, 134
BsaHI	GRCGYC	1 cut(s)	133
Bse1I	ACTGG	2 cut(s)	80, 134
BseGI	GGATG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	80, 134
BshFI	GGCC	1 cut(s)	64
BshNI	GGYRCC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	24, 78
BspACI	CCGC	1 cut(s)	136
BspANI	GGCC	1 cut(s)	64
BspHI	TCATGA	1 cut(s)	21
BspLI	GGNNCC	2 cut(s)	80, 134
BspPI	GGATC	2 cut(s)	73, 86
BspT107I	GGYRCC	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	80, 134
BssMI	GATC	2 cut(s)	24, 78
BssNI	GRCGYC	1 cut(s)	133
BstACI	GRCGYC	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	39, 125
BstF5I	GGATG	1 cut(s)	66
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	2 cut(s)	27, 81
BstMBI	GATC	2 cut(s)	24, 78
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	73, 127
Cac8I	GCNNGC	2 cut(s)	39, 125
CaiI	CAGNNNCTG	1 cut(s)	129
CciI	TCATGA	1 cut(s)	21
CfoI	GCGC	1 cut(s)	135
Cfr13I	GGNCC	2 cut(s)	63, 90
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	4 cut(s)	18, 37, 64, 145
CviKI_1	RGCY	4 cut(s)	18, 37, 64, 145
CviQI	GTAC	1 cut(s)	109
DinI	GGCGCC	1 cut(s)	134
DpnI	GATC	2 cut(s)	26, 80
DpnII	GATC	2 cut(s)	24, 78
Eco47I	GGWCC	1 cut(s)	90
EgeI	GGCGCC	1 cut(s)	134
EheI	GGCGCC	1 cut(s)	134
FaeI	CATG	1 cut(s)	25
FaiI	YATR	2 cut(s)	23, 86
FatI	CATG	1 cut(s)	21
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	1 cut(s)	136
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	136
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	1 cut(s)	136
HaeII	RGCGCY	1 cut(s)	136
HaeIII	GGCC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	135
Hin1I	GRCGYC	1 cut(s)	133
Hin1II	CATG	1 cut(s)	25
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HinfI	GANTC	1 cut(s)	150
Hpy188I	TCNGA	2 cut(s)	149, 155
Hpy188III	TCNNGA	2 cut(s)	22, 28
Hpy99I	CGWCG	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
Hsp92I	GRCGYC	1 cut(s)	133
Hsp92II	CATG	1 cut(s)	25
HspAI	GCGC	1 cut(s)	133
KasI	GGCGCC	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	24, 78
LpnPI	CCDG	6 cut(s)	23, 46, 61, 91, 109, 115
MalI	GATC	2 cut(s)	26, 80
MboI	GATC	2 cut(s)	24, 78
MboII	GAAGA	3 cut(s)	43, 55, 58
MflI	RGATCY	1 cut(s)	78
Mly113I	GGCGCC	1 cut(s)	133
MnlI	CCTC	3 cut(s)	45, 81, 81
MwoI	GCNNNNNNNGC	1 cut(s)	61
NarI	GGCGCC	1 cut(s)	133
NdeII	GATC	2 cut(s)	24, 78
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	2 cut(s)	80, 134
PagI	TCATGA	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	137
PluTI	GGCGCC	1 cut(s)	136
PspN4I	GGNNCC	2 cut(s)	80, 134
PspPI	GGNCC	2 cut(s)	63, 90
PstNI	CAGNNNCTG	1 cut(s)	129
PsuI	RGATCY	1 cut(s)	78
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	2 cut(s)	24, 78
Sau96I	GGNCC	2 cut(s)	63, 90
SetI	ASST	4 cut(s)	20, 39, 110, 147
SfoI	GGCGCC	1 cut(s)	134
SgeI	CNNG	9 cut(s)	25, 34, 40, 50, 73, 88, 118, 136, 142
SinI	GGWCC	1 cut(s)	90
SsiI	CCGC	1 cut(s)	136
SspDI	GGCGCC	1 cut(s)	132
TaqII	GACCGA	1 cut(s)	107
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	150
TscAI	CASTG	2 cut(s)	80, 134
TspDTI	ATGAA	1 cut(s)	10
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	2 cut(s)	80, 134
VpaK11BI	GGWCC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.