RLG00000027179

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0004030
Physical Location & Seq
Reverse (-)
9319303 .. 9320332
1030 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027179

Sequence Viewer

Length: 438 bp
ATGGACTTTGAGGCGGATTGGTTGATGACATCGGTTAATGGTGGTGGTGGCAGTTTGTGGGTTCCAGATATGTTGGGTCGGGTCTCTGACAGCAGCAGCTGTTTAGGGGTTCTAGGCTACAGCGGTGGTTGCGCTACATCTGGGTGTTGGTCGCAATTCTTTACTTGTGCCGGCGCTGGCAGCAACGATACAGATTGGGACAAGGCTACCCTGTTAAAAAGTTTGGATCCGTTAAGTGGTGATAGTGGCAGTGTTCATGCTGTGGTGGTGGAAGACCCAATTGTGATAGCGGCACCGGCGGCATTGCTGCCGTCGATGGAGATTATGTGCATGCTAGGGTTTGCCATGGTTTGGAATATTGGGCCTCAAGTCACGAAATCTAAAACCATTGTGCCTGTAGTGTTCTCTTGTCAGTTGTCACCATCACAAAAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

15.06

Weight (kDa)

4.23

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 292
AccB7I CCANNNNNTGG 1 cut(s) 351
AciI CCGC 4 cut(s) 14, 123, 290, 299
AclWI GGATC 2 cut(s) 221, 234
AfiI CCNNNNNNNGG 2 cut(s) 236, 351
AluBI AGCT 1 cut(s) 99
AluI AGCT 1 cut(s) 99
Alw26I GTCTC 1 cut(s) 88
AlwI GGATC 2 cut(s) 221, 234
AlwNI CAGNNNCTG 1 cut(s) 99
AoxI GGCC 1 cut(s) 362
ApeKI GCWGC 4 cut(s) 93, 96, 180, 307
AspLEI GCGC 2 cut(s) 134, 176
AspS9I GGNCC 1 cut(s) 362
AsuHPI GGTGA 2 cut(s) 251, 411
BamHI GGATCC 1 cut(s) 226
BanI GGYRCC 1 cut(s) 292
BbsI GAAGAC 1 cut(s) 279
BbvI GCAGC 4 cut(s) 105, 108, 192, 294
BccI CCATC 2 cut(s) 310, 430
BceAI ACGGC 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 3 cut(s) 113, 335, 436
BfmI CTRYAG 2 cut(s) 118, 396
BfoI RGCGCY 1 cut(s) 177
BisI GCNGC 6 cut(s) 94, 97, 181, 291, 300, 308
BlsI GCNGC 6 cut(s) 95, 98, 182, 292, 301, 309
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 3 cut(s) 63, 228, 294
BpiI GAAGAC 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 351
BsaI GGTCTC 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 345
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 351
Bse118I RCCGGY 2 cut(s) 170, 295
Bse3DI GCAATG 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 345
BseLI CCNNNNNNNGG 2 cut(s) 236, 351
BseMI GCAATG 1 cut(s) 302
BseXI GCAGC 4 cut(s) 105, 108, 192, 294
BshFI GGCC 1 cut(s) 364
BshNI GGYRCC 1 cut(s) 292
BsiSI CCGG 2 cut(s) 171, 296
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 2 cut(s) 236, 351
BsmAI GTCTC 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 1 cut(s) 364
Bso31I GGTCTC 1 cut(s) 88
Bsp143I GATC 1 cut(s) 226
Bsp19I CCATGG 1 cut(s) 345
BspACI CCGC 4 cut(s) 14, 123, 290, 299
BspANI GGCC 1 cut(s) 364
BspLI GGNNCC 3 cut(s) 63, 228, 294
BspPI GGATC 2 cut(s) 221, 234
BspT107I GGYRCC 1 cut(s) 292
BspTNI GGTCTC 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 302
BsrFI RCCGGY 2 cut(s) 170, 295
BssAI RCCGGY 2 cut(s) 170, 295
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 345
BstC8I GCNNGC 3 cut(s) 172, 178, 332
BstDSI CCRYGG 1 cut(s) 345
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 2 cut(s) 134, 176
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 4 cut(s) 129, 180, 296, 299
BstNSI RCATGY 1 cut(s) 334
BstSFI CTRYAG 2 cut(s) 118, 396
BstV1I GCAGC 4 cut(s) 105, 108, 192, 294
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BsuRI GGCC 1 cut(s) 364
BtgI CCRYGG 1 cut(s) 345
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 256
Cac8I GCNNGC 3 cut(s) 172, 178, 332
CaiI CAGNNNCTG 1 cut(s) 99
CfoI GCGC 2 cut(s) 134, 176
Cfr10I RCCGGY 2 cut(s) 170, 295
Cfr13I GGNCC 1 cut(s) 362
CviAII CATG 3 cut(s) 257, 331, 346
CviJI RGCY 4 cut(s) 99, 117, 206, 364
CviKI_1 RGCY 4 cut(s) 99, 117, 206, 364
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
EciI GGCGGA 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 345
Eco31I GGTCTC 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 3 cut(s) 260, 334, 349
FaiI YATR 5 cut(s) 71, 258, 326, 332, 347
FaqI GGGAC 1 cut(s) 212
FatI CATG 3 cut(s) 256, 330, 345
Fnu4HI GCNGC 6 cut(s) 94, 97, 181, 291, 300, 308
Fsp4HI GCNGC 6 cut(s) 94, 97, 181, 291, 300, 308
FspBI CTAG 3 cut(s) 113, 335, 436
GlaI GCGC 2 cut(s) 133, 175
GluI GCNGC 6 cut(s) 94, 97, 181, 291, 300, 308
HaeII RGCGCY 1 cut(s) 177
HaeIII GGCC 1 cut(s) 364
HapII CCGG 2 cut(s) 171, 296
HhaI GCGC 2 cut(s) 134, 176
Hin1II CATG 3 cut(s) 260, 334, 349
Hin6I GCGC 2 cut(s) 132, 174
HinP1I GCGC 2 cut(s) 132, 174
HpaII CCGG 2 cut(s) 171, 296
HphI GGTGA 2 cut(s) 251, 411
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 65, 373
Hpy99I CGWCG 1 cut(s) 316
HpyCH4V TGCA 1 cut(s) 330
HpyF10VI GCNNNNNNNGC 4 cut(s) 129, 180, 296, 299
Hsp92II CATG 3 cut(s) 260, 334, 349
HspAI GCGC 2 cut(s) 132, 174
KroI GCCGGC 1 cut(s) 170
KroNI GCCGGC 1 cut(s) 172
Kzo9I GATC 1 cut(s) 226
LpnPI CCDG 7 cut(s) 78, 126, 162, 184, 224, 309, 408
Lsp1109I GCAGC 4 cut(s) 105, 108, 192, 294
MaeI CTAG 3 cut(s) 113, 335, 436
MaeIII GTNAC 2 cut(s) 370, 417
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 1 cut(s) 284
MfeI CAATTG 1 cut(s) 279
MflI RGATCY 1 cut(s) 226
MluCI AATT 2 cut(s) 155, 279
MnlI CCTC 2 cut(s) 4, 375
MroNI GCCGGC 1 cut(s) 170
MseI TTAA 3 cut(s) 36, 215, 233
MslI CAYNNNNRTG 1 cut(s) 142
MspA1I CMGCKG 2 cut(s) 99, 123
MspI CCGG 2 cut(s) 171, 296
MunI CAATTG 1 cut(s) 279
MwoI GCNNNNNNNGC 4 cut(s) 129, 180, 296, 299
NaeI GCCGGC 1 cut(s) 172
NcoI CCATGG 1 cut(s) 345
NdeII GATC 1 cut(s) 226
NgoMIV GCCGGC 1 cut(s) 170
NlaIII CATG 3 cut(s) 260, 334, 349
NlaIV GGNNCC 3 cut(s) 63, 228, 294
NmuCI GTSAC 2 cut(s) 370, 417
NspI RCATGY 1 cut(s) 334
PaeI GCATGC 1 cut(s) 334
PdiI GCCGGC 1 cut(s) 172
PflMI CCANNNNNTGG 1 cut(s) 351
PkrI GCNGC 6 cut(s) 95, 98, 182, 292, 301, 309
PspN4I GGNNCC 3 cut(s) 63, 228, 294
PspPI GGNCC 1 cut(s) 362
PstNI CAGNNNCTG 1 cut(s) 99
PsuI RGATCY 1 cut(s) 226
PvuII CAGCTG 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 142
SaqAI TTAA 3 cut(s) 36, 215, 233
SatI GCNGC 6 cut(s) 94, 97, 181, 291, 300, 308
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 1 cut(s) 362
SetI ASST 1 cut(s) 101
SfcI CTRYAG 2 cut(s) 118, 396
SgrAI CRCCGGYG 1 cut(s) 295
SmiMI CAYNNNNRTG 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
SphI GCATGC 1 cut(s) 334
Sse9I AATT 2 cut(s) 155, 279
SsiI CCGC 4 cut(s) 14, 123, 290, 299
SspI AATATT 1 cut(s) 358
SspMI CTAG 3 cut(s) 113, 335, 436
StyI CCWWGG 1 cut(s) 345
TaqI TCGA 1 cut(s) 314
TasI AATT 2 cut(s) 155, 279
TauI GCSGC 2 cut(s) 293, 302
Tru1I TTAA 3 cut(s) 36, 215, 233
Tru9I TTAA 3 cut(s) 36, 215, 233
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 2 cut(s) 370, 417
TseI GCWGC 4 cut(s) 93, 96, 180, 307
Tsp45I GTSAC 2 cut(s) 370, 417
TspDTI ATGAA 1 cut(s) 245
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 1 cut(s) 256
Van91I CCANNNNNTGG 1 cut(s) 351
XceI RCATGY 1 cut(s) 334
XspI CTAG 3 cut(s) 113, 335, 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.