Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004030

Physical Location & Seq

Genomic Coordinates Forward (+)

64982312 .. 64983321

Gene Structure 1010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035324

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTTGGGTCGTGTCACTGACGGCGAAAGCTATTCAGGGGTTTTGGGCTACAGCGGTGGTTGCGCTGCATCTGGGTATTGGTTGCAATCCTCTGCTCGTGCCGGCACTGGTAGCGATGATGCAAACTGGGACAAGGCTACCCTGTTAAAAGGTTTGGATCTGTTGAGTGGTGACAATGGTAGTGATCATGTTGTGGGGGTGGACAACCAAGTTGTGATAATGGCGCCTGTCGATGGAGATTCTATGCAGAATGACGTTGTCCCTTCGAAGGATAAATGTGTGGGAAGATTGGTTGAGATTCCACCATTGGTATCAGATAAAAGGATTGCAGCTTTATGCTACCGAGCTAAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

12.3

Weight (kDa)

4.72

Isoelectric Point (pI)

17.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25210 AT4G31985
malus_domestica	MD02G1011500.v1.1 MD08G1060200.v1.1 MD15G1036400.v1.1 MD15G1157300.v1.1
prunus_persica	Prupe.1G390600_v2.0.a1 Prupe.7G258200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086361
rosa_laevigata	RLG00000015752 RLG00000024908 RLG00000027179 RLG00000032785 RLG00000035324
rosa_roxburghii	Rroxscaffold_1G00005040 Rroxscaffold_2G00154670 Rroxscaffold_3G00251010
rosa_rugosa	Rorug01G0466800 Rorug06G0368500.1
rosa_samantha	Rh1CG058200 Rh1CG281600 Rh2AG017000 Rh2DG193700 Rh3AG170400 Rh3BG149800 Rh3CG186800 Rh6BG489500 Rh6CG495000 Rh6DG480300 Rh7AG287500 Rh7CG307200
rosa_wichuraiana	Rw2G001440 Rw7G017270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	223
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	233, 268
AluBI	AGCT	3 cut(s)	30, 332, 347
AluI	AGCT	3 cut(s)	30, 332, 347
AlwI	GGATC	1 cut(s)	165
ApeKI	GCWGC	2 cut(s)	65, 329
AspLEI	GCGC	2 cut(s)	65, 226
AsuHPI	GGTGA	1 cut(s)	182
AsuII	TTCGAA	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	223
BauI	CACGAG	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	52, 341
BccI	CCATC	1 cut(s)	227
BceAI	ACGGC	1 cut(s)	37
BclI	TGATCA	1 cut(s)	184
BfaI	CTAG	1 cut(s)	355
BfmI	CTRYAG	1 cut(s)	49
BfoI	RGCGCY	1 cut(s)	227
BisI	GCNGC	2 cut(s)	66, 330
BlsI	GCNGC	2 cut(s)	67, 331
BmiI	GGNNCC	1 cut(s)	225
BmrI	ACTGGG	1 cut(s)	136
BmsI	GCATC	2 cut(s)	77, 109
BmuI	ACTGGG	1 cut(s)	136
Bpu14I	TTCGAA	1 cut(s)	266
BsaHI	GRCGYC	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 268
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	2 cut(s)	112, 131
BseLI	CCNNNNNNNGG	2 cut(s)	233, 268
BseNI	ACTGG	2 cut(s)	112, 131
BseXI	GCAGC	2 cut(s)	52, 341
BshNI	GGYRCC	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	2 cut(s)	143, 245
BslI	CCNNNNNNNGG	2 cut(s)	233, 268
BsmFI	GGGAC	2 cut(s)	143, 245
Bsp119I	TTCGAA	1 cut(s)	266
Bsp143I	GATC	2 cut(s)	157, 184
BspACI	CCGC	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	225
BspPI	GGATC	1 cut(s)	165
BspT104I	TTCGAA	1 cut(s)	266
BspT107I	GGYRCC	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	112, 131
BssAI	RCCGGY	1 cut(s)	101
BssMI	GATC	2 cut(s)	157, 184
BssNI	GRCGYC	1 cut(s)	224
BssSI	CACGAG	1 cut(s)	96
Bst2BI	CACGAG	1 cut(s)	96
BstACI	GRCGYC	1 cut(s)	224
BstBI	TTCGAA	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	103
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	2 cut(s)	65, 226
BstKTI	GATC	2 cut(s)	160, 187
BstMBI	GATC	2 cut(s)	157, 184
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 111
BstSFI	CTRYAG	1 cut(s)	49
BstV1I	GCAGC	2 cut(s)	52, 341
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BtgZI	GCGATG	1 cut(s)	129
BtsIMutI	CAGTG	2 cut(s)	15, 105
Cac8I	GCNNGC	1 cut(s)	103
CfoI	GCGC	2 cut(s)	65, 226
Cfr10I	RCCGGY	1 cut(s)	101
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	5 cut(s)	30, 48, 137, 332, 347
CviKI_1	RGCY	5 cut(s)	30, 48, 137, 332, 347
DinI	GGCGCC	1 cut(s)	225
DpnI	GATC	2 cut(s)	159, 186
DpnII	GATC	2 cut(s)	157, 184
EgeI	GGCGCC	1 cut(s)	225
EheI	GGCGCC	1 cut(s)	225
FaeI	CATG	1 cut(s)	191
FaiI	YATR	3 cut(s)	189, 245, 337
FaqI	GGGAC	2 cut(s)	143, 245
FatI	CATG	1 cut(s)	187
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	2 cut(s)	66, 330
Fsp4HI	GCNGC	2 cut(s)	66, 330
FspBI	CTAG	1 cut(s)	355
GlaI	GCGC	2 cut(s)	64, 225
GluI	GCNGC	2 cut(s)	66, 330
HaeII	RGCGCY	1 cut(s)	227
HapII	CCGG	1 cut(s)	102
HhaI	GCGC	2 cut(s)	65, 226
Hin1I	GRCGYC	1 cut(s)	224
Hin1II	CATG	1 cut(s)	191
Hin6I	GCGC	2 cut(s)	63, 224
HinP1I	GCGC	2 cut(s)	63, 224
HinfI	GANTC	2 cut(s)	239, 298
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	316
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	2 cut(s)	262, 273
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	5 cut(s)	68, 85, 122, 247, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 111
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	224
Hsp92II	CATG	1 cut(s)	191
HspAI	GCGC	2 cut(s)	63, 224
KasI	GGCGCC	1 cut(s)	223
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	157, 184
LpnPI	CCDG	7 cut(s)	21, 57, 93, 112, 115, 155, 240
Lsp1109I	GCAGC	2 cut(s)	52, 341
LweI	GCATC	2 cut(s)	77, 109
MaeI	CTAG	1 cut(s)	355
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	2 cut(s)	13, 170
MalI	GATC	2 cut(s)	159, 186
MboI	GATC	2 cut(s)	157, 184
MboII	GAAGA	1 cut(s)	297
MflI	RGATCY	1 cut(s)	157
Mly113I	GGCGCC	1 cut(s)	224
MnlI	CCTC	1 cut(s)	100
MroNI	GCCGGC	1 cut(s)	101
MseI	TTAA	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	54
MspI	CCGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	2 cut(s)	60, 111
NaeI	GCCGGC	1 cut(s)	103
NarI	GGCGCC	1 cut(s)	224
NdeII	GATC	2 cut(s)	157, 184
NgoMIV	GCCGGC	1 cut(s)	101
NlaIII	CATG	1 cut(s)	191
NlaIV	GGNNCC	1 cut(s)	225
NmuCI	GTSAC	2 cut(s)	13, 170
NspV	TTCGAA	1 cut(s)	266
PdiI	GCCGGC	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	239, 298
PflFI	GACNNNGTC	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	67, 331
PluTI	GGCGCC	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	157
PsyI	GACNNNGTC	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	2 cut(s)	66, 330
Sau3AI	GATC	2 cut(s)	157, 184
SetI	ASST	5 cut(s)	32, 154, 258, 334, 349
SfaNI	GCATC	2 cut(s)	77, 109
SfcI	CTRYAG	1 cut(s)	49
SfoI	GGCGCC	1 cut(s)	225
SfuI	TTCGAA	1 cut(s)	266
SsiI	CCGC	1 cut(s)	54
SspDI	GGCGCC	1 cut(s)	223
SspMI	CTAG	1 cut(s)	355
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	231, 266
TfiI	GAWTC	2 cut(s)	239, 298
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	2 cut(s)	22, 112
TseFI	GTSAC	2 cut(s)	13, 170
TseI	GCWGC	2 cut(s)	65, 329
Tsp45I	GTSAC	2 cut(s)	13, 170
TspRI	CASTG	2 cut(s)	22, 112
Tth111I	GACNNNGTC	1 cut(s)	257
XspI	CTAG	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.