Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004030

Physical Location & Seq

Genomic Coordinates Forward (+)

15469841 .. 15470733

Gene Structure 893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G31985.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGCCGTCGCACAAGTCGTTTATGATTAAGAAGAAGTTGGGAAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATTCGTCTTCGTACCGACAACACCATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCTCGGATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L39

Protein Analysis

51

Amino Acids

6.42

Weight (kDa)

12.0

Isoelectric Point (pI)

64.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L39	PF00832	9 - 49	3.4e-22	Ribosomal L39 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25210 AT4G31985
malus_domestica	MD02G1011500.v1.1 MD08G1060200.v1.1 MD15G1036400.v1.1 MD15G1157300.v1.1
prunus_persica	Prupe.1G390600_v2.0.a1 Prupe.7G258200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086361
rosa_laevigata	RLG00000015752 RLG00000024908 RLG00000027179 RLG00000032785 RLG00000035324
rosa_roxburghii	Rroxscaffold_1G00005040 Rroxscaffold_2G00154670 Rroxscaffold_3G00251010
rosa_rugosa	Rorug01G0466800 Rorug06G0368500.1
rosa_samantha	Rh1CG058200 Rh1CG281600 Rh2AG017000 Rh2DG193700 Rh3AG170400 Rh3BG149800 Rh3CG186800 Rh6BG489500 Rh6CG495000 Rh6DG480300 Rh7AG287500 Rh7CG307200
rosa_wichuraiana	Rw2G001440 Rw7G017270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	91, 110
AfiI	CCNNNNNNNGG	1 cut(s)	123
AjuI	GAANNNNNNNTTGG	1 cut(s)	134
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	46
AlwNI	CAGNNNCTG	1 cut(s)	129
AoxI	GGCC	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	77
BccI	CCATC	1 cut(s)	110
BcoDI	GTCTC	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse1I	ACTGG	2 cut(s)	80, 134
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseNI	ACTGG	2 cut(s)	80, 134
BshFI	GGCC	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	80, 134
BstC8I	GCNNGC	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	123
BstMAI	GTCTC	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	64
BtsIMutI	CAGTG	2 cut(s)	73, 127
Cac8I	GCNNGC	1 cut(s)	125
CaiI	CAGNNNCTG	1 cut(s)	129
CfoI	GCGC	1 cut(s)	123
Csp6I	GTAC	2 cut(s)	90, 109
CviJI	RGCY	2 cut(s)	64, 145
CviKI_1	RGCY	2 cut(s)	64, 145
CviQI	GTAC	2 cut(s)	90, 109
Eco147I	AGGCCT	1 cut(s)	64
FaiI	YATR	1 cut(s)	23
GlaI	GCGC	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	123
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HinfI	GANTC	2 cut(s)	79, 150
Hpy188I	TCNGA	1 cut(s)	149
Hpy99I	CGWCG	1 cut(s)	10
HspAI	GCGC	1 cut(s)	121
LpnPI	CCDG	5 cut(s)	46, 61, 91, 109, 115
MboII	GAAGA	3 cut(s)	43, 58, 77
MnlI	CCTC	1 cut(s)	81
MseI	TTAA	1 cut(s)	27
PceI	AGGCCT	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	79, 150
PstNI	CAGNNNCTG	1 cut(s)	129
RsaI	GTAC	2 cut(s)	91, 110
RsaNI	GTAC	2 cut(s)	90, 109
SaqAI	TTAA	1 cut(s)	27
SetI	ASST	2 cut(s)	110, 147
SgeI	CNNG	7 cut(s)	25, 73, 88, 118, 130, 136, 142
SseBI	AGGCCT	1 cut(s)	64
StuI	AGGCCT	1 cut(s)	64
TfiI	GAWTC	2 cut(s)	79, 150
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	2 cut(s)	80, 134
TspRI	CASTG	2 cut(s)	80, 134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.