Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0004030

Physical Location & Seq

Genomic Coordinates Reverse (-)

12711406 .. 12711693

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG149800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGACTTTGAGGCAGATTGGTTGATGACATCGATTGATGGTGGTGGCGGCGGCTTGTGGGTTCTAGATATGCTGGGTCGTGTCTCTGACGGCGGTAGCTATTTAGGGGTTTTAGGCTACATCGGTGGTTGTGCTGCATCTGGGTATTGGTCGCAATTCTCTACTCTTGCTGGCGCTGGCAGCAACGATGCAGATTGGGACAAGGCTACCCTGTTAAAAGGGTTGGATCCGCTAATTGGTGATGGTGGCAGTGATCATGCTGTGGTGGTGGACGACCAAGTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

95

Amino Acids

9.72

Weight (kDa)

4.05

Isoelectric Point (pI)

11.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25210 AT4G31985
malus_domestica	MD02G1011500.v1.1 MD08G1060200.v1.1 MD15G1036400.v1.1 MD15G1157300.v1.1
prunus_persica	Prupe.1G390600_v2.0.a1 Prupe.7G258200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086361
rosa_laevigata	RLG00000015752 RLG00000024908 RLG00000027179 RLG00000032785 RLG00000035324
rosa_roxburghii	Rroxscaffold_1G00005040 Rroxscaffold_2G00154670 Rroxscaffold_3G00251010
rosa_rugosa	Rorug01G0466800 Rorug06G0368500.1
rosa_samantha	Rh1CG058200 Rh1CG281600 Rh2AG017000 Rh2DG193700 Rh3AG170400 Rh3BG149800 Rh3CG186800 Rh6BG489500 Rh6CG495000 Rh6DG480300 Rh7AG287500 Rh7CG307200
rosa_wichuraiana	Rw2G001440 Rw7G017270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	48, 51, 93, 230
AclWI	GGATC	2 cut(s)	221, 234
AfiI	CCNNNNNNNGG	1 cut(s)	236
AluBI	AGCT	1 cut(s)	99
AluI	AGCT	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	2 cut(s)	221, 234
ApeKI	GCWGC	2 cut(s)	134, 180
AspLEI	GCGC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	251
BamHI	GGATCC	1 cut(s)	226
BbvI	GCAGC	2 cut(s)	121, 192
BccI	CCATC	2 cut(s)	32, 236
BceAI	ACGGC	1 cut(s)	106
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	1 cut(s)	65
BfoI	RGCGCY	1 cut(s)	177
BisI	GCNGC	4 cut(s)	49, 52, 135, 181
BlsI	GCNGC	4 cut(s)	50, 53, 136, 182
BmiI	GGNNCC	1 cut(s)	228
BmsI	GCATC	2 cut(s)	146, 178
Bsa29I	ATCGAT	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
BseCI	ATCGAT	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseXI	GCAGC	2 cut(s)	121, 192
BseYI	CCCAGC	1 cut(s)	73
BshVI	ATCGAT	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	226, 253
BspACI	CCGC	4 cut(s)	48, 51, 93, 230
BspDI	ATCGAT	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	228
BspPI	GGATC	2 cut(s)	221, 234
BssMI	GATC	2 cut(s)	226, 253
BstC8I	GCNNGC	2 cut(s)	172, 178
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	2 cut(s)	229, 256
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	2 cut(s)	226, 253
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	121, 192
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
Bsu15I	ATCGAT	1 cut(s)	32
BsuTUI	ATCGAT	1 cut(s)	32
BtsI	GCAGTG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	256
Cac8I	GCNNGC	2 cut(s)	172, 178
CfoI	GCGC	1 cut(s)	176
ClaI	ATCGAT	1 cut(s)	32
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	4 cut(s)	54, 99, 117, 206
CviKI_1	RGCY	4 cut(s)	54, 99, 117, 206
DpnI	GATC	2 cut(s)	228, 255
DpnII	GATC	2 cut(s)	226, 253
FaeI	CATG	1 cut(s)	260
FaiI	YATR	2 cut(s)	71, 258
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	1 cut(s)	256
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	4 cut(s)	49, 52, 135, 181
Fsp4HI	GCNGC	4 cut(s)	49, 52, 135, 181
FspBI	CTAG	1 cut(s)	65
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	4 cut(s)	49, 52, 135, 181
GsaI	CCCAGC	1 cut(s)	77
HaeII	RGCGCY	1 cut(s)	177
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	1 cut(s)	260
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	1 cut(s)	271
HpyCH4V	TGCA	2 cut(s)	137, 191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	260
HspAI	GCGC	1 cut(s)	174
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	226, 253
LpnPI	CCDG	5 cut(s)	59, 126, 156, 162, 224
Lsp1109I	GCAGC	2 cut(s)	121, 192
LweI	GCATC	2 cut(s)	146, 178
MaeI	CTAG	1 cut(s)	65
MalI	GATC	2 cut(s)	228, 255
MboI	GATC	2 cut(s)	226, 253
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	2 cut(s)	155, 234
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	1 cut(s)	4
MseI	TTAA	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	180
NdeII	GATC	2 cut(s)	226, 253
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	1 cut(s)	228
PkrI	GCNGC	4 cut(s)	50, 53, 136, 182
PspFI	CCCAGC	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	228
PsuI	RGATCY	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	4 cut(s)	49, 52, 135, 181
Sau3AI	GATC	2 cut(s)	226, 253
SetI	ASST	1 cut(s)	101
SfaNI	GCATC	2 cut(s)	146, 178
Sse9I	AATT	2 cut(s)	155, 234
SsiI	CCGC	4 cut(s)	48, 51, 93, 230
SspMI	CTAG	1 cut(s)	65
TaqI	TCGA	1 cut(s)	32
TasI	AATT	2 cut(s)	155, 234
TauI	GCSGC	2 cut(s)	51, 54
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	2 cut(s)	134, 180
TspRI	CASTG	1 cut(s)	256
XbaI	TCTAGA	1 cut(s)	64
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.