Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004030

Physical Location & Seq

Genomic Coordinates Forward (+)

6852729 .. 6855261

Gene Structure 2533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00005040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAAGGCCCGGGAAGCCTGCGTCACGAGAGAGGTACCAAATCTTCTTTTTTGTGGCGGGGTTCCATGTTTTGCGGCCATAGGAGTTTTGGGAGTGGAAGCGCCTTTCGAATCTGGTGGTGAAAAGGAGTGGCACGGTGGATGTGGCGACGCGGCGTGGCTGCAGATTAAGCGGGTTTCCGATCCGATCCGAGTTGCTGGAGGCCTAGCTTGTGGAACTCCTCATATGATCAGTGCTACGATTGAAGGCCTTGCTTGTTGGCTTATGAGTTCTCTGACCTTTCTCGGTACAGGTAAGTTTGATCCGAGTTTGGATCTGGCTCGAGCTGGTAGTGGTATACTACCTTTGTGGGTGAGAGTTGCGGCCTTGCCTGTCTTATTGGATGAGCTCGTTTCTTTAAAGCCACAGAGGAGGGAAATGGTTCTTGATTTGGGTGCGATTGTTGGTGGTGCGAATGGCAGCGGCAGCGGTTTGGCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

16.56

Weight (kDa)

5.37

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25210 AT4G31985
malus_domestica	MD02G1011500.v1.1 MD08G1060200.v1.1 MD15G1036400.v1.1 MD15G1157300.v1.1
prunus_persica	Prupe.1G390600_v2.0.a1 Prupe.7G258200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086361
rosa_laevigata	RLG00000015752 RLG00000024908 RLG00000027179 RLG00000032785 RLG00000035324
rosa_roxburghii	Rroxscaffold_1G00005040 Rroxscaffold_2G00154670 Rroxscaffold_3G00251010
rosa_rugosa	Rorug01G0466800 Rorug06G0368500.1
rosa_samantha	Rh1CG058200 Rh1CG281600 Rh2AG017000 Rh2DG193700 Rh3AG170400 Rh3BG149800 Rh3CG186800 Rh6BG489500 Rh6CG495000 Rh6DG480300 Rh7AG287500 Rh7CG307200
rosa_wichuraiana	Rw2G001440 Rw7G017270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	34
AccB1I	GGYRCC	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	337
AccII	CGCG	1 cut(s)	152
AciI	CCGC	7 cut(s)	57, 74, 152, 172, 362, 462, 468
AclWI	GGATC	4 cut(s)	176, 181, 296, 321
AcoI	YGGCCR	1 cut(s)	75
AfaI	GTAC	2 cut(s)	36, 289
AgsI	TTSAA	1 cut(s)	245
AluBI	AGCT	3 cut(s)	209, 326, 388
AluI	AGCT	3 cut(s)	209, 326, 388
Alw21I	GWGCWC	1 cut(s)	390
AlwI	GGATC	4 cut(s)	176, 181, 296, 321
Ama87I	CYCGRG	2 cut(s)	9, 321
AoxI	GGCC	5 cut(s)	6, 75, 202, 247, 363
ApeKI	GCWGC	3 cut(s)	160, 459, 465
Asp700I	GAANNNNTTC	1 cut(s)	420
Asp718I	GGTACC	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	7
AsuC2I	CCSGG	2 cut(s)	10, 11
AsuHPI	GGTGA	2 cut(s)	131, 364
AsuII	TTCGAA	1 cut(s)	108
AvaI	CYCGRG	2 cut(s)	9, 321
BanI	GGYRCC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	390
BarI	GAAGNNNNNNTAC	2 cut(s)	27, 59
BauI	CACGAG	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	3 cut(s)	147, 471, 477
BclI	TGATCA	1 cut(s)	228
BcnI	CCSGG	2 cut(s)	10, 11
BfaI	CTAG	2 cut(s)	206, 481
BfmI	CTRYAG	1 cut(s)	161
BfoI	RGCGCY	1 cut(s)	104
BisI	GCNGC	7 cut(s)	75, 153, 161, 363, 460, 463, 466
BlsI	GCNGC	7 cut(s)	76, 154, 162, 364, 461, 464, 467
Bme1390I	CCNGG	2 cut(s)	10, 11
BmeT110I	CYCGRG	2 cut(s)	9, 321
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	2 cut(s)	36, 63
BmrFI	CCNGG	2 cut(s)	10, 11
BpmI	CTGGAG	1 cut(s)	219
Bpu14I	TTCGAA	1 cut(s)	108
BpuMI	CCSGG	2 cut(s)	10, 11
BsaJI	CCNNGG	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	2 cut(s)	146, 388
BseRI	GAGGAG	2 cut(s)	210, 424
BseXI	GCAGC	3 cut(s)	147, 471, 477
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	5 cut(s)	8, 77, 204, 249, 365
BshNI	GGYRCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	390
BsiHKCI	CYCGRG	2 cut(s)	9, 321
BsiSI	CCGG	1 cut(s)	10
BsnI	GGCC	5 cut(s)	8, 77, 204, 249, 365
BsoBI	CYCGRG	2 cut(s)	9, 321
Bsp119I	TTCGAA	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	5 cut(s)	181, 186, 228, 301, 313
BspACI	CCGC	7 cut(s)	57, 74, 152, 172, 362, 462, 468
BspANI	GGCC	5 cut(s)	8, 77, 204, 249, 365
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	2 cut(s)	36, 63
BspMAI	CTGCAG	1 cut(s)	165
BspPI	GGATC	4 cut(s)	176, 181, 296, 321
BspT104I	TTCGAA	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	5 cut(s)	181, 186, 228, 301, 313
BssNAI	GTATAC	1 cut(s)	338
BssSI	CACGAG	1 cut(s)	25
Bst1107I	GTATAC	1 cut(s)	338
Bst2BI	CACGAG	1 cut(s)	25
Bst4CI	ACNGT	1 cut(s)	137
BstBI	TTCGAA	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	19
BstF5I	GGATG	2 cut(s)	146, 388
BstFNI	CGCG	1 cut(s)	152
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	5 cut(s)	184, 189, 231, 304, 316
BstMBI	GATC	5 cut(s)	181, 186, 228, 301, 313
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 169, 465
BstSCI	CCNGG	2 cut(s)	8, 9
BstSFI	CTRYAG	1 cut(s)	161
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	3 cut(s)	147, 471, 477
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BstZ17I	GTATAC	1 cut(s)	338
BsuRI	GGCC	5 cut(s)	8, 77, 204, 249, 365
BtsCI	GGATG	2 cut(s)	146, 388
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	19
CfoI	GCGC	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	7
Cfr9I	CCCGGG	1 cut(s)	9
CseI	GACGC	2 cut(s)	10, 158
Csp6I	GTAC	2 cut(s)	35, 288
CviAII	CATG	1 cut(s)	66
CviQI	GTAC	2 cut(s)	35, 288
DpnI	GATC	5 cut(s)	183, 188, 230, 303, 315
DpnII	GATC	5 cut(s)	181, 186, 228, 301, 313
DraI	TTTAAA	1 cut(s)	399
EaeI	YGGCCR	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	388
Eco147I	AGGCCT	2 cut(s)	204, 249
Eco24I	GRGCYC	1 cut(s)	390
Eco53kI	GAGCTC	1 cut(s)	388
Eco88I	CYCGRG	2 cut(s)	9, 321
EcoICRI	GAGCTC	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	390
FaeI	CATG	1 cut(s)	69
FaiI	YATR	6 cut(s)	67, 80, 225, 227, 266, 338
FatI	CATG	1 cut(s)	65
FauI	CCCGC	2 cut(s)	50, 165
FauNDI	CATATG	1 cut(s)	225
FbaI	TGATCA	1 cut(s)	228
FblI	GTMKAC	1 cut(s)	337
Fnu4HI	GCNGC	7 cut(s)	75, 153, 161, 363, 460, 463, 466
FokI	GGATG	2 cut(s)	153, 395
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	7 cut(s)	75, 153, 161, 363, 460, 463, 466
FspBI	CTAG	2 cut(s)	206, 481
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	7 cut(s)	75, 153, 161, 363, 460, 463, 466
GsuI	CTGGAG	1 cut(s)	219
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	5 cut(s)	8, 77, 204, 249, 365
HapII	CCGG	1 cut(s)	10
HgaI	GACGC	2 cut(s)	10, 158
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	69
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HinfI	GANTC	1 cut(s)	110
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	2 cut(s)	131, 364
Hpy166II	GTNNAC	1 cut(s)	338
Hpy188I	TCNGA	5 cut(s)	181, 186, 191, 276, 306
Hpy188III	TCNNGA	2 cut(s)	25, 425
Hpy8I	GTNNAC	1 cut(s)	338
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	239
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4V	TGCA	1 cut(s)	163
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 169, 465
Hsp92II	CATG	1 cut(s)	69
HspAI	GCGC	1 cut(s)	101
KpnI	GGTACC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	5 cut(s)	181, 186, 228, 301, 313
LpnPI	CCDG	8 cut(s)	23, 31, 99, 183, 276, 302, 312, 384
Lsp1109I	GCAGC	3 cut(s)	147, 471, 477
MaeI	CTAG	2 cut(s)	206, 481
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	5 cut(s)	183, 188, 230, 303, 315
MboI	GATC	5 cut(s)	181, 186, 228, 301, 313
MboII	GAAGA	1 cut(s)	35
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	390
MnlI	CCTC	5 cut(s)	25, 194, 231, 402, 405
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	2 cut(s)	168, 398
MspA1I	CMGCKG	2 cut(s)	462, 468
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	2 cut(s)	10, 11
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	3 cut(s)	14, 169, 465
NciI	CCSGG	2 cut(s)	10, 11
NdeI	CATATG	1 cut(s)	225
NdeII	GATC	5 cut(s)	181, 186, 228, 301, 313
NlaIII	CATG	1 cut(s)	69
NlaIV	GGNNCC	2 cut(s)	36, 63
NmuCI	GTSAC	1 cut(s)	22
NspV	TTCGAA	1 cut(s)	108
PaeR7I	CTCGAG	1 cut(s)	321
PceI	AGGCCT	2 cut(s)	204, 249
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	110
PkrI	GCNGC	7 cut(s)	76, 154, 162, 364, 461, 464, 467
Psp124BI	GAGCTC	1 cut(s)	390
PspN4I	GGNNCC	2 cut(s)	36, 63
PspPI	GGNCC	1 cut(s)	7
PspXI	VCTCGAGB	1 cut(s)	321
PstI	CTGCAG	1 cut(s)	165
PsuI	RGATCY	1 cut(s)	313
RsaI	GTAC	2 cut(s)	36, 289
RsaNI	GTAC	2 cut(s)	35, 288
SacI	GAGCTC	1 cut(s)	390
SaqAI	TTAA	2 cut(s)	168, 398
SatI	GCNGC	7 cut(s)	75, 153, 161, 363, 460, 463, 466
Sau3AI	GATC	5 cut(s)	181, 186, 228, 301, 313
Sau96I	GGNCC	1 cut(s)	7
ScrFI	CCNGG	2 cut(s)	10, 11
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	7 cut(s)	36, 211, 281, 295, 328, 346, 390
SfcI	CTRYAG	1 cut(s)	161
Sfr274I	CTCGAG	1 cut(s)	321
SfuI	TTCGAA	1 cut(s)	108
SlaI	CTCGAG	1 cut(s)	321
SmaI	CCCGGG	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
SseBI	AGGCCT	2 cut(s)	204, 249
SsiI	CCGC	7 cut(s)	57, 74, 152, 172, 362, 462, 468
SspMI	CTAG	2 cut(s)	206, 481
SstI	GAGCTC	1 cut(s)	390
StuI	AGGCCT	2 cut(s)	204, 249
StyD4I	CCNGG	2 cut(s)	8, 9
TaaI	ACNGT	1 cut(s)	137
TaqI	TCGA	2 cut(s)	108, 322
TauI	GCSGC	4 cut(s)	77, 155, 365, 465
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	2 cut(s)	168, 398
Tru9I	TTAA	2 cut(s)	168, 398
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	3 cut(s)	160, 459, 465
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	9
TspRI	CASTG	1 cut(s)	238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XhoI	CTCGAG	1 cut(s)	321
XmaI	CCCGGG	1 cut(s)	9
XmiI	GTMKAC	1 cut(s)	337
XmnI	GAANNNNTTC	1 cut(s)	420
XspI	CTAG	2 cut(s)	206, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.