Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004030

Physical Location & Seq

Genomic Coordinates Reverse (-)

19022437 .. 19023642

Gene Structure 1206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032785

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAGCGCCGATCCGATCAAACACCTGATCCCTACCTGCTTCACCTCCATCTTCGAACTCGACCTCTCCTTTTTCTCACCGTGGGATCACGCGCTGCTCTCGCCCTCCACCTCCTCCACCGACTTTGCCTTCATGGTGAATCAGCAGATCTGTTCCTTGAAGCTCTTTGTAGATTTAGGCCTACTCTTACTTCCTCTCTTCATTGTGGTGGATGGTGTAGCCATTTGCCCGATCTTGATGGAGGTTAATGGCGATATTCATCGTCATGATGGATTTTGGGTTGGGATTGGATTATTGTTTGGGGATGGAGATCGATATGGGGCAGACTCTGTTCCTGGTTTCTTGAGTTGGGATGTTGGCGACCATGAGTTGCTCTTGTTCATGGACTTTGAGGCGGATTGGTTGACGACATCGGTTGATGGTGGTGGTGGCGGCTTGTGGGTTCTAGATATGCTGGGTTGTGTCTCTGACGGCGGTAGCTATTTATGGGTTCTAGGCTACAGCGGTGGTTGCGCTGCATCTGGGTATTGGTCGCAATTCTCTACTCGTGCCGGCGCTGGCAGCAACGATGCAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006810 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009653 GO:0009914 GO:0009926 GO:0009934 GO:0009987 GO:0010016 GO:0010029 GO:0010035 GO:0010187 GO:0010817 GO:0016567 GO:0019005 GO:0019538 GO:0022603 GO:0031461 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042221 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048367 GO:0048509 GO:0048518 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0060918 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080134 GO:1900140 GO:1901564 GO:1901700 GO:1902494 GO:1902584 GO:1990234 GO:2000026 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

193

Amino Acids

20.66

Weight (kDa)

4.05

Isoelectric Point (pI)

19.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25210 AT4G31985
malus_domestica	MD02G1011500.v1.1 MD08G1060200.v1.1 MD15G1036400.v1.1 MD15G1157300.v1.1
prunus_persica	Prupe.1G390600_v2.0.a1 Prupe.7G258200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086361
rosa_laevigata	RLG00000015752 RLG00000024908 RLG00000027179 RLG00000032785 RLG00000035324
rosa_roxburghii	Rroxscaffold_1G00005040 Rroxscaffold_2G00154670 Rroxscaffold_3G00251010
rosa_rugosa	Rorug01G0466800 Rorug06G0368500.1
rosa_samantha	Rh1CG058200 Rh1CG281600 Rh2AG017000 Rh2DG193700 Rh3AG170400 Rh3BG149800 Rh3CG186800 Rh6BG489500 Rh6CG495000 Rh6DG480300 Rh7AG287500 Rh7CG307200
rosa_wichuraiana	Rw2G001440 Rw7G017270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	44
AccII	CGCG	1 cut(s)	92
AciI	CCGC	4 cut(s)	395, 432, 474, 504
AclWI	GGATC	3 cut(s)	5, 22, 93
AgsI	TTSAA	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	2 cut(s)	163, 480
AluI	AGCT	2 cut(s)	163, 480
Alw26I	GTCTC	1 cut(s)	469
AlwI	GGATC	3 cut(s)	5, 22, 93
AlwNI	CAGNNNCTG	1 cut(s)	329
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	3 cut(s)	94, 515, 561
AspLEI	GCGC	4 cut(s)	8, 94, 515, 557
AsuHPI	GGTGA	3 cut(s)	34, 69, 148
AsuII	TTCGAA	1 cut(s)	54
BauI	CACGAG	1 cut(s)	546
BbvI	GCAGC	3 cut(s)	81, 502, 573
BccI	CCATC	6 cut(s)	56, 206, 232, 263, 299, 413
BceAI	ACGGC	1 cut(s)	487
BciT130I	CCWGG	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	469
BfaI	CTAG	2 cut(s)	446, 494
BfmI	CTRYAG	1 cut(s)	499
BfoI	RGCGCY	2 cut(s)	9, 558
BfuAI	ACCTGC	1 cut(s)	44
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	4 cut(s)	95, 433, 516, 562
BlsI	GCNGC	4 cut(s)	96, 434, 517, 563
Bme1390I	CCNGG	1 cut(s)	336
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	2 cut(s)	527, 559
Bpu14I	TTCGAA	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	364
Bsa29I	ATCGAT	1 cut(s)	313
BsaBI	GATNNNNATC	2 cut(s)	258, 309
BsaJI	CCNNGG	1 cut(s)	80
Bse118I	RCCGGY	1 cut(s)	551
Bse8I	GATNNNNATC	2 cut(s)	258, 309
BseBI	CCWGG	1 cut(s)	336
BseCI	ATCGAT	1 cut(s)	313
BseDI	CCNNGG	1 cut(s)	80
BseGI	GGATG	3 cut(s)	217, 310, 358
BseJI	GATNNNNATC	2 cut(s)	258, 309
BseRI	GAGGAG	1 cut(s)	103
BseXI	GCAGC	3 cut(s)	81, 502, 573
BseYI	CCCAGC	1 cut(s)	454
Bsh1236I	CGCG	1 cut(s)	92
BshFI	GGCC	1 cut(s)	180
BshVI	ATCGAT	1 cut(s)	313
BsiSI	CCGG	1 cut(s)	552
BsmAI	GTCTC	1 cut(s)	469
BsnI	GGCC	1 cut(s)	180
Bsp119I	TTCGAA	1 cut(s)	54
Bsp143I	GATC	7 cut(s)	10, 15, 27, 85, 147, 231, 310
BspACI	CCGC	4 cut(s)	395, 432, 474, 504
BspANI	GGCC	1 cut(s)	180
BspDI	ATCGAT	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	92
BspHI	TCATGA	1 cut(s)	265
BspMI	ACCTGC	1 cut(s)	44
BspPI	GGATC	3 cut(s)	5, 22, 93
BspT104I	TTCGAA	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	551
BssAI	RCCGGY	1 cut(s)	551
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	7 cut(s)	10, 15, 27, 85, 147, 231, 310
BssSI	CACGAG	1 cut(s)	546
Bst2BI	CACGAG	1 cut(s)	546
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	1 cut(s)	81
Bst6I	CTCTTC	1 cut(s)	203
BstBI	TTCGAA	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	553, 559
BstDSI	CCRYGG	1 cut(s)	80
BstF5I	GGATG	3 cut(s)	217, 310, 358
BstFNI	CGCG	1 cut(s)	92
BstH2I	RGCGCY	2 cut(s)	9, 558
BstHHI	GCGC	4 cut(s)	8, 94, 515, 557
BstKTI	GATC	7 cut(s)	13, 18, 30, 88, 150, 234, 313
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	7 cut(s)	10, 15, 27, 85, 147, 231, 310
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 510, 561
BstNI	CCWGG	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	334
BstSFI	CTRYAG	1 cut(s)	499
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	3 cut(s)	81, 502, 573
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
Bsu15I	ATCGAT	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	180
BsuTUI	ATCGAT	1 cut(s)	313
BtgI	CCRYGG	1 cut(s)	80
BtsCI	GGATG	3 cut(s)	217, 310, 358
BveI	ACCTGC	1 cut(s)	44
Cac8I	GCNNGC	2 cut(s)	553, 559
CaiI	CAGNNNCTG	1 cut(s)	329
CciI	TCATGA	1 cut(s)	265
CfoI	GCGC	4 cut(s)	8, 94, 515, 557
Cfr10I	RCCGGY	1 cut(s)	551
ClaI	ATCGAT	1 cut(s)	313
CspCI	CAANNNNNGTGG	2 cut(s)	106, 141
CviAII	CATG	4 cut(s)	133, 266, 365, 382
CviJI	RGCY	6 cut(s)	163, 180, 221, 435, 480, 498
CviKI_1	RGCY	6 cut(s)	163, 180, 221, 435, 480, 498
DpnI	GATC	7 cut(s)	12, 17, 29, 87, 149, 233, 312
DpnII	GATC	7 cut(s)	10, 15, 27, 85, 147, 231, 310
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
EciI	GGCGGA	1 cut(s)	410
Eco147I	AGGCCT	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	334
FaeI	CATG	4 cut(s)	136, 269, 368, 385
FaiI	YATR	7 cut(s)	134, 267, 318, 366, 383, 452, 487
FatI	CATG	4 cut(s)	132, 265, 364, 381
Fnu4HI	GCNGC	4 cut(s)	95, 433, 516, 562
FokI	GGATG	3 cut(s)	224, 317, 365
Fsp4HI	GCNGC	4 cut(s)	95, 433, 516, 562
FspBI	CTAG	2 cut(s)	446, 494
GlaI	GCGC	4 cut(s)	7, 93, 514, 556
GluI	GCNGC	4 cut(s)	95, 433, 516, 562
GsaI	CCCAGC	1 cut(s)	458
HaeII	RGCGCY	2 cut(s)	9, 558
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	1 cut(s)	552
HhaI	GCGC	4 cut(s)	8, 94, 515, 557
Hin1II	CATG	4 cut(s)	136, 269, 368, 385
Hin6I	GCGC	4 cut(s)	6, 92, 513, 555
HinP1I	GCGC	4 cut(s)	6, 92, 513, 555
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HinfI	GANTC	2 cut(s)	139, 326
HpaII	CCGG	1 cut(s)	552
HphI	GGTGA	3 cut(s)	34, 69, 148
Hpy166II	GTNNAC	1 cut(s)	405
Hpy188I	TCNGA	2 cut(s)	15, 469
Hpy188III	TCNNGA	4 cut(s)	235, 266, 343, 446
Hpy8I	GTNNAC	1 cut(s)	405
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4V	TGCA	2 cut(s)	518, 572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 510, 561
Hsp92II	CATG	4 cut(s)	136, 269, 368, 385
HspAI	GCGC	4 cut(s)	6, 92, 513, 555
KroI	GCCGGC	1 cut(s)	551
KroNI	GCCGGC	1 cut(s)	553
Kzo9I	GATC	7 cut(s)	10, 15, 27, 85, 147, 231, 310
LpnPI	CCDG	8 cut(s)	38, 49, 321, 348, 440, 507, 543, 565
Lsp1109I	GCAGC	3 cut(s)	81, 502, 573
LweI	GCATC	2 cut(s)	527, 559
MaeI	CTAG	2 cut(s)	446, 494
MalI	GATC	7 cut(s)	12, 17, 29, 87, 149, 233, 312
MboI	GATC	7 cut(s)	10, 15, 27, 85, 147, 231, 310
MboII	GAAGA	2 cut(s)	43, 190
MflI	RGATCY	1 cut(s)	147
MluCI	AATT	1 cut(s)	536
MlyI	GAGTC	1 cut(s)	320
MnlI	CCTC	8 cut(s)	55, 74, 115, 121, 124, 204, 235, 385
MroNI	GCCGGC	1 cut(s)	551
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	2 cut(s)	206, 264
MspA1I	CMGCKG	1 cut(s)	504
MspI	CCGG	1 cut(s)	552
MspR9I	CCNGG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	336
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	3 cut(s)	100, 510, 561
NaeI	GCCGGC	1 cut(s)	553
NdeII	GATC	7 cut(s)	10, 15, 27, 85, 147, 231, 310
NgoMIV	GCCGGC	1 cut(s)	551
NlaIII	CATG	4 cut(s)	136, 269, 368, 385
NspV	TTCGAA	1 cut(s)	54
PagI	TCATGA	1 cut(s)	265
PceI	AGGCCT	1 cut(s)	180
PdiI	GCCGGC	1 cut(s)	553
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	4 cut(s)	96, 434, 517, 563
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	334
PspFI	CCCAGC	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	334
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	147
RseI	CAYNNNNRTG	2 cut(s)	206, 264
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	4 cut(s)	95, 433, 516, 562
Sau3AI	GATC	7 cut(s)	10, 15, 27, 85, 147, 231, 310
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	1 cut(s)	336
SetI	ASST	8 cut(s)	27, 38, 47, 66, 113, 165, 246, 482
SfaNI	GCATC	2 cut(s)	527, 559
SfcI	CTRYAG	1 cut(s)	499
SfuI	TTCGAA	1 cut(s)	54
SmiMI	CAYNNNNRTG	2 cut(s)	206, 264
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
Sse9I	AATT	1 cut(s)	536
SseBI	AGGCCT	1 cut(s)	180
SsiI	CCGC	4 cut(s)	395, 432, 474, 504
SspMI	CTAG	2 cut(s)	446, 494
StuI	AGGCCT	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	334
TaaI	ACNGT	1 cut(s)	81
TaqI	TCGA	3 cut(s)	54, 60, 313
TasI	AATT	1 cut(s)	536
TauI	GCSGC	1 cut(s)	435
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseI	GCWGC	3 cut(s)	94, 515, 561
TspDTI	ATGAA	4 cut(s)	121, 190, 248, 370
XbaI	TCTAGA	1 cut(s)	445
XspI	CTAG	2 cut(s)	446, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.