Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004030

Physical Location & Seq

Genomic Coordinates Reverse (-)

30913702 .. 30914401

Gene Structure 700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG287500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAAAACTCTCTCCCGACCTAGCTCTCTCCCTGCTAGGGTTTGTGACCGCCGACCTTCAAAGCTGATGGCTCTACACCTTCTCCATGGCTTGTCCTTGGAGATCTTTGTAGGTTTAGGCCTACTCTTACTTCTTCTCCTCATTGTGGTGGATGGTGCAGCCGTTTGCCCTATCTTGACGGAGGTTAATGGCGATATTCATCGTCATGATGGATTTCGAGCTGGGATTGGATTATTGTTTGGGGATGGAGATCGATATGGGGCAGACTTTGTTCCTGGTTTATTGAGTTGGGATGTTGGTGACCATGAGTTGCTCTTGGTTTTTCCGGTTAGATTCATGGACTTTGAGGCTAATTGGTTGGCGACATCGGTTGATGGTGATGGCGGCGGCTTATGGGTTCCAGATATGTTGGGTCGTGTCTCTGAGACGCAACGATGCAGATTGGGACAAGGCTACCTTGTTAAAAGAAGTGGTGATGATGGCAGTGATCATGCTGTGGTAGTGGACGACCAAGTTGTGACAGCGGCACTGGCGGCATTGCTGCCGTCGATGGAGATTCTATGCATGCTAAGGTTTGCCGTGGTTTGGAATATTGGGCCTCAAGTGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

21.93

Weight (kDa)

5.08

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25210 AT4G31985
malus_domestica	MD02G1011500.v1.1 MD08G1060200.v1.1 MD15G1036400.v1.1 MD15G1157300.v1.1
prunus_persica	Prupe.1G390600_v2.0.a1 Prupe.7G258200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086361
rosa_laevigata	RLG00000015752 RLG00000024908 RLG00000027179 RLG00000032785 RLG00000035324
rosa_roxburghii	Rroxscaffold_1G00005040 Rroxscaffold_2G00154670 Rroxscaffold_3G00251010
rosa_rugosa	Rorug01G0466800 Rorug06G0368500.1
rosa_samantha	Rh1CG058200 Rh1CG281600 Rh2AG017000 Rh2DG193700 Rh3AG170400 Rh3BG149800 Rh3CG186800 Rh6BG489500 Rh6CG495000 Rh6DG480300 Rh7AG287500 Rh7CG307200
rosa_wichuraiana	Rw2G001440 Rw7G017270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	49, 384, 387, 524, 533
AfiI	CCNNNNNNNGG	4 cut(s)	37, 145, 585, 605
AgsI	TTSAA	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	3 cut(s)	24, 64, 221
AluI	AGCT	3 cut(s)	24, 64, 221
Alw26I	GTCTC	2 cut(s)	419, 424
AoxI	GGCC	2 cut(s)	118, 596
ApeKI	GCWGC	2 cut(s)	158, 541
AspS9I	GGNCC	1 cut(s)	596
AsuHPI	GGTGA	3 cut(s)	311, 389, 485
BbvI	GCAGC	2 cut(s)	170, 528
BccI	CCATC	8 cut(s)	61, 146, 203, 239, 368, 374, 473, 544
BceAI	ACGGC	3 cut(s)	146, 529, 563
BciT130I	CCWGG	1 cut(s)	276
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	2 cut(s)	419, 424
BfaI	CTAG	3 cut(s)	21, 36, 610
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	6 cut(s)	159, 385, 388, 525, 534, 542
BlsI	GCNGC	6 cut(s)	160, 386, 389, 526, 535, 543
Bme1390I	CCNGG	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	596
BmiI	GGNNCC	1 cut(s)	399
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	1 cut(s)	425
Bpu10I	CCTNAGC	1 cut(s)	569
BpuEI	CTTGAG	1 cut(s)	585
Bsa29I	ATCGAT	1 cut(s)	253
BsaBI	GATNNNNATC	2 cut(s)	198, 249
BsaJI	CCNNGG	3 cut(s)	85, 96, 579
BsaWI	WCCGGW	1 cut(s)	325
BsaXI	ACNNNNNCTCC	4 cut(s)	66, 96, 120, 150
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 145, 585, 605
Bse1I	ACTGG	1 cut(s)	534
Bse3DI	GCAATG	1 cut(s)	536
Bse8I	GATNNNNATC	2 cut(s)	198, 249
BseBI	CCWGG	1 cut(s)	276
BseCI	ATCGAT	1 cut(s)	253
BseDI	CCNNGG	3 cut(s)	85, 96, 579
BseGI	GGATG	3 cut(s)	157, 250, 298
BseJI	GATNNNNATC	2 cut(s)	198, 249
BseLI	CCNNNNNNNGG	4 cut(s)	37, 145, 585, 605
BseMI	GCAATG	1 cut(s)	536
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	1 cut(s)	534
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	2 cut(s)	170, 528
BseYI	CCCAGC	1 cut(s)	221
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	120, 598
BshVI	ATCGAT	1 cut(s)	253
BsiSI	CCGG	1 cut(s)	326
BslFI	GGGAC	1 cut(s)	459
BslI	CCNNNNNNNGG	4 cut(s)	37, 145, 585, 605
BsmAI	GTCTC	2 cut(s)	419, 424
BsmBI	CGTCTC	1 cut(s)	419
BsmFI	GGGAC	1 cut(s)	459
BsnI	GGCC	2 cut(s)	120, 598
Bsp143I	GATC	3 cut(s)	102, 250, 487
Bsp19I	CCATGG	1 cut(s)	85
BspACI	CCGC	5 cut(s)	49, 384, 387, 524, 533
BspANI	GGCC	2 cut(s)	120, 598
BspCNI	CTCAG	1 cut(s)	415
BspDI	ATCGAT	1 cut(s)	253
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	399
BsrDI	GCAATG	1 cut(s)	536
BsrI	ACTGG	1 cut(s)	534
BssECI	CCNNGG	3 cut(s)	85, 96, 579
BssMI	GATC	3 cut(s)	102, 250, 487
BssT1I	CCWWGG	2 cut(s)	85, 96
Bst2UI	CCWGG	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	566
BstDEI	CTNAG	2 cut(s)	423, 569
BstDSI	CCRYGG	2 cut(s)	85, 579
BstEII	GGTNACC	1 cut(s)	299
BstF5I	GGATG	3 cut(s)	157, 250, 298
BstKTI	GATC	3 cut(s)	105, 253, 490
BstMAI	GTCTC	2 cut(s)	419, 424
BstMBI	GATC	3 cut(s)	102, 250, 487
BstMWI	GCNNNNNNNGC	2 cut(s)	530, 533
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	568
BstPI	GGTNACC	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	274
BstV1I	GCAGC	2 cut(s)	170, 528
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
Bsu15I	ATCGAT	1 cut(s)	253
BsuRI	GGCC	2 cut(s)	120, 598
BsuTUI	ATCGAT	1 cut(s)	253
BtgI	CCRYGG	2 cut(s)	85, 579
BtsCI	GGATG	3 cut(s)	157, 250, 298
BtsI	GCAGTG	1 cut(s)	490
BtsIMutI	CAGTG	2 cut(s)	490, 527
Cac8I	GCNNGC	1 cut(s)	566
CciI	TCATGA	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	596
ClaI	ATCGAT	1 cut(s)	253
CseI	GACGC	1 cut(s)	436
CviAII	CATG	6 cut(s)	86, 206, 305, 337, 491, 565
DdeI	CTNAG	2 cut(s)	423, 569
DpnI	GATC	3 cut(s)	104, 252, 489
DpnII	GATC	3 cut(s)	102, 250, 487
Eco130I	CCWWGG	2 cut(s)	85, 96
Eco147I	AGGCCT	1 cut(s)	120
Eco91I	GGTNACC	1 cut(s)	299
EcoO65I	GGTNACC	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	2 cut(s)	85, 96
EcoT22I	ATGCAT	1 cut(s)	566
ErhI	CCWWGG	2 cut(s)	85, 96
Esp3I	CGTCTC	1 cut(s)	419
FaeI	CATG	6 cut(s)	89, 209, 308, 340, 494, 568
FalI	AAGNNNNNCTT	2 cut(s)	441, 473
FaqI	GGGAC	1 cut(s)	459
FatI	CATG	6 cut(s)	85, 205, 304, 336, 490, 564
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	6 cut(s)	159, 385, 388, 525, 534, 542
FokI	GGATG	3 cut(s)	164, 257, 305
Fsp4HI	GCNGC	6 cut(s)	159, 385, 388, 525, 534, 542
FspBI	CTAG	3 cut(s)	21, 36, 610
GluI	GCNGC	6 cut(s)	159, 385, 388, 525, 534, 542
GsaI	CCCAGC	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	120, 598
HapII	CCGG	1 cut(s)	326
HgaI	GACGC	1 cut(s)	436
Hin1II	CATG	6 cut(s)	89, 209, 308, 340, 494, 568
HinfI	GANTC	2 cut(s)	333, 556
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	3 cut(s)	311, 389, 485
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	1 cut(s)	424
Hpy188III	TCNNGA	4 cut(s)	15, 175, 206, 401
Hpy8I	GTNNAC	1 cut(s)	505
Hpy99I	CGWCG	1 cut(s)	550
HpyAV	CCTTC	2 cut(s)	66, 89
HpyCH4V	TGCA	3 cut(s)	158, 438, 564
HpyF10VI	GCNNNNNNNGC	2 cut(s)	530, 533
HpyF3I	CTNAG	2 cut(s)	423, 569
Hsp92II	CATG	6 cut(s)	89, 209, 308, 340, 494, 568
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	3 cut(s)	102, 250, 487
LpnPI	CCDG	7 cut(s)	45, 207, 261, 288, 339, 414, 515
Lsp1109I	GCAGC	2 cut(s)	170, 528
LweI	GCATC	1 cut(s)	425
MaeI	CTAG	3 cut(s)	21, 36, 610
MaeIII	GTNAC	3 cut(s)	44, 299, 517
MalI	GATC	3 cut(s)	104, 252, 489
MboI	GATC	3 cut(s)	102, 250, 487
MboII	GAAGA	1 cut(s)	125
MflI	RGATCY	1 cut(s)	102
MluCI	AATT	1 cut(s)	352
MnlI	CCTC	4 cut(s)	149, 175, 340, 609
Mph1103I	ATGCAT	1 cut(s)	566
MseI	TTAA	2 cut(s)	186, 462
MslI	CAYNNNNRTG	2 cut(s)	146, 204
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	2 cut(s)	530, 533
NcoI	CCATGG	1 cut(s)	85
NdeII	GATC	3 cut(s)	102, 250, 487
NlaIII	CATG	6 cut(s)	89, 209, 308, 340, 494, 568
NlaIV	GGNNCC	1 cut(s)	399
NmuCI	GTSAC	3 cut(s)	44, 299, 517
NsiI	ATGCAT	1 cut(s)	566
NspI	RCATGY	1 cut(s)	568
PaeI	GCATGC	1 cut(s)	568
PagI	TCATGA	1 cut(s)	205
PceI	AGGCCT	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	333, 556
PkrI	GCNGC	6 cut(s)	160, 386, 389, 526, 535, 543
Psp6I	CCWGG	1 cut(s)	274
PspEI	GGTNACC	1 cut(s)	299
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	399
PspPI	GGNCC	1 cut(s)	596
PsuI	RGATCY	1 cut(s)	102
RseI	CAYNNNNRTG	2 cut(s)	146, 204
SaqAI	TTAA	2 cut(s)	186, 462
SatI	GCNGC	6 cut(s)	159, 385, 388, 525, 534, 542
Sau3AI	GATC	3 cut(s)	102, 250, 487
Sau96I	GGNCC	1 cut(s)	596
ScrFI	CCNGG	1 cut(s)	276
SfaNI	GCATC	1 cut(s)	425
SmiMI	CAYNNNNRTG	2 cut(s)	146, 204
SmlI	CTYRAG	1 cut(s)	600
SmoI	CTYRAG	1 cut(s)	600
SphI	GCATGC	1 cut(s)	568
Sse9I	AATT	1 cut(s)	352
SseBI	AGGCCT	1 cut(s)	120
SsiI	CCGC	5 cut(s)	49, 384, 387, 524, 533
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	3 cut(s)	21, 36, 610
StuI	AGGCCT	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	2 cut(s)	85, 96
TaqI	TCGA	3 cut(s)	217, 253, 548
TasI	AATT	1 cut(s)	352
TauI	GCSGC	4 cut(s)	387, 390, 527, 536
TfiI	GAWTC	2 cut(s)	333, 556
Tru1I	TTAA	2 cut(s)	186, 462
Tru9I	TTAA	2 cut(s)	186, 462
TscAI	CASTG	2 cut(s)	490, 534
TseFI	GTSAC	3 cut(s)	44, 299, 517
TseI	GCWGC	2 cut(s)	158, 541
Tsp45I	GTSAC	3 cut(s)	44, 299, 517
TspDTI	ATGAA	3 cut(s)	17, 188, 325
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	2 cut(s)	490, 534
XceI	RCATGY	1 cut(s)	568
XspI	CTAG	3 cut(s)	21, 36, 610
Zsp2I	ATGCAT	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.