Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004030

Physical Location & Seq

Genomic Coordinates Forward (+)

17977653 .. 17978807

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G017270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTACATAAAGCACGAGGAAGATCAATTTAATTTGGTTTTGAATATTGGAGAGGGACAAGTGGACAAAGAAATTTCTGGTTTGCTGAAGAAGTGGACAACGGTTTGTGATCGCCGACCTTCAAGGCTGACGGCTCTATACCTTCTCCACGGCTTGTCCTTGGAGATCTTTGTAGGTTTAGGCCTACTCTTACTTCCCCTCTTCATTGTGGTGAAGGGTGCAGCCGTTTGCCCGATTTGGATTGAGGTTACTGGCGATATTCATCGTCATGATGGATTTTGGGCTGGGATTGGATTATTGTTTGGGGATGGAGATCGATATGGGGCAGACTCTGTTCCTGGTTTCTTGAGTTGGGATGTTGGCGACCATGAGTTGTTCTTGGCTTTTCCGGTTAGATTCATGGATTTTGAGGCAGATTGGTTGACGACATCGGTTGATGGTGGTGGTGGCGGCTTGTGGGTTCCAGATATGCTGGGTCGGGTCTTTGACAGCGGCAGGTATTTACGGGTTCTAGGCTACAGCGGTGGTTGCGCTACATCTGGGTGTTGGTCGCAATTATCTACTCGTGCCGGCGTTGGTAGCAACGATGCAAATTGGGAAAAGGCTACCCTGTTAAAAGGTTTGGATCCGTTAAGTGATGATGGTGGCAATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

23.7

Weight (kDa)

4.74

Isoelectric Point (pI)

26.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25210 AT4G31985
malus_domestica	MD02G1011500.v1.1 MD08G1060200.v1.1 MD15G1036400.v1.1 MD15G1157300.v1.1
prunus_persica	Prupe.1G390600_v2.0.a1 Prupe.7G258200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086361
rosa_laevigata	RLG00000015752 RLG00000024908 RLG00000027179 RLG00000032785 RLG00000035324
rosa_roxburghii	Rroxscaffold_1G00005040 Rroxscaffold_2G00154670 Rroxscaffold_3G00251010
rosa_rugosa	Rorug01G0466800 Rorug06G0368500.1
rosa_samantha	Rh1CG058200 Rh1CG281600 Rh2AG017000 Rh2DG193700 Rh3AG170400 Rh3BG149800 Rh3CG186800 Rh6BG489500 Rh6CG495000 Rh6DG480300 Rh7AG287500 Rh7CG307200
rosa_wichuraiana	Rw2G001440 Rw7G017270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	486
AciI	CCGC	3 cut(s)	450, 492, 522
AclWI	GGATC	2 cut(s)	620, 633
AcsI	RAATTY	1 cut(s)	72
AcuI	CTGAAG	1 cut(s)	107
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	2 cut(s)	43, 123
AjnI	CCWGG	1 cut(s)	337
AlwI	GGATC	2 cut(s)	620, 633
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	1 cut(s)	72
AspLEI	GCGC	1 cut(s)	533
AsuHPI	GGTGA	1 cut(s)	223
BamHI	GGATCC	1 cut(s)	625
BauI	CACGAG	2 cut(s)	14, 564
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	4 cut(s)	266, 302, 431, 635
BceAI	ACGGC	3 cut(s)	147, 166, 209
BciT130I	CCWGG	1 cut(s)	339
BfaI	CTAG	1 cut(s)	512
BfmI	CTRYAG	1 cut(s)	517
BfuAI	ACCTGC	1 cut(s)	486
BglII	AGATCT	1 cut(s)	165
BisI	GCNGC	3 cut(s)	222, 451, 493
BlsI	GCNGC	3 cut(s)	223, 452, 494
Bme1390I	CCNGG	1 cut(s)	339
BmiI	GGNNCC	2 cut(s)	462, 627
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	577
BpuEI	CTTGAG	1 cut(s)	367
Bsa29I	ATCGAT	1 cut(s)	316
BsaBI	GATNNNNATC	2 cut(s)	261, 312
BsaJI	CCNNGG	2 cut(s)	148, 159
BsaWI	WCCGGW	1 cut(s)	388
Bse118I	RCCGGY	1 cut(s)	569
Bse1I	ACTGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	655
Bse8I	GATNNNNATC	2 cut(s)	261, 312
BseBI	CCWGG	1 cut(s)	339
BseCI	ATCGAT	1 cut(s)	316
BseDI	CCNNGG	2 cut(s)	148, 159
BseGI	GGATG	2 cut(s)	313, 361
BseJI	GATNNNNATC	2 cut(s)	261, 312
BseMI	GCAATG	1 cut(s)	655
BseNI	ACTGG	1 cut(s)	256
BseXI	GCAGC	1 cut(s)	233
BseYI	CCCAGC	2 cut(s)	284, 472
BsgI	GTGCAG	1 cut(s)	240
BshFI	GGCC	1 cut(s)	183
BshVI	ATCGAT	1 cut(s)	316
BsiSI	CCGG	2 cut(s)	389, 570
BslFI	GGGAC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	69
BsnI	GGCC	1 cut(s)	183
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	5 cut(s)	22, 109, 165, 313, 625
BspACI	CCGC	3 cut(s)	450, 492, 522
BspANI	GGCC	1 cut(s)	183
BspDI	ATCGAT	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	462, 627
BspMI	ACCTGC	1 cut(s)	486
BspPI	GGATC	2 cut(s)	620, 633
BsrDI	GCAATG	1 cut(s)	655
BsrFI	RCCGGY	1 cut(s)	569
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	256
BssAI	RCCGGY	1 cut(s)	569
BssECI	CCNNGG	2 cut(s)	148, 159
BssMI	GATC	5 cut(s)	22, 109, 165, 313, 625
BssSI	CACGAG	2 cut(s)	14, 564
BssT1I	CCWWGG	1 cut(s)	159
Bst2BI	CACGAG	2 cut(s)	14, 564
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	206
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	571
BstDSI	CCRYGG	1 cut(s)	148
BstF5I	GGATG	2 cut(s)	313, 361
BstHHI	GCGC	1 cut(s)	533
BstKTI	GATC	5 cut(s)	25, 112, 168, 316, 628
BstMBI	GATC	5 cut(s)	22, 109, 165, 313, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	528, 579
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	517
BstV1I	GCAGC	1 cut(s)	233
BstX2I	RGATCY	2 cut(s)	165, 625
BstYI	RGATCY	2 cut(s)	165, 625
Bsu15I	ATCGAT	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	183
BsuTUI	ATCGAT	1 cut(s)	316
BtgI	CCRYGG	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	313, 361
BveI	ACCTGC	1 cut(s)	486
Cac8I	GCNNGC	1 cut(s)	571
CaiI	CAGNNNCTG	1 cut(s)	332
CciI	TCATGA	1 cut(s)	268
CfoI	GCGC	1 cut(s)	533
Cfr10I	RCCGGY	1 cut(s)	569
ClaI	ATCGAT	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	3 cut(s)	269, 368, 400
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	5 cut(s)	24, 111, 167, 315, 627
DpnII	GATC	5 cut(s)	22, 109, 165, 313, 625
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	159
Eco147I	AGGCCT	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	3 cut(s)	272, 371, 403
FaiI	YATR	7 cut(s)	8, 139, 270, 321, 369, 401, 470
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	3 cut(s)	268, 367, 399
Fnu4HI	GCNGC	3 cut(s)	222, 451, 493
FokI	GGATG	2 cut(s)	320, 368
Fsp4HI	GCNGC	3 cut(s)	222, 451, 493
FspBI	CTAG	1 cut(s)	512
GlaI	GCGC	1 cut(s)	532
GluI	GCNGC	3 cut(s)	222, 451, 493
GsaI	CCCAGC	2 cut(s)	288, 476
HaeIII	GGCC	1 cut(s)	183
HapII	CCGG	2 cut(s)	389, 570
HhaI	GCGC	1 cut(s)	533
Hin1II	CATG	3 cut(s)	272, 371, 403
Hin6I	GCGC	1 cut(s)	531
HinP1I	GCGC	1 cut(s)	531
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HinfI	GANTC	2 cut(s)	329, 396
HpaII	CCGG	2 cut(s)	389, 570
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	3 cut(s)	64, 96, 423
Hpy188III	TCNNGA	3 cut(s)	269, 346, 464
Hpy8I	GTNNAC	3 cut(s)	64, 96, 423
HpyAV	CCTTC	3 cut(s)	129, 152, 208
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	2 cut(s)	221, 590
HpyF10VI	GCNNNNNNNGC	2 cut(s)	528, 579
Hsp92II	CATG	3 cut(s)	272, 371, 403
HspAI	GCGC	1 cut(s)	531
KroI	GCCGGC	1 cut(s)	569
KroNI	GCCGGC	1 cut(s)	571
Kzo9I	GATC	5 cut(s)	22, 109, 165, 313, 625
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	1 cut(s)	577
MaeI	CTAG	1 cut(s)	512
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	5 cut(s)	24, 111, 167, 315, 627
MboI	GATC	5 cut(s)	22, 109, 165, 313, 625
MboII	GAAGA	3 cut(s)	32, 100, 193
MflI	RGATCY	2 cut(s)	165, 625
MluCI	AATT	5 cut(s)	26, 31, 72, 554, 592
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	5 cut(s)	10, 46, 209, 238, 403
MroNI	GCCGGC	1 cut(s)	569
MseI	TTAA	3 cut(s)	30, 614, 632
MslI	CAYNNNNRTG	3 cut(s)	209, 267, 541
MspA1I	CMGCKG	2 cut(s)	492, 522
MspI	CCGG	2 cut(s)	389, 570
MspR9I	CCNGG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	2 cut(s)	528, 579
NaeI	GCCGGC	1 cut(s)	571
NdeII	GATC	5 cut(s)	22, 109, 165, 313, 625
NgoMIV	GCCGGC	1 cut(s)	569
NlaIII	CATG	3 cut(s)	272, 371, 403
NlaIV	GGNNCC	2 cut(s)	462, 627
PagI	TCATGA	1 cut(s)	268
PceI	AGGCCT	1 cut(s)	183
PdiI	GCCGGC	1 cut(s)	571
PfeI	GAWTC	1 cut(s)	396
PkrI	GCNGC	3 cut(s)	223, 452, 494
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	337
PspFI	CCCAGC	2 cut(s)	284, 472
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	2 cut(s)	462, 627
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	165, 625
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	3 cut(s)	209, 267, 541
SaqAI	TTAA	3 cut(s)	30, 614, 632
SatI	GCNGC	3 cut(s)	222, 451, 493
Sau3AI	GATC	5 cut(s)	22, 109, 165, 313, 625
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	339
SetI	ASST	6 cut(s)	121, 144, 178, 249, 500, 622
SfaNI	GCATC	1 cut(s)	577
SfcI	CTRYAG	1 cut(s)	517
SmiMI	CAYNNNNRTG	3 cut(s)	209, 267, 541
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	5 cut(s)	26, 31, 72, 554, 592
SseBI	AGGCCT	1 cut(s)	183
SsiI	CCGC	3 cut(s)	450, 492, 522
SspI	AATATT	1 cut(s)	46
SspMI	CTAG	1 cut(s)	512
StuI	AGGCCT	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	103
TaqI	TCGA	1 cut(s)	316
TasI	AATT	5 cut(s)	26, 31, 72, 554, 592
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	2 cut(s)	453, 495
TfiI	GAWTC	1 cut(s)	396
Tru1I	TTAA	3 cut(s)	30, 614, 632
Tru9I	TTAA	3 cut(s)	30, 614, 632
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	3 cut(s)	193, 251, 388
TspGWI	ACGGA	1 cut(s)	618
XapI	RAATTY	1 cut(s)	72
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.