RLG00000015752

60S ribosomal protein L39

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004030
Physical Location & Seq
Forward (+)
1194197 .. 1195853
1657 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015752

Sequence Viewer

Length: 504 bp
ATGGATTTTGAGGCGGATTGGTTGACGACATCAGTTGATGGTGGTGGTGGCGGCTTGTGGGTTCCAACTCTGCTGGGTCGGGTCTCTGACAGCGGCAGCTATTTAGGGGTTCTAGGCTACAGCGGTGGTTGCGTTACATCTGGGTGTTGGTCGCAATTCTCTACTCGTGCCGGCGTTGGTAGTAACGATGCAGATTGGGACAAGGCTACCCTGTTAATAGGTTTGGATCCGTTAAGTGGTGATGGTGGCAGTATTCATGTTGTGGTGGTGGAAGACCCAGTTGTGATAGCGGCACTGGGTTTTGTCTGCAAGCCGCTGCTCAAGTCTCCCAGAGCTCCCACAGCGAAAATGCCGTCGCACAAGAGCTTCATCATCAAGAAGAAGCTGGGGAAGAAGATGAGGCAGAACAGGCCCATCCCTCACTGGATCCGCATGAGGACCGACAACACCATCAGGTACAACGCTAAGCGCAGGCACTGGCGCCGCACCAAGCTTGGATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L39

Protein Analysis

168

Amino Acids

18.23

Weight (kDa)

9.96

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L39 PF00832 125 - 165 3.2e-21 Ribosomal L39 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 480
AciI CCGC 8 cut(s) 14, 51, 93, 123, 290, 314, 430, 484
AclWI GGATC 4 cut(s) 221, 234, 421, 434
AcyI GRCGYC 1 cut(s) 481
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 1 cut(s) 236
AjuI GAANNNNNNNTTGG 1 cut(s) 482
AluBI AGCT 5 cut(s) 99, 335, 366, 385, 493
AluI AGCT 5 cut(s) 99, 335, 366, 385, 493
Alw21I GWGCWC 1 cut(s) 337
Alw26I GTCTC 2 cut(s) 88, 330
AlwI GGATC 4 cut(s) 221, 234, 421, 434
AlwNI CAGNNNCTG 1 cut(s) 477
AoxI GGCC 1 cut(s) 410
ApeKI GCWGC 2 cut(s) 96, 316
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
AspLEI GCGC 2 cut(s) 471, 483
AspS9I GGNCC 2 cut(s) 411, 438
AsuHPI GGTGA 1 cut(s) 251
AvaII GGWCC 1 cut(s) 438
BamHI GGATCC 2 cut(s) 226, 426
BanI GGYRCC 1 cut(s) 480
BanII GRGCYC 1 cut(s) 337
BauI CACGAG 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 337
BbvI GCAGC 2 cut(s) 108, 303
BccI CCATC 4 cut(s) 32, 236, 422, 458
BceAI ACGGC 1 cut(s) 337
BcoDI GTCTC 2 cut(s) 88, 330
BfaI CTAG 1 cut(s) 113
BfmI CTRYAG 1 cut(s) 118
BfoI RGCGCY 1 cut(s) 484
BisI GCNGC 7 cut(s) 52, 94, 97, 291, 314, 317, 484
BlpI GCTNAGC 1 cut(s) 465
BlsI GCNGC 7 cut(s) 53, 95, 98, 292, 315, 318, 485
Bme18I GGWCC 1 cut(s) 438
BmgT120I GGNCC 2 cut(s) 411, 438
BmiI GGNNCC 4 cut(s) 63, 228, 428, 482
BmrI ACTGGG 2 cut(s) 272, 305
BmsI GCATC 1 cut(s) 178
BmuI ACTGGG 2 cut(s) 272, 305
BpiI GAAGAC 1 cut(s) 279
Bpu1102I GCTNAGC 1 cut(s) 465
BpuEI CTTGAG 1 cut(s) 305
BsaHI GRCGYC 1 cut(s) 481
BsaI GGTCTC 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 4 cut(s) 278, 300, 428, 482
BseGI GGATG 1 cut(s) 414
BseLI CCNNNNNNNGG 1 cut(s) 236
BseNI ACTGG 4 cut(s) 278, 300, 428, 482
BseXI GCAGC 2 cut(s) 108, 303
BseYI CCCAGC 2 cut(s) 73, 385
BshFI GGCC 1 cut(s) 412
BshNI GGYRCC 1 cut(s) 480
BsiHKAI GWGCWC 1 cut(s) 337
BsiSI CCGG 1 cut(s) 171
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 236
BsmAI GTCTC 2 cut(s) 88, 330
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 1 cut(s) 412
Bso31I GGTCTC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 2 cut(s) 226, 426
Bsp1720I GCTNAGC 1 cut(s) 465
BspACI CCGC 8 cut(s) 14, 51, 93, 123, 290, 314, 430, 484
BspANI GGCC 1 cut(s) 412
BspLI GGNNCC 4 cut(s) 63, 228, 428, 482
BspPI GGATC 4 cut(s) 221, 234, 421, 434
BspT107I GGYRCC 1 cut(s) 480
BspTNI GGTCTC 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 170
BsrI ACTGG 4 cut(s) 278, 300, 428, 482
BssAI RCCGGY 1 cut(s) 170
BssMI GATC 2 cut(s) 226, 426
BssNI GRCGYC 1 cut(s) 481
BssSI CACGAG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 481
BstC8I GCNNGC 3 cut(s) 172, 311, 473
BstDEI CTNAG 1 cut(s) 465
BstF5I GGATG 1 cut(s) 414
BstH2I RGCGCY 1 cut(s) 484
BstHHI GCGC 2 cut(s) 471, 483
BstKTI GATC 2 cut(s) 229, 429
BstMAI GTCTC 2 cut(s) 88, 330
BstMBI GATC 2 cut(s) 226, 426
BstMWI GCNNNNNNNGC 3 cut(s) 129, 341, 409
BstSFI CTRYAG 1 cut(s) 118
BstV1I GCAGC 2 cut(s) 108, 303
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 2 cut(s) 226, 426
BstYI RGATCY 2 cut(s) 226, 426
BsuRI GGCC 1 cut(s) 412
BtsCI GGATG 1 cut(s) 414
BtsIMutI CAGTG 3 cut(s) 293, 421, 475
Cac8I GCNNGC 3 cut(s) 172, 311, 473
CaiI CAGNNNCTG 1 cut(s) 477
CfoI GCGC 2 cut(s) 471, 483
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 2 cut(s) 411, 438
Csp6I GTAC 1 cut(s) 457
CviAII CATG 2 cut(s) 257, 433
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 1 cut(s) 465
DinI GGCGCC 1 cut(s) 482
DpnI GATC 2 cut(s) 228, 428
DpnII GATC 2 cut(s) 226, 426
EciI GGCGGA 1 cut(s) 29
Ecl136II GAGCTC 1 cut(s) 335
Eco24I GRGCYC 1 cut(s) 337
Eco31I GGTCTC 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 438
Eco53kI GAGCTC 1 cut(s) 335
EcoICRI GAGCTC 1 cut(s) 335
EcoT38I GRGCYC 1 cut(s) 337
EgeI GGCGCC 1 cut(s) 482
EheI GGCGCC 1 cut(s) 482
FaeI CATG 2 cut(s) 260, 436
FaiI YATR 2 cut(s) 258, 434
FaqI GGGAC 1 cut(s) 212
FatI CATG 2 cut(s) 256, 432
Fnu4HI GCNGC 7 cut(s) 52, 94, 97, 291, 314, 317, 484
FokI GGATG 1 cut(s) 401
FriOI GRGCYC 1 cut(s) 337
Fsp4HI GCNGC 7 cut(s) 52, 94, 97, 291, 314, 317, 484
FspBI CTAG 1 cut(s) 113
GlaI GCGC 2 cut(s) 470, 482
GluI GCNGC 7 cut(s) 52, 94, 97, 291, 314, 317, 484
GsaI CCCAGC 2 cut(s) 77, 389
HaeII RGCGCY 1 cut(s) 484
HaeIII GGCC 1 cut(s) 412
HapII CCGG 1 cut(s) 171
HhaI GCGC 2 cut(s) 471, 483
Hin1I GRCGYC 1 cut(s) 481
Hin1II CATG 2 cut(s) 260, 436
Hin6I GCGC 2 cut(s) 469, 481
HinP1I GCGC 2 cut(s) 469, 481
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 1 cut(s) 498
HpaII CCGG 1 cut(s) 171
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 24
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 1 cut(s) 376
Hpy8I GTNNAC 1 cut(s) 24
Hpy99I CGWCG 1 cut(s) 358
HpyCH4V TGCA 2 cut(s) 191, 309
HpyF10VI GCNNNNNNNGC 3 cut(s) 129, 341, 409
HpyF3I CTNAG 1 cut(s) 465
Hsp92I GRCGYC 1 cut(s) 481
Hsp92II CATG 2 cut(s) 260, 436
HspAI GCGC 2 cut(s) 469, 481
KasI GGCGCC 1 cut(s) 480
KroI GCCGGC 1 cut(s) 170
KroNI GCCGGC 1 cut(s) 172
Kzo9I GATC 2 cut(s) 226, 426
LmnI GCTCC 1 cut(s) 340
Lsp1109I GCAGC 2 cut(s) 108, 303
LweI GCATC 1 cut(s) 178
MaeI CTAG 1 cut(s) 113
MaeIII GTNAC 2 cut(s) 133, 182
MalI GATC 2 cut(s) 228, 428
MboI GATC 2 cut(s) 226, 426
MboII GAAGA 4 cut(s) 284, 391, 403, 406
MflI RGATCY 2 cut(s) 226, 426
MhlI GDGCHC 1 cut(s) 337
MluCI AATT 1 cut(s) 155
Mly113I GGCGCC 1 cut(s) 481
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 4 cut(s) 4, 393, 429, 429
MroNI GCCGGC 1 cut(s) 170
MseI TTAA 2 cut(s) 215, 233
MslI CAYNNNNRTG 1 cut(s) 142
MspA1I CMGCKG 3 cut(s) 93, 123, 316
MspI CCGG 1 cut(s) 171
MwoI GCNNNNNNNGC 3 cut(s) 129, 341, 409
NaeI GCCGGC 1 cut(s) 172
NarI GGCGCC 1 cut(s) 481
NdeII GATC 2 cut(s) 226, 426
NgoMIV GCCGGC 1 cut(s) 170
NlaIII CATG 2 cut(s) 260, 436
NlaIV GGNNCC 4 cut(s) 63, 228, 428, 482
PdiI GCCGGC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 498
PkrI GCNGC 7 cut(s) 53, 95, 98, 292, 315, 318, 485
PluTI GGCGCC 1 cut(s) 484
Psp124BI GAGCTC 1 cut(s) 337
PspFI CCCAGC 2 cut(s) 73, 385
PspN4I GGNNCC 4 cut(s) 63, 228, 428, 482
PspPI GGNCC 2 cut(s) 411, 438
PstNI CAGNNNCTG 1 cut(s) 477
PsuI RGATCY 2 cut(s) 226, 426
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
RseI CAYNNNNRTG 1 cut(s) 142
SacI GAGCTC 1 cut(s) 337
SaqAI TTAA 2 cut(s) 215, 233
SatI GCNGC 7 cut(s) 52, 94, 97, 291, 314, 317, 484
Sau3AI GATC 2 cut(s) 226, 426
Sau96I GGNCC 2 cut(s) 411, 438
SduI GDGCHC 1 cut(s) 337
SetI ASST 7 cut(s) 101, 223, 337, 368, 387, 458, 495
SfaNI GCATC 1 cut(s) 178
SfcI CTRYAG 1 cut(s) 118
SfoI GGCGCC 1 cut(s) 482
SinI GGWCC 1 cut(s) 438
SmiMI CAYNNNNRTG 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 1 cut(s) 155
SsiI CCGC 8 cut(s) 14, 51, 93, 123, 290, 314, 430, 484
SspDI GGCGCC 1 cut(s) 480
SspMI CTAG 1 cut(s) 113
SstI GAGCTC 1 cut(s) 337
TaqII GACCGA 1 cut(s) 455
TasI AATT 1 cut(s) 155
TauI GCSGC 5 cut(s) 54, 96, 293, 316, 486
TfiI GAWTC 1 cut(s) 498
Tru1I TTAA 2 cut(s) 215, 233
Tru9I TTAA 2 cut(s) 215, 233
TscAI CASTG 3 cut(s) 300, 428, 482
TseI GCWGC 2 cut(s) 96, 316
TspDTI ATGAA 2 cut(s) 245, 358
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 3 cut(s) 300, 428, 482
VpaK11BI GGWCC 1 cut(s) 438
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.