RLG00000024908

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0004030
Physical Location & Seq
Forward (+)
40221978 .. 40222941
964 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024908

Sequence Viewer

Length: 570 bp
ATGAAAACTCTCTCTCGACCTAGCTCTCTCCCTACTAGGGTTTGTGACCGCCTACCTACAAGGCTGACGGCTCCATACCTTCTCCATAGCTTGTCCTTGGAGATCTTTGTAGGTTTAGGCCTACTCTTACTTCCTTTCTTCATTGTGGTGGAGGGTGCAGCCGTTTGCCCGATTTGGACAGAGGTTAATGGCGATATTCATTATCATGATGGATTTCGGGCTAGGATTGGATTATTGTTTGGGGATGGAGATAGATATGGGGCAGACTCTGTTCCTGGTTTCTTGAGTTGGGATGTTGGCGTCCATGAGTTGTTCTTGGTTTTTCCGGTTAGATTCATGGATTTTGAGGCGGATTGGTTGACGACATCAGTTGATGGTGGTGGTGGCGGCTTGTGGGTTCCAGCTCTGCTGGGTCGGGTCTTTGACGGCGGCAGCTATTTAAGGGTTTTAGGCTACAGCGGTGGTTGCGCTACGTCTGGGTGTTGGTCGCAATTCTCTACTCGTGCCGGCGTTGGTAGCAACGATGCAGATTGGGACAAGGCTACCCTGTTAATAGGGTTGGATCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

20.43

Weight (kDa)

4.88

Isoelectric Point (pI)

32.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 49, 350, 387, 429, 459
AclWI GGATC 1 cut(s) 557
AcyI GRCGYC 1 cut(s) 300
AfiI CCNNNNNNNGG 1 cut(s) 37
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 4 cut(s) 24, 90, 404, 435
AluI AGCT 4 cut(s) 24, 90, 404, 435
AlwI GGATC 1 cut(s) 557
AlwNI CAGNNNCTG 1 cut(s) 269
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 2 cut(s) 158, 432
AspLEI GCGC 1 cut(s) 470
BamHI GGATCC 1 cut(s) 562
BauI CACGAG 1 cut(s) 501
BbvI GCAGC 2 cut(s) 170, 444
BccI CCATC 3 cut(s) 203, 239, 368
BceAI ACGGC 3 cut(s) 84, 146, 442
BciT130I CCWGG 1 cut(s) 276
BfaI CTAG 3 cut(s) 21, 36, 222
BfmI CTRYAG 1 cut(s) 454
BglII AGATCT 1 cut(s) 102
BisI GCNGC 4 cut(s) 159, 388, 430, 433
BlsI GCNGC 4 cut(s) 160, 389, 431, 434
Bme1390I CCNGG 1 cut(s) 276
BmiI GGNNCC 3 cut(s) 72, 399, 564
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 1 cut(s) 514
BpuEI CTTGAG 1 cut(s) 304
BsaHI GRCGYC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 325
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse118I RCCGGY 1 cut(s) 506
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 2 cut(s) 250, 298
BseLI CCNNNNNNNGG 1 cut(s) 37
BseXI GCAGC 2 cut(s) 170, 444
BseYI CCCAGC 1 cut(s) 409
BsgI GTGCAG 1 cut(s) 177
BshFI GGCC 1 cut(s) 120
BsiSI CCGG 2 cut(s) 326, 507
BslFI GGGAC 1 cut(s) 548
BslI CCNNNNNNNGG 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 548
BsnI GGCC 1 cut(s) 120
Bsp143I GATC 2 cut(s) 102, 562
BspACI CCGC 5 cut(s) 49, 350, 387, 429, 459
BspANI GGCC 1 cut(s) 120
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 3 cut(s) 72, 399, 564
BspPI GGATC 1 cut(s) 557
BsrFI RCCGGY 1 cut(s) 506
BssAI RCCGGY 1 cut(s) 506
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 2 cut(s) 102, 562
BssNI GRCGYC 1 cut(s) 300
BssSI CACGAG 1 cut(s) 501
BssT1I CCWWGG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 501
Bst2UI CCWGG 1 cut(s) 276
BstACI GRCGYC 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 508
BstF5I GGATG 2 cut(s) 250, 298
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 2 cut(s) 105, 565
BstMBI GATC 2 cut(s) 102, 562
BstMWI GCNNNNNNNGC 2 cut(s) 465, 516
BstNI CCWGG 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 274
BstSFI CTRYAG 1 cut(s) 454
BstV1I GCAGC 2 cut(s) 170, 444
BstX2I RGATCY 2 cut(s) 102, 562
BstYI RGATCY 2 cut(s) 102, 562
BsuRI GGCC 1 cut(s) 120
BtsCI GGATG 2 cut(s) 250, 298
Cac8I GCNNGC 1 cut(s) 508
CaiI CAGNNNCTG 1 cut(s) 269
CciI TCATGA 1 cut(s) 205
CfoI GCGC 1 cut(s) 470
Cfr10I RCCGGY 1 cut(s) 506
CseI GACGC 1 cut(s) 289
CviAII CATG 3 cut(s) 206, 305, 337
DpnI GATC 2 cut(s) 104, 564
DpnII GATC 2 cut(s) 102, 562
EciI GGCGGA 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 96
Eco147I AGGCCT 1 cut(s) 120
EcoRII CCWGG 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 3 cut(s) 209, 308, 340
FaiI YATR 6 cut(s) 76, 87, 207, 258, 306, 338
FaqI GGGAC 1 cut(s) 548
FatI CATG 3 cut(s) 205, 304, 336
Fnu4HI GCNGC 4 cut(s) 159, 388, 430, 433
FokI GGATG 2 cut(s) 257, 305
Fsp4HI GCNGC 4 cut(s) 159, 388, 430, 433
FspBI CTAG 3 cut(s) 21, 36, 222
GlaI GCGC 1 cut(s) 469
GluI GCNGC 4 cut(s) 159, 388, 430, 433
GsaI CCCAGC 1 cut(s) 413
HaeIII GGCC 1 cut(s) 120
HapII CCGG 2 cut(s) 326, 507
HgaI GACGC 1 cut(s) 289
HhaI GCGC 1 cut(s) 470
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 3 cut(s) 209, 308, 340
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HinfI GANTC 2 cut(s) 266, 333
HpaII CCGG 2 cut(s) 326, 507
Hpy166II GTNNAC 1 cut(s) 360
Hpy188III TCNNGA 3 cut(s) 15, 206, 283
Hpy8I GTNNAC 1 cut(s) 360
HpyAV CCTTC 1 cut(s) 89
HpyCH4IV ACGT 1 cut(s) 473
HpyCH4V TGCA 2 cut(s) 158, 527
HpyF10VI GCNNNNNNNGC 2 cut(s) 465, 516
HpySE526I ACGT 1 cut(s) 473
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 3 cut(s) 209, 308, 340
HspAI GCGC 1 cut(s) 468
KroI GCCGGC 1 cut(s) 506
KroNI GCCGGC 1 cut(s) 508
Kzo9I GATC 2 cut(s) 102, 562
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 8 cut(s) 261, 288, 339, 395, 414, 462, 520, 560
Lsp1109I GCAGC 2 cut(s) 170, 444
LweI GCATC 1 cut(s) 514
MaeI CTAG 3 cut(s) 21, 36, 222
MaeII ACGT 1 cut(s) 473
MaeIII GTNAC 1 cut(s) 44
MalI GATC 2 cut(s) 104, 564
MboI GATC 2 cut(s) 102, 562
MboII GAAGA 1 cut(s) 130
MflI RGATCY 2 cut(s) 102, 562
MluCI AATT 1 cut(s) 491
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 540
MnlI CCTC 3 cut(s) 145, 175, 340
MroNI GCCGGC 1 cut(s) 506
MseI TTAA 3 cut(s) 186, 440, 551
MslI CAYNNNNRTG 2 cut(s) 146, 204
MspA1I CMGCKG 1 cut(s) 459
MspI CCGG 2 cut(s) 326, 507
MspR9I CCNGG 1 cut(s) 276
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 2 cut(s) 465, 516
NaeI GCCGGC 1 cut(s) 508
NdeII GATC 2 cut(s) 102, 562
NgoMIV GCCGGC 1 cut(s) 506
NlaIII CATG 3 cut(s) 209, 308, 340
NlaIV GGNNCC 3 cut(s) 72, 399, 564
NmuCI GTSAC 1 cut(s) 44
PagI TCATGA 1 cut(s) 205
PceI AGGCCT 1 cut(s) 120
PdiI GCCGGC 1 cut(s) 508
PfeI GAWTC 1 cut(s) 333
PkrI GCNGC 4 cut(s) 160, 389, 431, 434
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 274
PspFI CCCAGC 1 cut(s) 409
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 3 cut(s) 72, 399, 564
PstNI CAGNNNCTG 1 cut(s) 269
PsuI RGATCY 2 cut(s) 102, 562
RseI CAYNNNNRTG 2 cut(s) 146, 204
SaqAI TTAA 3 cut(s) 186, 440, 551
SatI GCNGC 4 cut(s) 159, 388, 430, 433
Sau3AI GATC 2 cut(s) 102, 562
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 276
SfaNI GCATC 1 cut(s) 514
SfcI CTRYAG 1 cut(s) 454
SmiMI CAYNNNNRTG 2 cut(s) 146, 204
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
Sse9I AATT 1 cut(s) 491
SseBI AGGCCT 1 cut(s) 120
SsiI CCGC 5 cut(s) 49, 350, 387, 429, 459
SspMI CTAG 3 cut(s) 21, 36, 222
StuI AGGCCT 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 274
StyI CCWWGG 1 cut(s) 96
TaiI ACGT 1 cut(s) 476
TaqI TCGA 1 cut(s) 16
TasI AATT 1 cut(s) 491
TauI GCSGC 2 cut(s) 390, 432
TfiI GAWTC 1 cut(s) 333
Tru1I TTAA 3 cut(s) 186, 440, 551
Tru9I TTAA 3 cut(s) 186, 440, 551
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 2 cut(s) 158, 432
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 4 cut(s) 17, 130, 188, 325
TspGWI ACGGA 1 cut(s) 555
XspI CTAG 3 cut(s) 21, 36, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.