Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004030

Physical Location & Seq

Genomic Coordinates Reverse (-)

66067930 .. 66069215

Gene Structure 1286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG495000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGACTTTGAGGCGGATTGGTTGACGACATCGGTTGATGGTGGTGGTGGCGACTTGTGGGTTCCAGATATGTTGGGTCGTGTCTCTGACAGCGGCAGCTATTTAGGGGTTCTAGGCTACAGCAGTGGTTGTGCTGCATCTGGGTGTTGGTCACAATTCTCTACTCGTGCCGGCGCTGGCAGCAACGATGCAGATTGGGACAAGGCTACCCTGTTAAAAGGGTTGGATCCGCTAAGTGGTGATGGTGGCAGTGATCATGCTGTGGTGGTGGACAACCAAGTTGTGATAGCGGCACCGGCGGCATTGCTGCCGTCGATGGAGATTCTGTGCATGCTAGGATCACATGTCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

11.95

Weight (kDa)

4.05

Isoelectric Point (pI)

26.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25210 AT4G31985
malus_domestica	MD02G1011500.v1.1 MD08G1060200.v1.1 MD15G1036400.v1.1 MD15G1157300.v1.1
prunus_persica	Prupe.1G390600_v2.0.a1 Prupe.7G258200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086361
rosa_laevigata	RLG00000015752 RLG00000024908 RLG00000027179 RLG00000032785 RLG00000035324
rosa_roxburghii	Rroxscaffold_1G00005040 Rroxscaffold_2G00154670 Rroxscaffold_3G00251010
rosa_rugosa	Rorug01G0466800 Rorug06G0368500.1
rosa_samantha	Rh1CG058200 Rh1CG281600 Rh2AG017000 Rh2DG193700 Rh3AG170400 Rh3BG149800 Rh3CG186800 Rh6BG489500 Rh6CG495000 Rh6DG480300 Rh7AG287500 Rh7CG307200
rosa_wichuraiana	Rw2G001440 Rw7G017270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	292
AciI	CCGC	5 cut(s)	14, 93, 230, 290, 299
AclWI	GGATC	3 cut(s)	221, 234, 346
AfiI	CCNNNNNNNGG	1 cut(s)	236
AflIII	ACRYGT	1 cut(s)	343
AluBI	AGCT	1 cut(s)	99
AluI	AGCT	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	3 cut(s)	221, 234, 346
ApeKI	GCWGC	4 cut(s)	96, 134, 180, 307
AspLEI	GCGC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	251
BamHI	GGATCC	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	292
BauI	CACGAG	1 cut(s)	165
BbvI	GCAGC	4 cut(s)	108, 121, 192, 294
BccI	CCATC	3 cut(s)	32, 236, 310
BceAI	ACGGC	1 cut(s)	295
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	2 cut(s)	113, 335
BfmI	CTRYAG	1 cut(s)	118
BfoI	RGCGCY	1 cut(s)	177
BisI	GCNGC	7 cut(s)	94, 97, 135, 181, 291, 300, 308
BlsI	GCNGC	7 cut(s)	95, 98, 136, 182, 292, 301, 309
BmiI	GGNNCC	3 cut(s)	63, 228, 294
BmsI	GCATC	2 cut(s)	146, 178
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse118I	RCCGGY	2 cut(s)	170, 295
Bse3DI	GCAATG	1 cut(s)	302
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMI	GCAATG	1 cut(s)	302
BseXI	GCAGC	4 cut(s)	108, 121, 192, 294
BshNI	GGYRCC	1 cut(s)	292
BsiSI	CCGG	2 cut(s)	171, 296
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	212
Bsp143I	GATC	3 cut(s)	226, 253, 338
BspACI	CCGC	5 cut(s)	14, 93, 230, 290, 299
BspLI	GGNNCC	3 cut(s)	63, 228, 294
BspPI	GGATC	3 cut(s)	221, 234, 346
BspT107I	GGYRCC	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	302
BsrFI	RCCGGY	2 cut(s)	170, 295
BssAI	RCCGGY	2 cut(s)	170, 295
BssMI	GATC	3 cut(s)	226, 253, 338
BssSI	CACGAG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	165
BstC8I	GCNNGC	3 cut(s)	172, 178, 332
BstDEI	CTNAG	1 cut(s)	233
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	3 cut(s)	229, 256, 341
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	3 cut(s)	226, 253, 338
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 296, 299
BstNSI	RCATGY	2 cut(s)	334, 347
BstSFI	CTRYAG	1 cut(s)	118
BstV1I	GCAGC	4 cut(s)	108, 121, 192, 294
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BtsI	GCAGTG	2 cut(s)	130, 256
BtsIMutI	CAGTG	2 cut(s)	130, 256
Cac8I	GCNNGC	3 cut(s)	172, 178, 332
CfoI	GCGC	1 cut(s)	176
Cfr10I	RCCGGY	2 cut(s)	170, 295
CviAII	CATG	3 cut(s)	257, 331, 344
CviJI	RGCY	3 cut(s)	99, 117, 206
CviKI_1	RGCY	3 cut(s)	99, 117, 206
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	3 cut(s)	228, 255, 340
DpnII	GATC	3 cut(s)	226, 253, 338
EciI	GGCGGA	1 cut(s)	29
FaeI	CATG	3 cut(s)	260, 334, 347
FaiI	YATR	4 cut(s)	71, 258, 332, 345
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	3 cut(s)	256, 330, 343
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	7 cut(s)	94, 97, 135, 181, 291, 300, 308
Fsp4HI	GCNGC	7 cut(s)	94, 97, 135, 181, 291, 300, 308
FspBI	CTAG	2 cut(s)	113, 335
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	7 cut(s)	94, 97, 135, 181, 291, 300, 308
HaeII	RGCGCY	1 cut(s)	177
HapII	CCGG	2 cut(s)	171, 296
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	3 cut(s)	260, 334, 347
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HinfI	GANTC	1 cut(s)	322
HpaII	CCGG	2 cut(s)	171, 296
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	2 cut(s)	24, 271
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	2 cut(s)	24, 271
Hpy99I	CGWCG	1 cut(s)	316
HpyCH4V	TGCA	3 cut(s)	137, 191, 330
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 296, 299
HpyF3I	CTNAG	1 cut(s)	233
Hsp92II	CATG	3 cut(s)	260, 334, 347
HspAI	GCGC	1 cut(s)	174
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	226, 253, 338
LpnPI	CCDG	6 cut(s)	78, 126, 162, 184, 224, 309
Lsp1109I	GCAGC	4 cut(s)	108, 121, 192, 294
LweI	GCATC	2 cut(s)	146, 178
MaeI	CTAG	2 cut(s)	113, 335
MaeIII	GTNAC	1 cut(s)	150
MalI	GATC	3 cut(s)	228, 255, 340
MboI	GATC	3 cut(s)	226, 253, 338
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	1 cut(s)	4
MroNI	GCCGGC	1 cut(s)	170
MseI	TTAA	1 cut(s)	215
MslI	CAYNNNNRTG	1 cut(s)	142
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	2 cut(s)	171, 296
MwoI	GCNNNNNNNGC	3 cut(s)	180, 296, 299
NaeI	GCCGGC	1 cut(s)	172
NdeII	GATC	3 cut(s)	226, 253, 338
NgoMIV	GCCGGC	1 cut(s)	170
NlaIII	CATG	3 cut(s)	260, 334, 347
NlaIV	GGNNCC	3 cut(s)	63, 228, 294
NmuCI	GTSAC	1 cut(s)	150
NspI	RCATGY	2 cut(s)	334, 347
PaeI	GCATGC	1 cut(s)	334
PciI	ACATGT	1 cut(s)	343
PdiI	GCCGGC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	7 cut(s)	95, 98, 136, 182, 292, 301, 309
PscI	ACATGT	1 cut(s)	343
PspN4I	GGNNCC	3 cut(s)	63, 228, 294
PsuI	RGATCY	1 cut(s)	226
RseI	CAYNNNNRTG	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	7 cut(s)	94, 97, 135, 181, 291, 300, 308
Sau3AI	GATC	3 cut(s)	226, 253, 338
SetI	ASST	1 cut(s)	101
SfaNI	GCATC	2 cut(s)	146, 178
SfcI	CTRYAG	1 cut(s)	118
SgrAI	CRCCGGYG	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	142
SphI	GCATGC	1 cut(s)	334
Sse9I	AATT	1 cut(s)	155
SsiI	CCGC	5 cut(s)	14, 93, 230, 290, 299
SspMI	CTAG	2 cut(s)	113, 335
TaqI	TCGA	2 cut(s)	314, 348
TasI	AATT	1 cut(s)	155
TauI	GCSGC	3 cut(s)	96, 293, 302
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	2 cut(s)	130, 256
TseFI	GTSAC	1 cut(s)	150
TseI	GCWGC	4 cut(s)	96, 134, 180, 307
Tsp45I	GTSAC	1 cut(s)	150
TspRI	CASTG	2 cut(s)	130, 256
XceI	RCATGY	2 cut(s)	334, 347
XspI	CTAG	2 cut(s)	113, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.