Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004030

Physical Location & Seq

Genomic Coordinates Reverse (-)

32215939 .. 32221756

Gene Structure 5818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG307200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCTCTACACCTTCTCCATGGCTTGTCCTTGGAGATCTTTGTAGGTTTAGGCCTACTCTTACTTCTTCTCCTCATTATGGTGGATGGTGCAGCCGTTTGCCCTATCTTGACGGAGGTTAATGGCGATATTCATCGTCATGATGGATTTCGAGCTGGGATTGGATTATTGTTTGGGGATGGAGATCGATATGGGGCAGACTTTGTTCCTGGTTTATTGAGTTGGGATGTTGGTGACCATGAGTTGCTCTTGGTTTTTCCGGTTAGATTCATGGACTTTGAGGCTAATTGGTTGGCGACATCGGTTGATGGTGATGGCGGCGGCTTATGGGTTCCAGATATGTTGGGTCGTGTCTCTGAGACGCAACGATGCAGATTGGGACAAGGCTACCTTGTTAAAAGAAGTGGTGATGATGGCAGTGATCATGCTGTGGTAGTGGACGACCAAGTTGTGACAGCGGCACTGGCGGCATTGCTGCCGTCGATGGAGATTCTATGCATGCTAAGAGAGGCGATTGATTCCAGGTCGGGGTCGGGTGTTGCATCAACTTTGGGCGGCCGCTGTTTTGCTGTGGTGGTCGAGTTGATCAGTGTGACAAGCTCATACCGCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

21.72

Weight (kDa)

4.61

Isoelectric Point (pI)

26.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25210 AT4G31985
malus_domestica	MD02G1011500.v1.1 MD08G1060200.v1.1 MD15G1036400.v1.1 MD15G1157300.v1.1
prunus_persica	Prupe.1G390600_v2.0.a1 Prupe.7G258200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086361
rosa_laevigata	RLG00000015752 RLG00000024908 RLG00000027179 RLG00000032785 RLG00000035324
rosa_roxburghii	Rroxscaffold_1G00005040 Rroxscaffold_2G00154670 Rroxscaffold_3G00251010
rosa_rugosa	Rorug01G0466800 Rorug06G0368500.1
rosa_samantha	Rh1CG058200 Rh1CG281600 Rh2AG017000 Rh2DG193700 Rh3AG170400 Rh3BG149800 Rh3CG186800 Rh6BG489500 Rh6CG495000 Rh6DG480300 Rh7AG287500 Rh7CG307200
rosa_wichuraiana	Rw2G001440 Rw7G017270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	609
AciI	CCGC	8 cut(s)	318, 321, 458, 467, 555, 559, 607, 609
AcoI	YGGCCR	1 cut(s)	556
AfiI	CCNNNNNNNGG	2 cut(s)	79, 528
AjnI	CCWGG	2 cut(s)	208, 521
AluBI	AGCT	2 cut(s)	155, 600
AluI	AGCT	2 cut(s)	155, 600
Alw26I	GTCTC	2 cut(s)	353, 358
AoxI	GGCC	2 cut(s)	52, 556
ApeKI	GCWGC	2 cut(s)	92, 475
AsuHPI	GGTGA	3 cut(s)	245, 323, 419
BbvI	GCAGC	2 cut(s)	104, 462
BccI	CCATC	7 cut(s)	80, 137, 173, 302, 308, 407, 478
BceAI	ACGGC	2 cut(s)	80, 463
BciT130I	CCWGG	2 cut(s)	210, 523
BclI	TGATCA	2 cut(s)	421, 585
BcoDI	GTCTC	2 cut(s)	353, 358
BglII	AGATCT	1 cut(s)	36
BisI	GCNGC	8 cut(s)	93, 319, 322, 459, 468, 476, 556, 559
BlsI	GCNGC	8 cut(s)	94, 320, 323, 460, 469, 477, 557, 560
Bme1390I	CCNGG	2 cut(s)	210, 523
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	2 cut(s)	210, 523
BmsI	GCATC	2 cut(s)	359, 551
Bsa29I	ATCGAT	1 cut(s)	187
BsaBI	GATNNNNATC	2 cut(s)	132, 183
BsaJI	CCNNGG	3 cut(s)	19, 30, 607
BsaWI	WCCGGW	1 cut(s)	259
BsaXI	ACNNNNNCTCC	3 cut(s)	30, 54, 84
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 528
Bse1I	ACTGG	1 cut(s)	468
Bse3DI	GCAATG	1 cut(s)	470
Bse8I	GATNNNNATC	2 cut(s)	132, 183
BseBI	CCWGG	2 cut(s)	210, 523
BseCI	ATCGAT	1 cut(s)	187
BseDI	CCNNGG	3 cut(s)	19, 30, 607
BseGI	GGATG	3 cut(s)	91, 184, 232
BseJI	GATNNNNATC	2 cut(s)	132, 183
BseLI	CCNNNNNNNGG	2 cut(s)	79, 528
BseMI	GCAATG	1 cut(s)	470
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	468
BseRI	GAGGAG	1 cut(s)	62
BseX3I	CGGCCG	1 cut(s)	556
BseXI	GCAGC	2 cut(s)	104, 462
BseYI	CCCAGC	1 cut(s)	155
BsgI	GTGCAG	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	609
Bsh1285I	CGRYCG	1 cut(s)	559
BshFI	GGCC	2 cut(s)	54, 558
BshVI	ATCGAT	1 cut(s)	187
BsiEI	CGRYCG	1 cut(s)	559
BsiSI	CCGG	1 cut(s)	260
BslFI	GGGAC	1 cut(s)	393
BslI	CCNNNNNNNGG	2 cut(s)	79, 528
BsmAI	GTCTC	2 cut(s)	353, 358
BsmBI	CGTCTC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	393
BsnI	GGCC	2 cut(s)	54, 558
Bsp143I	GATC	4 cut(s)	36, 184, 421, 585
Bsp19I	CCATGG	1 cut(s)	19
BspACI	CCGC	8 cut(s)	318, 321, 458, 467, 555, 559, 607, 609
BspANI	GGCC	2 cut(s)	54, 558
BspCNI	CTCAG	1 cut(s)	349
BspDI	ATCGAT	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	609
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	333
BsrDI	GCAATG	1 cut(s)	470
BsrI	ACTGG	1 cut(s)	468
BssECI	CCNNGG	3 cut(s)	19, 30, 607
BssMI	GATC	4 cut(s)	36, 184, 421, 585
BssT1I	CCWWGG	2 cut(s)	19, 30
Bst2UI	CCWGG	2 cut(s)	210, 523
BstC8I	GCNNGC	1 cut(s)	500
BstDEI	CTNAG	2 cut(s)	357, 503
BstDSI	CCRYGG	2 cut(s)	19, 607
BstEII	GGTNACC	1 cut(s)	233
BstF5I	GGATG	3 cut(s)	91, 184, 232
BstFNI	CGCG	1 cut(s)	609
BstKTI	GATC	4 cut(s)	39, 187, 424, 588
BstMAI	GTCTC	2 cut(s)	353, 358
BstMBI	GATC	4 cut(s)	36, 184, 421, 585
BstMCI	CGRYCG	1 cut(s)	559
BstMWI	GCNNNNNNNGC	3 cut(s)	464, 467, 606
BstNI	CCWGG	2 cut(s)	210, 523
BstNSI	RCATGY	1 cut(s)	502
BstPI	GGTNACC	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	208, 521
BstUI	CGCG	1 cut(s)	609
BstV1I	GCAGC	2 cut(s)	104, 462
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BstZI	CGGCCG	1 cut(s)	556
Bsu15I	ATCGAT	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	54, 558
BsuTUI	ATCGAT	1 cut(s)	187
BtgI	CCRYGG	2 cut(s)	19, 607
BtsCI	GGATG	3 cut(s)	91, 184, 232
BtsI	GCAGTG	1 cut(s)	424
BtsIMutI	CAGTG	3 cut(s)	424, 461, 595
Cac8I	GCNNGC	1 cut(s)	500
CciI	TCATGA	1 cut(s)	139
CciNI	GCGGCCGC	1 cut(s)	556
Cfr42I	CCGCGG	1 cut(s)	610
ClaI	ATCGAT	1 cut(s)	187
CseI	GACGC	1 cut(s)	370
CviAII	CATG	6 cut(s)	20, 140, 239, 271, 425, 499
DdeI	CTNAG	2 cut(s)	357, 503
DpnI	GATC	4 cut(s)	38, 186, 423, 587
DpnII	GATC	4 cut(s)	36, 184, 421, 585
EaeI	YGGCCR	1 cut(s)	556
EagI	CGGCCG	1 cut(s)	556
EclXI	CGGCCG	1 cut(s)	556
Eco130I	CCWWGG	2 cut(s)	19, 30
Eco147I	AGGCCT	1 cut(s)	54
Eco52I	CGGCCG	1 cut(s)	556
Eco91I	GGTNACC	1 cut(s)	233
EcoO65I	GGTNACC	1 cut(s)	233
EcoRII	CCWGG	2 cut(s)	208, 521
EcoT14I	CCWWGG	2 cut(s)	19, 30
EcoT22I	ATGCAT	1 cut(s)	500
ErhI	CCWWGG	2 cut(s)	19, 30
Esp3I	CGTCTC	1 cut(s)	353
FaeI	CATG	6 cut(s)	23, 143, 242, 274, 428, 502
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	6 cut(s)	19, 139, 238, 270, 424, 498
FbaI	TGATCA	2 cut(s)	421, 585
Fnu4HI	GCNGC	8 cut(s)	93, 319, 322, 459, 468, 476, 556, 559
FokI	GGATG	3 cut(s)	98, 191, 239
Fsp4HI	GCNGC	8 cut(s)	93, 319, 322, 459, 468, 476, 556, 559
GluI	GCNGC	8 cut(s)	93, 319, 322, 459, 468, 476, 556, 559
GsaI	CCCAGC	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	54, 558
HapII	CCGG	1 cut(s)	260
HgaI	GACGC	1 cut(s)	370
Hin1II	CATG	6 cut(s)	23, 143, 242, 274, 428, 502
HinfI	GANTC	3 cut(s)	267, 490, 518
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	3 cut(s)	245, 323, 419
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	3 cut(s)	109, 140, 335
Hpy8I	GTNNAC	1 cut(s)	439
Hpy99I	CGWCG	1 cut(s)	484
HpyAV	CCTTC	1 cut(s)	23
HpyCH4V	TGCA	4 cut(s)	92, 372, 498, 542
HpyF10VI	GCNNNNNNNGC	3 cut(s)	464, 467, 606
HpyF3I	CTNAG	2 cut(s)	357, 503
Hsp92II	CATG	6 cut(s)	23, 143, 242, 274, 428, 502
Ksp22I	TGATCA	2 cut(s)	421, 585
KspI	CCGCGG	1 cut(s)	610
Kzo9I	GATC	4 cut(s)	36, 184, 421, 585
LpnPI	CCDG	8 cut(s)	141, 195, 222, 273, 348, 449, 508, 535
Lsp1109I	GCAGC	2 cut(s)	104, 462
LweI	GCATC	2 cut(s)	359, 551
MaeIII	GTNAC	3 cut(s)	233, 451, 592
MalI	GATC	4 cut(s)	38, 186, 423, 587
MboI	GATC	4 cut(s)	36, 184, 421, 585
MboII	GAAGA	1 cut(s)	59
MflI	RGATCY	1 cut(s)	36
MluCI	AATT	1 cut(s)	286
MnlI	CCTC	4 cut(s)	83, 109, 274, 502
Mph1103I	ATGCAT	1 cut(s)	500
MseI	TTAA	3 cut(s)	120, 396, 613
MslI	CAYNNNNRTG	2 cut(s)	80, 138
MspA1I	CMGCKG	3 cut(s)	458, 561, 609
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	2 cut(s)	210, 523
MvaI	CCWGG	2 cut(s)	210, 523
MvnI	CGCG	1 cut(s)	609
MwoI	GCNNNNNNNGC	3 cut(s)	464, 467, 606
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	4 cut(s)	36, 184, 421, 585
NlaIII	CATG	6 cut(s)	23, 143, 242, 274, 428, 502
NlaIV	GGNNCC	1 cut(s)	333
NmuCI	GTSAC	3 cut(s)	233, 451, 592
NotI	GCGGCCGC	1 cut(s)	556
NsiI	ATGCAT	1 cut(s)	500
NspI	RCATGY	1 cut(s)	502
PaeI	GCATGC	1 cut(s)	502
PagI	TCATGA	1 cut(s)	139
PceI	AGGCCT	1 cut(s)	54
PfeI	GAWTC	3 cut(s)	267, 490, 518
PkrI	GCNGC	8 cut(s)	94, 320, 323, 460, 469, 477, 557, 560
Psp6I	CCWGG	2 cut(s)	208, 521
PspEI	GGTNACC	1 cut(s)	233
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	2 cut(s)	208, 521
PspN4I	GGNNCC	1 cut(s)	333
PsuI	RGATCY	1 cut(s)	36
RseI	CAYNNNNRTG	2 cut(s)	80, 138
SacII	CCGCGG	1 cut(s)	610
SaqAI	TTAA	3 cut(s)	120, 396, 613
SatI	GCNGC	8 cut(s)	93, 319, 322, 459, 468, 476, 556, 559
Sau3AI	GATC	4 cut(s)	36, 184, 421, 585
ScrFI	CCNGG	2 cut(s)	210, 523
SetI	ASST	7 cut(s)	15, 49, 120, 157, 393, 527, 602
SfaNI	GCATC	2 cut(s)	359, 551
Sfr303I	CCGCGG	1 cut(s)	610
SgrBI	CCGCGG	1 cut(s)	610
SmiMI	CAYNNNNRTG	2 cut(s)	80, 138
SphI	GCATGC	1 cut(s)	502
Sse9I	AATT	1 cut(s)	286
SseBI	AGGCCT	1 cut(s)	54
SsiI	CCGC	8 cut(s)	318, 321, 458, 467, 555, 559, 607, 609
StuI	AGGCCT	1 cut(s)	54
StyD4I	CCNGG	2 cut(s)	208, 521
StyI	CCWWGG	2 cut(s)	19, 30
TaqI	TCGA	4 cut(s)	151, 187, 482, 579
TasI	AATT	1 cut(s)	286
TauI	GCSGC	6 cut(s)	321, 324, 461, 470, 558, 561
TfiI	GAWTC	3 cut(s)	267, 490, 518
Tru1I	TTAA	3 cut(s)	120, 396, 613
Tru9I	TTAA	3 cut(s)	120, 396, 613
TscAI	CASTG	3 cut(s)	424, 468, 595
TseFI	GTSAC	3 cut(s)	233, 451, 592
TseI	GCWGC	2 cut(s)	92, 475
Tsp45I	GTSAC	3 cut(s)	233, 451, 592
TspDTI	ATGAA	2 cut(s)	122, 259
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	3 cut(s)	424, 468, 595
XceI	RCATGY	1 cut(s)	502
Zsp2I	ATGCAT	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.