Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004030

Physical Location & Seq

Genomic Coordinates Forward (+)

55957293 .. 55960740

Gene Structure 3448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0466800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGGTACACCAAATTGGGATCTTTTTTTTAGGGTTGTCTCAGATCTAGGGATGAACTCGCCGGAGCTCAGTGGAAGAATCGGAGCAAGCCACAATGGAAGTCGCAAATCCTATTCCAATTCCATTGAATTCGCTGTGCTTCTGGATACTTGTGTGTTACATTTGGAGGTTTTTCATGAAATGCAACATTTGAGATTAGCGATTCAACTTGAAAAAAAAAGAAAAAAAATCTCTAACGATTGGTTTGGCTCTAGAGGAAGTGACACTGGAGTCACTATCCAGACCTACCAGGTGTCTAATGTTGATAAGGTGAGAATTGATCACATGGCTGTTGCTTTGTCAAAGACATTCAAGTCACCAGTAGTGGATACCATACAATGTCTTCCTCAACATCAACAGATTATAGTTGTGCTCTGCTGCAAAGCATTTCCGTGGTGTAAAGAAAGATACAACTATAGAAGAGGGAGGGTGGTAGTCCTTGATCTGTTTGCTGATATGAAACTGATATGTGAATTGAACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L39

Protein Analysis

174

Amino Acids

19.9

Weight (kDa)

8.94

Isoelectric Point (pI)

20.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25210 AT4G31985
malus_domestica	MD02G1011500.v1.1 MD08G1060200.v1.1 MD15G1036400.v1.1 MD15G1157300.v1.1
prunus_persica	Prupe.1G390600_v2.0.a1 Prupe.7G258200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086361
rosa_laevigata	RLG00000015752 RLG00000024908 RLG00000027179 RLG00000032785 RLG00000035324
rosa_roxburghii	Rroxscaffold_1G00005040 Rroxscaffold_2G00154670 Rroxscaffold_3G00251010
rosa_rugosa	Rorug01G0466800 Rorug06G0368500.1
rosa_samantha	Rh1CG058200 Rh1CG281600 Rh2AG017000 Rh2DG193700 Rh3AG170400 Rh3BG149800 Rh3CG186800 Rh6BG489500 Rh6CG495000 Rh6DG480300 Rh7AG287500 Rh7CG307200
rosa_wichuraiana	Rw2G001440 Rw7G017270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	269, 352
AclWI	GGATC	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	128
AfaI	GTAC	1 cut(s)	7
AgsI	TTSAA	5 cut(s)	128, 206, 212, 352, 517
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
Alw21I	GWGCWC	2 cut(s)	69, 414
Alw26I	GTCTC	1 cut(s)	43
AlwI	GGATC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	417
ApoI	RAATTY	1 cut(s)	128
AsuHPI	GGTGA	2 cut(s)	322, 348
BaeI	ACNNNNGTAYC	2 cut(s)	138, 171
BanII	GRGCYC	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	374
Bbv12I	GWGCWC	2 cut(s)	69, 414
BbvI	GCAGC	1 cut(s)	404
BciT130I	CCWGG	1 cut(s)	290
BciVI	GTATCC	2 cut(s)	139, 361
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	2 cut(s)	47, 252
BfmI	CTRYAG	1 cut(s)	454
BfuI	GTATCC	2 cut(s)	139, 361
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	1 cut(s)	418
BlsI	GCNGC	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	290
BmrFI	CCNGG	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	374
BpmI	CTGGAG	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	431
Bse1I	ACTGG	2 cut(s)	271, 359
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	1 cut(s)	57
BseMII	CTCAG	2 cut(s)	54, 82
BseNI	ACTGG	2 cut(s)	271, 359
BseXI	GCAGC	1 cut(s)	404
BsiHKAI	GWGCWC	2 cut(s)	69, 414
BsiSI	CCGG	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	43
Bsp1286I	GDGCHC	2 cut(s)	69, 414
Bsp143I	GATC	4 cut(s)	19, 43, 319, 481
BspCNI	CTCAG	2 cut(s)	53, 81
BspHI	TCATGA	1 cut(s)	175
BspPI	GGATC	1 cut(s)	27
BsrI	ACTGG	2 cut(s)	271, 359
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	4 cut(s)	19, 43, 319, 481
Bst2UI	CCWGG	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	454
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	2 cut(s)	40, 68
BstDSI	CCRYGG	1 cut(s)	431
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	4 cut(s)	22, 46, 322, 484
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	4 cut(s)	19, 43, 319, 481
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	288
BstSFI	CTRYAG	1 cut(s)	454
BstV1I	GCAGC	1 cut(s)	404
BstV2I	GAAGAC	1 cut(s)	374
BstX2I	RGATCY	2 cut(s)	19, 43
BstYI	RGATCY	2 cut(s)	19, 43
BsuI	GTATCC	2 cut(s)	139, 361
BtgI	CCRYGG	1 cut(s)	431
BtsCI	GGATG	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	76, 264
Cac8I	GCNNGC	1 cut(s)	88
CciI	TCATGA	1 cut(s)	175
CsiI	ACCWGGT	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	2 cut(s)	176, 325
CviJI	RGCY	4 cut(s)	67, 90, 249, 329
CviKI_1	RGCY	4 cut(s)	67, 90, 249, 329
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	2 cut(s)	40, 68
DpnI	GATC	4 cut(s)	21, 45, 321, 483
DpnII	GATC	4 cut(s)	19, 43, 319, 481
DrdI	GACNNNNNNGTC	2 cut(s)	269, 352
DseDI	GACNNNNNNGTC	2 cut(s)	269, 352
Eam1104I	CTCTTC	1 cut(s)	454
EarI	CTCTTC	1 cut(s)	454
Ecl136II	GAGCTC	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	69
Eco53kI	GAGCTC	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	69
FaeI	CATG	2 cut(s)	179, 328
FaiI	YATR	7 cut(s)	177, 326, 374, 404, 456, 497, 508
FatI	CATG	2 cut(s)	175, 324
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	1 cut(s)	418
FokI	GGATG	1 cut(s)	64
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	418
FspBI	CTAG	2 cut(s)	47, 252
GluI	GCNGC	1 cut(s)	418
GsuI	CTGGAG	1 cut(s)	288
HapII	CCGG	1 cut(s)	62
Hin1II	CATG	2 cut(s)	179, 328
HinfI	GANTC	3 cut(s)	78, 202, 270
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	2 cut(s)	322, 348
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	2 cut(s)	43, 83
Hpy188III	TCNNGA	4 cut(s)	143, 176, 252, 280
Hpy8I	GTNNAC	1 cut(s)	8
HpyCH4V	TGCA	2 cut(s)	184, 420
HpyF3I	CTNAG	2 cut(s)	40, 68
Hsp92II	CATG	2 cut(s)	179, 328
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	4 cut(s)	19, 43, 319, 481
LmnI	GCTCC	2 cut(s)	64, 83
LpnPI	CCDG	7 cut(s)	75, 128, 252, 275, 293, 302, 372
Lsp1109I	GCAGC	1 cut(s)	404
MabI	ACCWGGT	1 cut(s)	288
MaeI	CTAG	2 cut(s)	47, 252
MaeIII	GTNAC	4 cut(s)	156, 260, 271, 354
MalI	GATC	4 cut(s)	21, 45, 321, 483
MboI	GATC	4 cut(s)	19, 43, 319, 481
MboII	GAAGA	3 cut(s)	87, 374, 471
MflI	RGATCY	2 cut(s)	19, 43
MhlI	GDGCHC	2 cut(s)	69, 414
MluCI	AATT	5 cut(s)	13, 118, 128, 315, 512
MlyI	GAGTC	1 cut(s)	279
MnlI	CCTC	5 cut(s)	160, 248, 396, 455, 459
MslI	CAYNNNNRTG	1 cut(s)	430
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	290
NdeII	GATC	4 cut(s)	19, 43, 319, 481
NlaIII	CATG	2 cut(s)	179, 328
NmuCI	GTSAC	3 cut(s)	260, 271, 354
PagI	TCATGA	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	78, 202
PkrI	GCNGC	1 cut(s)	419
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
Psp124BI	GAGCTC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PsuI	RGATCY	2 cut(s)	19, 43
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	430
SacI	GAGCTC	1 cut(s)	69
SatI	GCNGC	1 cut(s)	418
Sau3AI	GATC	4 cut(s)	19, 43, 319, 481
SchI	GAGTC	1 cut(s)	279
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	2 cut(s)	69, 414
SetI	ASST	5 cut(s)	69, 171, 287, 294, 312
SexAI	ACCWGGT	1 cut(s)	288
SfcI	CTRYAG	1 cut(s)	454
SmiMI	CAYNNNNRTG	1 cut(s)	430
Sse9I	AATT	5 cut(s)	13, 118, 128, 315, 512
SspMI	CTAG	2 cut(s)	47, 252
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	288
TasI	AATT	5 cut(s)	13, 118, 128, 315, 512
TfiI	GAWTC	2 cut(s)	78, 202
TscAI	CASTG	2 cut(s)	76, 271
TseFI	GTSAC	3 cut(s)	260, 271, 354
TseI	GCWGC	1 cut(s)	417
Tsp45I	GTSAC	3 cut(s)	260, 271, 354
TspDTI	ATGAA	4 cut(s)	68, 164, 192, 512
TspGWI	ACGGA	1 cut(s)	420
TspRI	CASTG	2 cut(s)	76, 271
XapI	RAATTY	1 cut(s)	128
XbaI	TCTAGA	1 cut(s)	251
XspI	CTAG	2 cut(s)	47, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.