Rroxscaffold_2G00154670

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004030
Physical Location & Seq
Reverse (-)
91205772 .. 91206060
289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00154670.1

Sequence Viewer

Length: 165 bp
ATGTTTTTGCAGCCGTCGCACAAGACCTTCATCATCAAGAAGAAGCTGGGGAAGAAGATGAGGCAGAACAGGCCCATCCCTCACTGGATCCGCATGAGGACCGACAACACCATCAGGTACAACGCTAAGCGCAGGCACTGGCGCCGCACTAAGCTTGGATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L39

Protein Analysis

54

Amino Acids

6.82

Weight (kDa)

12.0

Isoelectric Point (pI)

59.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L39 PF00832 12 - 52 2.1e-22 Ribosomal L39 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 141
AciI CCGC 2 cut(s) 91, 145
AclWI GGATC 2 cut(s) 82, 95
AcyI GRCGYC 1 cut(s) 142
AfaI GTAC 1 cut(s) 119
AluBI AGCT 2 cut(s) 46, 154
AluI AGCT 2 cut(s) 46, 154
AlwI GGATC 2 cut(s) 82, 95
AlwNI CAGNNNCTG 1 cut(s) 138
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 10
AspLEI GCGC 2 cut(s) 132, 144
AspS9I GGNCC 2 cut(s) 72, 99
AvaII GGWCC 1 cut(s) 99
BamHI GGATCC 1 cut(s) 87
BanI GGYRCC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 22
BccI CCATC 2 cut(s) 83, 119
BfoI RGCGCY 1 cut(s) 145
BisI GCNGC 2 cut(s) 11, 145
BlpI GCTNAGC 1 cut(s) 126
BlsI GCNGC 2 cut(s) 12, 146
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 2 cut(s) 72, 99
BmiI GGNNCC 2 cut(s) 89, 143
Bpu1102I GCTNAGC 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 142
Bse1I ACTGG 2 cut(s) 89, 143
BseGI GGATG 1 cut(s) 75
BseNI ACTGG 2 cut(s) 89, 143
BseXI GCAGC 1 cut(s) 22
BseYI CCCAGC 1 cut(s) 46
BshFI GGCC 1 cut(s) 73
BshNI GGYRCC 1 cut(s) 141
BsnI GGCC 1 cut(s) 73
Bsp143I GATC 1 cut(s) 87
Bsp1720I GCTNAGC 1 cut(s) 126
BspACI CCGC 2 cut(s) 91, 145
BspANI GGCC 1 cut(s) 73
BspLI GGNNCC 2 cut(s) 89, 143
BspPI GGATC 2 cut(s) 82, 95
BspT107I GGYRCC 1 cut(s) 141
BsrI ACTGG 2 cut(s) 89, 143
BssMI GATC 1 cut(s) 87
BssNI GRCGYC 1 cut(s) 142
BstACI GRCGYC 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 134
BstDEI CTNAG 2 cut(s) 126, 150
BstF5I GGATG 1 cut(s) 75
BstH2I RGCGCY 1 cut(s) 145
BstHHI GCGC 2 cut(s) 132, 144
BstKTI GATC 1 cut(s) 90
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 16, 70
BstV1I GCAGC 1 cut(s) 22
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BsuRI GGCC 1 cut(s) 73
BtsCI GGATG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 82, 136
Cac8I GCNNGC 1 cut(s) 134
CaiI CAGNNNCTG 1 cut(s) 138
CfoI GCGC 2 cut(s) 132, 144
Cfr13I GGNCC 2 cut(s) 72, 99
Csp6I GTAC 1 cut(s) 118
CviAII CATG 1 cut(s) 94
CviJI RGCY 4 cut(s) 13, 46, 73, 154
CviKI_1 RGCY 4 cut(s) 13, 46, 73, 154
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 2 cut(s) 126, 150
DinI GGCGCC 1 cut(s) 143
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 99
EgeI GGCGCC 1 cut(s) 143
EheI GGCGCC 1 cut(s) 143
FaeI CATG 1 cut(s) 97
FaiI YATR 1 cut(s) 95
FatI CATG 1 cut(s) 93
Fnu4HI GCNGC 2 cut(s) 11, 145
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 2 cut(s) 11, 145
GlaI GCGC 2 cut(s) 131, 143
GluI GCNGC 2 cut(s) 11, 145
GsaI CCCAGC 1 cut(s) 50
HaeII RGCGCY 1 cut(s) 145
HaeIII GGCC 1 cut(s) 73
HhaI GCGC 2 cut(s) 132, 144
Hin1I GRCGYC 1 cut(s) 142
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 2 cut(s) 130, 142
HinP1I GCGC 2 cut(s) 130, 142
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 1 cut(s) 159
Hpy188III TCNNGA 1 cut(s) 37
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 10
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 70
HpyF3I CTNAG 2 cut(s) 126, 150
Hsp92I GRCGYC 1 cut(s) 142
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 2 cut(s) 130, 142
KasI GGCGCC 1 cut(s) 141
Kzo9I GATC 1 cut(s) 87
LpnPI CCDG 6 cut(s) 32, 55, 70, 100, 118, 124
Lsp1109I GCAGC 1 cut(s) 22
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 3 cut(s) 52, 64, 67
MflI RGATCY 1 cut(s) 87
Mly113I GGCGCC 1 cut(s) 142
MnlI CCTC 3 cut(s) 54, 90, 90
MwoI GCNNNNNNNGC 2 cut(s) 16, 70
NarI GGCGCC 1 cut(s) 142
NdeII GATC 1 cut(s) 87
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 2 cut(s) 89, 143
PfeI GAWTC 1 cut(s) 159
PkrI GCNGC 2 cut(s) 12, 146
PluTI GGCGCC 1 cut(s) 145
PspFI CCCAGC 1 cut(s) 46
PspN4I GGNNCC 2 cut(s) 89, 143
PspPI GGNCC 2 cut(s) 72, 99
PstNI CAGNNNCTG 1 cut(s) 138
PsuI RGATCY 1 cut(s) 87
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SatI GCNGC 2 cut(s) 11, 145
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 2 cut(s) 72, 99
SetI ASST 4 cut(s) 29, 48, 119, 156
SfoI GGCGCC 1 cut(s) 143
SgeI CNNG 9 cut(s) 34, 49, 59, 82, 97, 106, 127, 145, 151
SinI GGWCC 1 cut(s) 99
SsiI CCGC 2 cut(s) 91, 145
SspDI GGCGCC 1 cut(s) 141
TaqII GACCGA 1 cut(s) 116
TauI GCSGC 1 cut(s) 147
TfiI GAWTC 1 cut(s) 159
TscAI CASTG 2 cut(s) 89, 143
TseI GCWGC 1 cut(s) 10
TspDTI ATGAA 1 cut(s) 19
TspRI CASTG 2 cut(s) 89, 143
VpaK11BI GGWCC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.