AT2G27700

Contains the following InterPro domains Small GTP-binding protein (InterPro IPR005225), Translation elongation factor EFTu EF1A, domain 2 (InterPro IPR004161), Translation initiation factor 2 related (InterPro IPR015760), Protein synthesis factor, GTP-binding (InterPro IPR000795)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
11813949 .. 11816002
2054 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G27700.1

Sequence Viewer

Length: 1440 bp
ATGGATCTGAAGAAGCCGAGTGCTCGAGGTGGAGATGATAAGCAGCAAATTGTTGGCGATGAACACTCTAGACGTAATAAGCTCTCCGAGGAAGACAAAGTCCGTTCTCCCATTTGCTGTATGATGGGTCATATCGATACTGGTAAAACAAAGCTGTTAGATTACATCACAGGAAATGTACAAGAAGGCGAGGCTGGAGGTACCACTCAGAAGATGGGTGCAACATATCTCTCAGCGAGAAACATCCTAGAGAAGACCATGGAACTGAAATCCGATACAAAACTTAAGGTGCCACGTCCACTGTTTATCGATACACCTGGTTACGAGTTCTACACAAATCTTCGCTCAAGAGGCTTAGGTTTGTGTGACTTTGCAATTTTGGTTGTTGACATAATGCATGGGTTAGAGCCACAAACTATAGAATGTCTAAATCTTCTGAGAATGAAGAATACGGAGTTCATTATTGCATTGAATAAGGTGGATAGGCTATATGGATGGAGAATATGTGAAAATGCTCCTATCTTGGAGGCGATGAAGCAACAAACTAAAGATGTTATAAATGAATTTAACATGAGGCTGAATGAGATTATAAACCAGTTTAAGGAGCAAGGACTCAACAGTGAGCTTTATTACAAGAATAAAGAAATGGGAGAAACTTTTAGTATTGTTCCTACTTGTGCTATTAGTGGGGAAGGGATCCCAGATCTATTGTTGTTGTTGGTTCAATTGACTCAGAAAACAATGGTTGAGAAACTAATTACATATGTTGACAAAGTGCAGTGTACTGTCCTAGAGGTCAAAGTTATGGAAGGCTATGGTACAACGATTGATGTTGTGTTGGTAAATGGTGAACTCCATGAAGGTGGTCAAATCGTCGTTTGTGGTCTACAGGGACCTATTGTCACAACGATTAGAGCATTACTGACTCCTCATCCAATAAAGGAGTTGCATGTGAATGGTAATCATGTACATCACGAAGTAATAAAGGCTGCAGAGTGTATCAATATTATTGCCAAGGACCTTGAACATGTAATTGTTGGTACTGCCCTGCATGTCGTTGGACCTGATGATGACATCGAAGCAATTAAGGAGTTGGTTATGGAAGATGTAAACTCAGTTTTGAGCAGGATTGACAAAAGTGGTGAAGGAGTTTATATACAAGCGTCTACATTAGGTTCTTTGGAAGCATTGCTTGAATTCTTGAAGTCCCCAGCTGTAAAGTTACCTGTTGGTGGTATTGGCATAGGGCCTGTGCAAAAGAAGGATGTAATGAAGGCGGGAGTGATGCTCGAGAGGAAAAAGGAATTTGCTACAATTTTGGCTTTAGACGTGGAAGTGACTACAGAGGCTCGTGAACTTGCTGACGAAATGGAAGTTAAAATCTTCTGCTCTGATATCATGTATCATTTATTCGATCAGTATCAGGCATATATATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

479

Amino Acids

53.33

Weight (kDa)

5.28

Isoelectric Point (pI)

28.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 37 - 245 1.5e-29 Elongation factor Tu GTP binding domain
IF-2 PF11987 367 - 474 4.1e-18 Translation-initiation factor 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 557, 590
Acc65I GGTACC 1 cut(s) 200
AccB1I GGYRCC 2 cut(s) 200, 289
AccI GTMKAC 2 cut(s) 886, 1166
AciI CCGC 1 cut(s) 1277
AclWI GGATC 3 cut(s) 12, 691, 704
AcsI RAATTY 3 cut(s) 563, 1196, 1304
AcuI CTGAAG 1 cut(s) 29
AfaI GTAC 6 cut(s) 180, 202, 784, 820, 969, 1042
AfiI CCNNNNNNNGG 2 cut(s) 601, 1232
AflII CTTAAG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 1027
AgsI TTSAA 5 cut(s) 472, 725, 1025, 1196, 1204
AhdI GACNNNNNGTC 1 cut(s) 899
AjiI CACGTC 2 cut(s) 296, 1330
AjnI CCWGG 1 cut(s) 316
AluBI AGCT 4 cut(s) 82, 154, 625, 1214
AluI AGCT 4 cut(s) 82, 154, 625, 1214
Alw21I GWGCWC 1 cut(s) 25
AlwI GGATC 3 cut(s) 12, 691, 704
Ama87I CYCGRG 2 cut(s) 24, 1289
AoxI GGCC 1 cut(s) 1247
ApeKI GCWGC 2 cut(s) 43, 989
ApoI RAATTY 3 cut(s) 563, 1196, 1304
Asp718I GGTACC 1 cut(s) 200
AspS9I GGNCC 4 cut(s) 893, 1018, 1061, 1247
AsuHPI GGTGA 2 cut(s) 860, 1154
AvaI CYCGRG 2 cut(s) 24, 1289
AvaII GGWCC 3 cut(s) 893, 1018, 1061
BamHI GGATCC 1 cut(s) 696
BanI GGYRCC 2 cut(s) 200, 289
BauI CACGAG 1 cut(s) 1350
BbsI GAAGAC 2 cut(s) 99, 260
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 2 cut(s) 55, 976
BccI CCATC 3 cut(s) 118, 208, 489
BciT130I CCWGG 1 cut(s) 318
BfaI CTAG 3 cut(s) 69, 248, 791
BfmI CTRYAG 4 cut(s) 417, 887, 990, 1341
BfrI CTTAAG 1 cut(s) 284
BglII AGATCT 1 cut(s) 703
BisI GCNGC 2 cut(s) 44, 990
BlsI GCNGC 2 cut(s) 45, 991
Bme1390I CCNGG 1 cut(s) 318
Bme18I GGWCC 3 cut(s) 893, 1018, 1061
BmeRI GACNNNNNGTC 1 cut(s) 899
BmeT110I CYCGRG 2 cut(s) 24, 1289
BmgBI CACGTC 2 cut(s) 296, 1330
BmgT120I GGNCC 4 cut(s) 893, 1018, 1061, 1247
BmiI GGNNCC 4 cut(s) 202, 291, 698, 894
BmrFI CCNGG 1 cut(s) 318
BmsI GCATC 1 cut(s) 1275
BpiI GAAGAC 2 cut(s) 99, 260
BplI GAGNNNNNCTC 2 cut(s) 1272, 1304
BpmI CTGGAG 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 355
BpuEI CTTGAG 1 cut(s) 331
Bsa29I ATCGAT 2 cut(s) 135, 309
BsaBI GATNNNNATC 1 cut(s) 1419
BsaJI CCNNGG 3 cut(s) 87, 258, 1014
BsaXI ACNNNNNCTCC 2 cut(s) 490, 520
Bsc4I CCNNNNNNNGG 2 cut(s) 601, 1232
Bse1I ACTGG 2 cut(s) 145, 595
Bse3DI GCAATG 1 cut(s) 1187
Bse8I GATNNNNATC 1 cut(s) 1419
BseBI CCWGG 1 cut(s) 318
BseCI ATCGAT 2 cut(s) 135, 309
BseDI CCNNGG 3 cut(s) 87, 258, 1014
BseGI GGATG 4 cut(s) 243, 500, 931, 1270
BseJI GATNNNNATC 1 cut(s) 1419
BseLI CCNNNNNNNGG 2 cut(s) 601, 1232
BseMI GCAATG 1 cut(s) 1187
BseMII CTCAG 5 cut(s) 221, 246, 428, 746, 1128
BseNI ACTGG 2 cut(s) 145, 595
BseRI GAGGAG 1 cut(s) 918
BseXI GCAGC 2 cut(s) 55, 976
BseYI CCCAGC 1 cut(s) 1210
BsgI GTGCAG 1 cut(s) 797
BshFI GGCC 1 cut(s) 1249
BshNI GGYRCC 2 cut(s) 200, 289
BshVI ATCGAT 2 cut(s) 135, 309
BsiHKAI GWGCWC 1 cut(s) 25
BsiHKCI CYCGRG 2 cut(s) 24, 1289
BslFI GGGAC 2 cut(s) 906, 1192
BslI CCNNNNNNNGG 2 cut(s) 601, 1232
BsmFI GGGAC 2 cut(s) 906, 1192
BsnI GGCC 1 cut(s) 1249
BsoBI CYCGRG 2 cut(s) 24, 1289
Bsp1286I GDGCHC 1 cut(s) 25
Bsp1407I TGTACA 2 cut(s) 178, 967
Bsp143I GATC 4 cut(s) 4, 696, 703, 1414
Bsp19I CCATGG 1 cut(s) 258
BspACI CCGC 1 cut(s) 1277
BspANI GGCC 1 cut(s) 1249
BspCNI CTCAG 5 cut(s) 220, 245, 429, 745, 1127
BspDI ATCGAT 2 cut(s) 135, 309
BspLI GGNNCC 4 cut(s) 202, 291, 698, 894
BspMAI CTGCAG 1 cut(s) 994
BspPI GGATC 3 cut(s) 12, 691, 704
BspT107I GGYRCC 2 cut(s) 200, 289
BspTI CTTAAG 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 1187
BsrGI TGTACA 2 cut(s) 178, 967
BsrI ACTGG 2 cut(s) 145, 595
BssECI CCNNGG 3 cut(s) 87, 258, 1014
BssMI GATC 4 cut(s) 4, 696, 703, 1414
BssSI CACGAG 1 cut(s) 1350
BssT1I CCWWGG 2 cut(s) 258, 1014
Bst2BI CACGAG 1 cut(s) 1350
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 3 cut(s) 303, 620, 787
BstAFI CTTAAG 1 cut(s) 284
BstAUI TGTACA 2 cut(s) 178, 967
BstDEI CTNAG 6 cut(s) 207, 232, 355, 437, 732, 1114
BstDSI CCRYGG 1 cut(s) 258
BstF5I GGATG 4 cut(s) 243, 500, 931, 1270
BstKTI GATC 4 cut(s) 7, 699, 706, 1417
BstMBI GATC 4 cut(s) 4, 696, 703, 1414
BstMWI GCNNNNNNNGC 1 cut(s) 351
BstNI CCWGG 1 cut(s) 318
BstNSI RCATGY 3 cut(s) 953, 1031, 1055
BstSCI CCNGG 1 cut(s) 316
BstSFI CTRYAG 4 cut(s) 417, 887, 990, 1341
BstV1I GCAGC 2 cut(s) 55, 976
BstV2I GAAGAC 2 cut(s) 99, 260
BstX2I RGATCY 3 cut(s) 4, 696, 703
BstXI CCANNNNNNTGG 1 cut(s) 863
BstYI RGATCY 3 cut(s) 4, 696, 703
Bsu15I ATCGAT 2 cut(s) 135, 309
BsuRI GGCC 1 cut(s) 1249
BsuTUI ATCGAT 2 cut(s) 135, 309
BtgI CCRYGG 1 cut(s) 258
BtgZI GCGATG 2 cut(s) 72, 545
BtrI CACGTC 2 cut(s) 296, 1330
BtsCI GGATG 4 cut(s) 243, 500, 931, 1270
BtsI GCAGTG 1 cut(s) 785
BtsIMutI CAGTG 3 cut(s) 299, 625, 785
Cfr13I GGNCC 4 cut(s) 893, 1018, 1061, 1247
ClaI ATCGAT 2 cut(s) 135, 309
CseI GACGC 1 cut(s) 1152
CsiI ACCWGGT 1 cut(s) 316
Csp6I GTAC 6 cut(s) 179, 201, 783, 819, 968, 1041
CviAII CATG 9 cut(s) 259, 398, 571, 857, 950, 965, 1028, 1052, 1399
CviQI GTAC 6 cut(s) 179, 201, 783, 819, 968, 1041
DdeI CTNAG 6 cut(s) 207, 232, 355, 437, 732, 1114
DpnI GATC 4 cut(s) 6, 698, 705, 1416
DpnII GATC 4 cut(s) 4, 696, 703, 1414
DriI GACNNNNNGTC 1 cut(s) 899
Eam1105I GACNNNNNGTC 1 cut(s) 899
Eco130I CCWWGG 2 cut(s) 258, 1014
Eco32I GATATC 1 cut(s) 1396
Eco47I GGWCC 3 cut(s) 893, 1018, 1061
Eco57I CTGAAG 1 cut(s) 29
Eco88I CYCGRG 2 cut(s) 24, 1289
EcoO109I RGGNCCY 3 cut(s) 893, 1018, 1247
EcoRI GAATTC 1 cut(s) 1196
EcoRII CCWGG 1 cut(s) 316
EcoRV GATATC 1 cut(s) 1396
EcoT14I CCWWGG 2 cut(s) 258, 1014
EcoT22I ATGCAT 1 cut(s) 399
ErhI CCWWGG 2 cut(s) 258, 1014
FaeI CATG 9 cut(s) 262, 401, 574, 860, 953, 968, 1031, 1055, 1402
FalI AAGNNNNNCTT 2 cut(s) 1176, 1208
FaqI GGGAC 2 cut(s) 906, 1192
FatI CATG 9 cut(s) 258, 397, 570, 856, 949, 964, 1027, 1051, 1398
FauI CCCGC 1 cut(s) 1270
FauNDI CATATG 1 cut(s) 763
FblI GTMKAC 2 cut(s) 886, 1166
Fnu4HI GCNGC 2 cut(s) 44, 990
FokI GGATG 4 cut(s) 230, 507, 918, 1277
Fsp4HI GCNGC 2 cut(s) 44, 990
FspBI CTAG 3 cut(s) 69, 248, 791
GluI GCNGC 2 cut(s) 44, 990
GsaI CCCAGC 1 cut(s) 1214
GsuI CTGGAG 1 cut(s) 216
HaeIII GGCC 1 cut(s) 1249
HgaI GACGC 1 cut(s) 1152
Hin1II CATG 9 cut(s) 262, 401, 574, 860, 953, 968, 1031, 1055, 1402
HincII GTYRAC 2 cut(s) 388, 769
HindII GTYRAC 2 cut(s) 388, 769
HinfI GANTC 3 cut(s) 612, 730, 925
HphI GGTGA 2 cut(s) 860, 1154
Hpy166II GTNNAC 9 cut(s) 299, 388, 769, 783, 851, 887, 1111, 1167, 1355
Hpy188I TCNGA 7 cut(s) 9, 88, 210, 274, 438, 735, 1393
Hpy188III TCNNGA 6 cut(s) 69, 348, 974, 1201, 1291, 1352
Hpy8I GTNNAC 9 cut(s) 299, 388, 769, 783, 851, 887, 1111, 1167, 1355
Hpy99I CGWCG 1 cut(s) 878
HpyAV CCTTC 7 cut(s) 179, 686, 803, 854, 1139, 1255, 1267
HpyCH4III ACNGT 3 cut(s) 303, 620, 787
HpyCH4IV ACGT 3 cut(s) 73, 295, 1329
HpyCH4V TGCA 9 cut(s) 221, 374, 397, 467, 778, 949, 992, 1051, 1255
HpyF10VI GCNNNNNNNGC 1 cut(s) 351
HpyF3I CTNAG 6 cut(s) 207, 232, 355, 437, 732, 1114
HpySE526I ACGT 3 cut(s) 73, 295, 1329
Hsp92II CATG 9 cut(s) 262, 401, 574, 860, 953, 968, 1031, 1055, 1402
KpnI GGTACC 1 cut(s) 204
Kzo9I GATC 4 cut(s) 4, 696, 703, 1414
LmnI GCTCC 2 cut(s) 520, 604
Lsp1109I GCAGC 2 cut(s) 55, 976
LweI GCATC 1 cut(s) 1275
MabI ACCWGGT 1 cut(s) 316
MaeI CTAG 3 cut(s) 69, 248, 791
MaeII ACGT 3 cut(s) 73, 295, 1329
MaeIII GTNAC 5 cut(s) 320, 365, 901, 1221, 1336
MalI GATC 4 cut(s) 6, 698, 705, 1416
MboI GATC 4 cut(s) 4, 696, 703, 1414
MboII GAAGA 9 cut(s) 22, 104, 223, 265, 332, 425, 457, 1115, 1375
MfeI CAATTG 1 cut(s) 725
MflI RGATCY 3 cut(s) 4, 696, 703
MhlI GDGCHC 1 cut(s) 25
MlyI GAGTC 3 cut(s) 606, 724, 919
MmeI TCCRAC 1 cut(s) 1039
Mph1103I ATGCAT 1 cut(s) 399
MseI TTAA 5 cut(s) 285, 567, 600, 1086, 1377
MslI CAYNNNNRTG 3 cut(s) 861, 954, 1432
MspA1I CMGCKG 1 cut(s) 1214
MspCI CTTAAG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 318
MunI CAATTG 1 cut(s) 725
MvaI CCWGG 1 cut(s) 318
MwoI GCNNNNNNNGC 1 cut(s) 351
NcoI CCATGG 1 cut(s) 258
NdeI CATATG 1 cut(s) 763
NdeII GATC 4 cut(s) 4, 696, 703, 1414
NlaIII CATG 9 cut(s) 262, 401, 574, 860, 953, 968, 1031, 1055, 1402
NlaIV GGNNCC 4 cut(s) 202, 291, 698, 894
NmeAIII GCCGAG 1 cut(s) 42
NmuCI GTSAC 3 cut(s) 365, 901, 1336
NsiI ATGCAT 1 cut(s) 399
NspI RCATGY 3 cut(s) 953, 1031, 1055
PaeR7I CTCGAG 2 cut(s) 24, 1289
PciI ACATGT 1 cut(s) 1027
PflFI GACNNNGTC 1 cut(s) 98
PkrI GCNGC 2 cut(s) 45, 991
PleI GAGTC 3 cut(s) 606, 724, 919
PpsI GAGTC 3 cut(s) 606, 724, 919
PpuMI RGGWCCY 2 cut(s) 893, 1018
PscI ACATGT 1 cut(s) 1027
PsiI TTATAA 2 cut(s) 557, 590
Psp5II RGGWCCY 2 cut(s) 893, 1018
Psp6I CCWGG 1 cut(s) 316
PspFI CCCAGC 1 cut(s) 1210
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 4 cut(s) 202, 291, 698, 894
PspPI GGNCC 4 cut(s) 893, 1018, 1061, 1247
PspPPI RGGWCCY 2 cut(s) 893, 1018
PspXI VCTCGAGB 1 cut(s) 24
PstI CTGCAG 1 cut(s) 994
PsuI RGATCY 3 cut(s) 4, 696, 703
PsyI GACNNNGTC 1 cut(s) 98
PvuII CAGCTG 1 cut(s) 1214
RsaI GTAC 6 cut(s) 180, 202, 784, 820, 969, 1042
RsaNI GTAC 6 cut(s) 179, 201, 783, 819, 968, 1041
RseI CAYNNNNRTG 3 cut(s) 861, 954, 1432
SaqAI TTAA 5 cut(s) 285, 567, 600, 1086, 1377
SatI GCNGC 2 cut(s) 44, 990
Sau3AI GATC 4 cut(s) 4, 696, 703, 1414
Sau96I GGNCC 4 cut(s) 893, 1018, 1061, 1247
SchI GAGTC 3 cut(s) 606, 724, 919
ScrFI CCNGG 1 cut(s) 318
SduI GDGCHC 1 cut(s) 25
SexAI ACCWGGT 1 cut(s) 316
SfaNI GCATC 1 cut(s) 1275
SfcI CTRYAG 4 cut(s) 417, 887, 990, 1341
Sfr274I CTCGAG 2 cut(s) 24, 1289
SinI GGWCC 3 cut(s) 893, 1018, 1061
SlaI CTCGAG 2 cut(s) 24, 1289
SmiMI CAYNNNNRTG 3 cut(s) 861, 954, 1432
SmlI CTYRAG 4 cut(s) 24, 284, 346, 1289
SmoI CTYRAG 4 cut(s) 24, 284, 346, 1289
SsiI CCGC 1 cut(s) 1277
SspI AATATT 1 cut(s) 1006
SspMI CTAG 3 cut(s) 69, 248, 791
StyD4I CCNGG 1 cut(s) 316
StyI CCWWGG 2 cut(s) 258, 1014
TaaI ACNGT 3 cut(s) 303, 620, 787
TaiI ACGT 3 cut(s) 76, 298, 1332
TaqI TCGA 6 cut(s) 25, 135, 309, 1077, 1290, 1413
TatI WGTACW 3 cut(s) 178, 782, 967
Tru1I TTAA 5 cut(s) 285, 567, 600, 1086, 1377
Tru9I TTAA 5 cut(s) 285, 567, 600, 1086, 1377
TscAI CASTG 3 cut(s) 306, 625, 785
TseFI GTSAC 3 cut(s) 365, 901, 1336
TseI GCWGC 2 cut(s) 43, 989
Tsp45I GTSAC 3 cut(s) 365, 901, 1336
TspDTI ATGAA 7 cut(s) 75, 448, 458, 548, 576, 873, 1286
TspGWI ACGGA 2 cut(s) 92, 467
TspRI CASTG 3 cut(s) 306, 625, 785
Tth111I GACNNNGTC 1 cut(s) 98
Vha464I CTTAAG 1 cut(s) 284
VpaK11BI GGWCC 3 cut(s) 893, 1018, 1061
XapI RAATTY 3 cut(s) 563, 1196, 1304
XbaI TCTAGA 1 cut(s) 68
XceI RCATGY 3 cut(s) 953, 1031, 1055
XcmI CCANNNNNNNNNTGG 1 cut(s) 211
XhoI CTCGAG 2 cut(s) 24, 1289
XmiI GTMKAC 2 cut(s) 886, 1166
XspI CTAG 3 cut(s) 69, 248, 791
Zsp2I ATGCAT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.