Rorug04G0365200

eukaryotic translation initiation factor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
53698863 .. 53704319
5457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0365200.1

Sequence Viewer

Length: 1155 bp
ATGGAGAACGACGAAAACGGCGCCGTTCAGAGGAAGCCGAAGGTGAAGGGCAAGCACGATAAGCCTAAGCCTTGGGACGATGACCCCAACATCGACCGCTGGAAGATAGAGAAGTTTGACCCTTCCTGGAACGAGGGCGGCATGCTTGACGTCACCACTTTCTCTACCCTATTCCCTCGTTACAGAGAAAAATATTTGCAAGACGCATGGCCGTCTGTGAAATCTGCTTTAAAAGAGTATGGCATTGCATGCGAGTTGAATCTGGTTGAGGGTTCCATGACAGTGTCCACAACCAGAAAGACTAGAGATCCCTATATTATCGTCAAAGCTAGGGATCTTATCAAACTTTTGTCCAGAAGTGTTCCTGCTCCTCAGGCAATAAAAGTGCTGAATGATGAAATGCAATGTGACATAATCAAGATTAGCAACTTGGTGAGAAGTAAGGAAAAATTTATAAAACGAAGGCAACGTCTTATTGGCCCCAATTCCTCCAGTTTAAAGGCCCTGGAAATACTGACAGGCTGTTATATTCTGATACAAGGAAACACTGTTGCTTCAATGGGTTCATTTAAAGGATTAAAGACAGTTAGGAGGATTGTGGAAGACTGCATTGAGAATAAAATGCATCCGATATTTCATATCAAGATTCTCATGGTGAGGAAAGAACTTGAAAAGGATCCAACACTTGCACAGGAGAACTGGGACAGATTTCTTCCAAAGTTCATGAAGAAAAATGTTAATCAACCCAAACCTAAGCAAAGTAAAAAGAAGAAGCCAGAATATACACCCATACCACCTCCTCAACCACCAAGCAAGGTTGACATACAATTGGCAACTGGAGAATACTTTCTGAGTGACAAAGTAAAATCGGAAAAGAAGTGGAAAGAGCAGCAGGAGAGACAAGCTGGAAAAACAGCAGAAAATAAGCGAAAAAGAGAAGCTGCTTTTGTTCCTCCAGAGGAGCCTGCAATACAGCATAACAAATCAGATGACGGTAACAAAGATGTTGCTGCCCTGGCCACGTCTCTGAAGAAAAAAGCAAGAGAGTACGGAAATCAAAAGTTGATTGAGAACGTAAATCCAGAAGCATATCTTGCAGGATCTGGAGTACCTTCAAAAAAGAAATCCAAGAAATCCAAGGGCTCAAAATCTTAG

Protein Analysis

384

Amino Acids

43.8

Weight (kDa)

9.74

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 53 - 132 2.6e-31 Krr1 KH1 domain
KH_KRR1_2nd PF21800 134 - 225 6.1e-41 KRR1 small subunit processome component, second KH domain
KH_PNO1_2nd PF22891 137 - 209 4.1e-07 Eukaryotic type KH-domain (KH-domain type I)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 455
AatII GACGTC 1 cut(s) 153
AccB1I GGYRCC 1 cut(s) 20
AciI CCGC 2 cut(s) 97, 138
AclWI GGATC 5 cut(s) 302, 342, 671, 684, 1108
AcoI YGGCCR 2 cut(s) 209, 1017
AcsI RAATTY 1 cut(s) 449
AcuI CTGAAG 1 cut(s) 1049
AcyI GRCGYC 2 cut(s) 21, 150
AfaI GTAC 2 cut(s) 1049, 1110
AfiI CCNNNNNNNGG 1 cut(s) 30
AgsI TTSAA 4 cut(s) 259, 558, 671, 1116
AjiI CACGTC 1 cut(s) 1023
AjnI CCWGG 3 cut(s) 125, 504, 1014
AluBI AGCT 3 cut(s) 329, 905, 941
AluI AGCT 3 cut(s) 329, 905, 941
Alw26I GTCTC 2 cut(s) 892, 1029
AlwI GGATC 5 cut(s) 302, 342, 671, 684, 1108
AlwNI CAGNNNCTG 1 cut(s) 1103
AoxI GGCC 4 cut(s) 209, 478, 501, 1017
ApeKI GCWGC 3 cut(s) 889, 941, 1010
ApoI RAATTY 1 cut(s) 449
ArsI GACNNNNNNTTYG 2 cut(s) 454, 486
Asp700I GAANNNNTTC 1 cut(s) 846
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 2 cut(s) 479, 502
AsuHPI GGTGA 4 cut(s) 55, 145, 445, 667
AxyI CCTNAGG 1 cut(s) 372
BalI TGGCCA 1 cut(s) 1019
BamHI GGATCC 1 cut(s) 676
BanI GGYRCC 1 cut(s) 20
BanII GRGCYC 1 cut(s) 1145
BbsI GAAGAC 1 cut(s) 609
BbvI GCAGC 3 cut(s) 901, 928, 997
BceAI ACGGC 3 cut(s) 8, 34, 196
BciT130I CCWGG 3 cut(s) 127, 506, 1016
BcoDI GTCTC 2 cut(s) 892, 1029
BfaI CTAG 2 cut(s) 303, 330
BfoI RGCGCY 1 cut(s) 24
BisI GCNGC 4 cut(s) 139, 890, 942, 1011
BlsI GCNGC 4 cut(s) 140, 891, 943, 1012
Bme1390I CCNGG 3 cut(s) 127, 506, 1016
BmgBI CACGTC 1 cut(s) 1023
BmgT120I GGNCC 2 cut(s) 479, 502
BmiI GGNNCC 5 cut(s) 22, 274, 481, 678, 963
BmrFI CCNGG 3 cut(s) 127, 506, 1016
BmrI ACTGGG 1 cut(s) 709
BmsI GCATC 1 cut(s) 634
BmuI ACTGGG 1 cut(s) 709
BpiI GAAGAC 1 cut(s) 609
BpmI CTGGAG 4 cut(s) 475, 858, 939, 1125
Bpu10I CCTNAGC 2 cut(s) 66, 753
BsaHI GRCGYC 2 cut(s) 21, 150
BsaJI CCNNGG 4 cut(s) 71, 504, 1014, 1137
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse1I ACTGG 3 cut(s) 492, 704, 841
Bse21I CCTNAGG 1 cut(s) 372
Bse3DI GCAATG 2 cut(s) 243, 410
BseBI CCWGG 3 cut(s) 127, 506, 1016
BseDI CCNNGG 4 cut(s) 71, 504, 1014, 1137
BseGI GGATG 1 cut(s) 625
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMI GCAATG 2 cut(s) 243, 410
BseMII CTCAG 2 cut(s) 386, 842
BseNI ACTGG 3 cut(s) 492, 704, 841
BseRI GAGGAG 3 cut(s) 360, 789, 974
BseXI GCAGC 3 cut(s) 901, 928, 997
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 4 cut(s) 211, 480, 503, 1019
BshNI GGYRCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 97
BslFI GGGAC 2 cut(s) 89, 716
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 2 cut(s) 892, 1029
BsmBI CGTCTC 1 cut(s) 1029
BsmFI GGGAC 2 cut(s) 89, 716
BsnI GGCC 4 cut(s) 211, 480, 503, 1019
Bsp1286I GDGCHC 1 cut(s) 1145
Bsp143I GATC 4 cut(s) 307, 334, 676, 1100
BspACI CCGC 2 cut(s) 97, 138
BspANI GGCC 4 cut(s) 211, 480, 503, 1019
BspCNI CTCAG 2 cut(s) 385, 843
BspHI TCATGA 1 cut(s) 723
BspLI GGNNCC 5 cut(s) 22, 274, 481, 678, 963
BspPI GGATC 5 cut(s) 302, 342, 671, 684, 1108
BspT107I GGYRCC 1 cut(s) 20
BsrDI GCAATG 2 cut(s) 243, 410
BsrI ACTGG 3 cut(s) 492, 704, 841
BssECI CCNNGG 4 cut(s) 71, 504, 1014, 1137
BssMI GATC 4 cut(s) 307, 334, 676, 1100
BssNI GRCGYC 2 cut(s) 21, 150
BssT1I CCWWGG 2 cut(s) 71, 1137
Bst2UI CCWGG 3 cut(s) 127, 506, 1016
Bst4CI ACNGT 4 cut(s) 283, 550, 586, 995
BstACI GRCGYC 2 cut(s) 21, 150
BstAPI GCANNNNNTGC 2 cut(s) 249, 1094
BstC8I GCNNGC 4 cut(s) 53, 143, 250, 966
BstDEI CTNAG 5 cut(s) 66, 372, 753, 851, 1152
BstF5I GGATG 1 cut(s) 625
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 4 cut(s) 310, 337, 679, 1103
BstMAI GTCTC 2 cut(s) 892, 1029
BstMBI GATC 4 cut(s) 307, 334, 676, 1100
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 5 cut(s) 61, 249, 374, 1016, 1094
BstNI CCWGG 3 cut(s) 127, 506, 1016
BstNSI RCATGY 2 cut(s) 145, 252
BstSCI CCNGG 3 cut(s) 125, 504, 1014
BstV1I GCAGC 3 cut(s) 901, 928, 997
BstV2I GAAGAC 1 cut(s) 609
BstX2I RGATCY 4 cut(s) 307, 334, 676, 1100
BstYI RGATCY 4 cut(s) 307, 334, 676, 1100
Bsu36I CCTNAGG 1 cut(s) 372
BsuRI GGCC 4 cut(s) 211, 480, 503, 1019
BtrI CACGTC 1 cut(s) 1023
BtsCI GGATG 1 cut(s) 625
BtsIMutI CAGTG 2 cut(s) 288, 546
Cac8I GCNNGC 4 cut(s) 53, 143, 250, 966
CaiI CAGNNNCTG 1 cut(s) 1103
CciI TCATGA 1 cut(s) 723
CfoI GCGC 1 cut(s) 23
Cfr13I GGNCC 2 cut(s) 479, 502
CseI GACGC 1 cut(s) 212
Csp6I GTAC 2 cut(s) 1048, 1109
CviAII CATG 6 cut(s) 142, 207, 249, 277, 652, 724
CviQI GTAC 2 cut(s) 1048, 1109
DdeI CTNAG 5 cut(s) 66, 372, 753, 851, 1152
DinI GGCGCC 1 cut(s) 22
DpnI GATC 4 cut(s) 309, 336, 678, 1102
DpnII GATC 4 cut(s) 307, 334, 676, 1100
DraI TTTAAA 3 cut(s) 231, 498, 571
EaeI YGGCCR 2 cut(s) 209, 1017
Eco130I CCWWGG 2 cut(s) 71, 1137
Eco24I GRGCYC 1 cut(s) 1145
Eco57I CTGAAG 1 cut(s) 1049
Eco81I CCTNAGG 1 cut(s) 372
EcoO109I RGGNCCY 1 cut(s) 502
EcoRII CCWGG 3 cut(s) 125, 504, 1014
EcoT14I CCWWGG 2 cut(s) 71, 1137
EcoT22I ATGCAT 1 cut(s) 627
EcoT38I GRGCYC 1 cut(s) 1145
EgeI GGCGCC 1 cut(s) 22
EheI GGCGCC 1 cut(s) 22
ErhI CCWWGG 2 cut(s) 71, 1137
Esp3I CGTCTC 1 cut(s) 1029
FaeI CATG 6 cut(s) 145, 210, 252, 280, 655, 727
FalI AAGNNNNNCTT 2 cut(s) 1077, 1109
FaqI GGGAC 2 cut(s) 89, 716
FatI CATG 6 cut(s) 141, 206, 248, 276, 651, 723
Fnu4HI GCNGC 4 cut(s) 139, 890, 942, 1011
FokI GGATG 1 cut(s) 612
FriOI GRGCYC 1 cut(s) 1145
Fsp4HI GCNGC 4 cut(s) 139, 890, 942, 1011
FspBI CTAG 2 cut(s) 303, 330
GlaI GCGC 1 cut(s) 22
GluI GCNGC 4 cut(s) 139, 890, 942, 1011
GsuI CTGGAG 4 cut(s) 475, 858, 939, 1125
HaeII RGCGCY 1 cut(s) 24
HaeIII GGCC 4 cut(s) 211, 480, 503, 1019
HgaI GACGC 1 cut(s) 212
HhaI GCGC 1 cut(s) 23
Hin1I GRCGYC 2 cut(s) 21, 150
Hin1II CATG 6 cut(s) 145, 210, 252, 280, 655, 727
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HincII GTYRAC 1 cut(s) 820
HindII GTYRAC 1 cut(s) 820
HinfI GANTC 2 cut(s) 259, 646
HphI GGTGA 4 cut(s) 55, 145, 445, 667
Hpy166II GTNNAC 2 cut(s) 288, 820
Hpy188I TCNGA 7 cut(s) 30, 534, 630, 852, 871, 988, 1029
Hpy188III TCNNGA 7 cut(s) 354, 418, 643, 724, 956, 1082, 1104
Hpy8I GTNNAC 2 cut(s) 288, 820
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 5 cut(s) 34, 40, 132, 456, 1122
HpyCH4III ACNGT 4 cut(s) 283, 550, 586, 995
HpyCH4IV ACGT 4 cut(s) 150, 469, 1022, 1074
HpyCH4V TGCA 8 cut(s) 199, 248, 403, 609, 625, 689, 968, 1097
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 249, 374, 1016, 1094
HpyF3I CTNAG 5 cut(s) 66, 372, 753, 851, 1152
HpySE526I ACGT 4 cut(s) 150, 469, 1022, 1074
Hsp92I GRCGYC 2 cut(s) 21, 150
Hsp92II CATG 6 cut(s) 145, 210, 252, 280, 655, 727
HspAI GCGC 1 cut(s) 21
KasI GGCGCC 1 cut(s) 20
Kzo9I GATC 4 cut(s) 307, 334, 676, 1100
LmnI GCTCC 2 cut(s) 373, 961
Lsp1109I GCAGC 3 cut(s) 901, 928, 997
LweI GCATC 1 cut(s) 634
MaeI CTAG 2 cut(s) 303, 330
MaeII ACGT 4 cut(s) 150, 469, 1022, 1074
MaeIII GTNAC 5 cut(s) 151, 179, 407, 854, 995
MalI GATC 4 cut(s) 309, 336, 678, 1102
MboI GATC 4 cut(s) 307, 334, 676, 1100
MboII GAAGA 6 cut(s) 115, 614, 704, 739, 781, 1042
MfeI CAATTG 1 cut(s) 827
MflI RGATCY 4 cut(s) 307, 334, 676, 1100
MhlI GDGCHC 1 cut(s) 1145
MlsI TGGCCA 1 cut(s) 1019
MluCI AATT 3 cut(s) 449, 484, 827
MluNI TGGCCA 1 cut(s) 1019
Mly113I GGCGCC 1 cut(s) 21
MmeI TCCRAC 1 cut(s) 704
Mox20I TGGCCA 1 cut(s) 1019
Mph1103I ATGCAT 1 cut(s) 627
MroXI GAANNNNTTC 1 cut(s) 846
MscI TGGCCA 1 cut(s) 1019
MseI TTAA 5 cut(s) 230, 497, 570, 578, 738
MslI CAYNNNNRTG 1 cut(s) 281
Msp20I TGGCCA 1 cut(s) 1019
MspA1I CMGCKG 1 cut(s) 99
MspR9I CCNGG 3 cut(s) 127, 506, 1016
MunI CAATTG 1 cut(s) 827
MvaI CCWGG 3 cut(s) 127, 506, 1016
MwoI GCNNNNNNNGC 5 cut(s) 61, 249, 374, 1016, 1094
NarI GGCGCC 1 cut(s) 21
NdeII GATC 4 cut(s) 307, 334, 676, 1100
NlaIII CATG 6 cut(s) 145, 210, 252, 280, 655, 727
NlaIV GGNNCC 5 cut(s) 22, 274, 481, 678, 963
NmuCI GTSAC 3 cut(s) 151, 407, 854
NsiI ATGCAT 1 cut(s) 627
NspI RCATGY 2 cut(s) 145, 252
PaeI GCATGC 2 cut(s) 145, 252
PagI TCATGA 1 cut(s) 723
PcsI WCGNNNNNNNCGW 1 cut(s) 466
PdmI GAANNNNTTC 1 cut(s) 846
PfeI GAWTC 2 cut(s) 259, 646
PflFI GACNNNGTC 1 cut(s) 283
PfoI TCCNGGA 1 cut(s) 125
PkrI GCNGC 4 cut(s) 140, 891, 943, 1012
PluTI GGCGCC 1 cut(s) 24
PsiI TTATAA 1 cut(s) 455
Psp6I CCWGG 3 cut(s) 125, 504, 1014
PspGI CCWGG 3 cut(s) 125, 504, 1014
PspN4I GGNNCC 5 cut(s) 22, 274, 481, 678, 963
PspPI GGNCC 2 cut(s) 479, 502
PstNI CAGNNNCTG 1 cut(s) 1103
PsuI RGATCY 4 cut(s) 307, 334, 676, 1100
PsyI GACNNNGTC 1 cut(s) 283
RsaI GTAC 2 cut(s) 1049, 1110
RsaNI GTAC 2 cut(s) 1048, 1109
RseI CAYNNNNRTG 1 cut(s) 281
SaqAI TTAA 5 cut(s) 230, 497, 570, 578, 738
SatI GCNGC 4 cut(s) 139, 890, 942, 1011
Sau3AI GATC 4 cut(s) 307, 334, 676, 1100
Sau96I GGNCC 2 cut(s) 479, 502
ScrFI CCNGG 3 cut(s) 127, 506, 1016
SduI GDGCHC 1 cut(s) 1145
SfaNI GCATC 1 cut(s) 634
SfoI GGCGCC 1 cut(s) 22
SmiMI CAYNNNNRTG 1 cut(s) 281
SphI GCATGC 2 cut(s) 145, 252
Sse9I AATT 3 cut(s) 449, 484, 827
SsiI CCGC 2 cut(s) 97, 138
SspDI GGCGCC 1 cut(s) 20
SspI AATATT 1 cut(s) 194
SspMI CTAG 2 cut(s) 303, 330
StyD4I CCNGG 3 cut(s) 125, 504, 1014
StyI CCWWGG 2 cut(s) 71, 1137
TaaI ACNGT 4 cut(s) 283, 550, 586, 995
TaiI ACGT 4 cut(s) 153, 472, 1025, 1077
TaqI TCGA 1 cut(s) 93
TasI AATT 3 cut(s) 449, 484, 827
TauI GCSGC 1 cut(s) 141
TfiI GAWTC 2 cut(s) 259, 646
Tru1I TTAA 5 cut(s) 230, 497, 570, 578, 738
Tru9I TTAA 5 cut(s) 230, 497, 570, 578, 738
TscAI CASTG 2 cut(s) 288, 553
TseFI GTSAC 3 cut(s) 151, 407, 854
TseI GCWGC 3 cut(s) 889, 941, 1010
Tsp45I GTSAC 3 cut(s) 151, 407, 854
TspDTI ATGAA 5 cut(s) 411, 555, 626, 712, 740
TspGWI ACGGA 1 cut(s) 1065
TspRI CASTG 2 cut(s) 288, 553
Tth111I GACNNNGTC 1 cut(s) 283
XapI RAATTY 1 cut(s) 449
XceI RCATGY 2 cut(s) 145, 252
XmnI GAANNNNTTC 1 cut(s) 846
XspI CTAG 2 cut(s) 303, 330
ZraI GACGTC 1 cut(s) 151
Zsp2I ATGCAT 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.