Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002582

Physical Location & Seq

Genomic Coordinates Forward (+)

37582924 .. 37590572

Gene Structure 7649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24735

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4137 bp

ATGGGTCGGAAGAAGCCGACTGCTCGTGACGAAGAGAATCCACCGCCAGCGGGTGGTGGTGGAGGAAAATCGAAGAAGAAGAACCTGGTGATCGAAGACGACGAGTATTCCGTCGGAACTGAGCTATCCGAGGAGAGTCAAGTCAAGGAAGAGAAGGTTCCTCCGCCTAGTAAAGGGAAGAGGGGCAAGAAGGGGAGTTCTAAAGCTTCTAAGGGAGTGGATGAGGACTTGGACGATGCCGATGAGGATGCAGATGAGGTTCCCCAAGTTGTTTTCACTGGGAAGAAGAAGGGCAAGAAGAAGAGTGGCGGGAGTAGCGCGTTCAGCTCGTCCAGTTTCGGGTTGCTTGAGGATGAGGATGATAAGGATGCTGAGGATGATGAGCAATCTGGTTTAACAGGCGATGATGAGGAGGAGGATGCTCCGGTGTTGAAATTTTCAGGGAAGAAGAAGCCTTCAAAGTCGACCAAGAAAACCGGGGCTAGTTCGTTTACAGGGTCGGCTTTTGATGCCATTGGTGACGAAGGGGATAGTGATGGCGCGGTTGATGATGAGAGTAATGCAGCTGATGAGAATGACGATGAGCCTGCAATTGCTTTTACAGGGAAAAAGAAGGCTTCCAAGGGTGGAAAGAAGGGTGGGAGTGTGTTTGCAGCAGCCAGCTTTGGTGCCCTTGATGATGCGGAGGAGGATAAGGATGAAAAAAATGATGAGGATGACGATATTCCTCAGATTACTTTCTCTGGTAAGAAAAAGAAGTCATCAAAGGCTTCAAAGAAGAGTGGTGGTAATTCTTTTAGCGAAGCATTGCTTGATGAGGAAGATGATGAAGATACTTCCGTTTCCAAACCAACTAGTGCCGGTGATGATACAGTTGAGGATGAAGATGCATCTATGATAACATTCACAGGTAAGAAGAAGTCTTCAAAGAAGAAAGGTAATAGTGTGTTTACTGCAGTGGGTGAAGATGCTGGGGTTGGGAGTGAAATTACAGATGTAGTTGAGCCCAAACAACCAACTACGGGAACTAGTAAAATTGAAGCTGATAATTCTAACGTTAGTAAGAATAAAGATCCAGAACCTTCAAAAAGTAAGAAAAAGAAGAAGAAGAGTGGAAGGACTGCTCAAGAAGAGGATGATTTGGATAAGATTCTTGCAGAGCTAGGTGAGCTTTCATCGAAACCTGCTGCTCCTCAGAAAGAGGAGACGGTGGAGGTTCAGCCTGCTGATTCTCAGAAAGAGGAGAAAGTTGAGGTTCAACCTGATGCGGTTGCCCCAGTTGATGGTTCTGCTGCAAAGGAAGCTGAAGAAGAGACTGTGGAATCTGCTGCAGCAAAGAAGAAGAAAAAGAAGAAGGAAAAGGAAAAGGAGAAAAAGGCGGCGGCAGCAGCAGCATCTGTAGGTGTCAAGGAGGAAAAACAAGAACAAGCAAAAATTGAGCCAGCAATTGAACCAAAGAAGAAGGAAGTGAAAGGCAAAGCAGCTGAAAAGAAGGTGCCTAAACATGTTAGGGAGATGCAAGAGGCCCTTGCTAGGCGACAGGAAGAAGAAGAGAAGAAGAAAAGGGAAGAAGAGGAGAAACTGAAGAAAGAAGAAGAGGAGAGGCATAAGCAGGAAGAACTTGAGAAGCAAAAGGAGGAGGCAAAGCGGAAGAAAAAGGAGAGGGAAAAGGAGAAGATCCAAGAGTTGAAGAAGGCAGGTTTATATAAAACTCCCAAGCAAAAAGAAGAGGAGAAGCGGCGGGAGCAAAAGAGACTCCAATTACTTAGGGATTTACCTAATGCAGTGGAGGGTGTGCCTCCTACCACAGACAATGAAAAACCGGCTAAAAGACCCTTGTATCAGAAAAAGAAGTCAAAACCAGCACCCAATCAGGCAAATGGTGCAGCTACTACGAAGCCTGTGGAAAGCACAGAAGGAATAAAAGAAGAAAACCAGCAGGTTACTGTTCCTGAGCTGGATTCTGTGGGACTTGAGAAGGATGATGAGCAGGAATCAGTTGAAGTAGCAGAAAAGCTATCTGAAGTTTCTGAATCTGTTAAAGAGAATGGATTGGAACAAGAAGAGGATGATGGTGATGATGATGAATGGGATGCAAAGAGCTGGGATGATGATGCTGTTGTTAATCTTTCATTTAAACGTGGGTTTTCTGATGAAGAGGTTGAACCTGTTGTGAATAAAGGGATGAAGCCTGCAGTGCAGAAAACCGTTCCTTCTCAACCAATAAAACCTCATGATGTTGAGAATCAGAAAAAACAAGCTGAGGTGGAAGTTGACAAAGGTAGGAAGAAAGATGCTACTGCAAAGAAAGAAGCACCAAATTCAGATTCTGCCTCTAAACAGAGTGAAGATAATCTTCGCTCTCCCATTTGCTGCATTATGGGCCATGTTGATACTGGTAAAACTAAGCTTCTGGATTGTATCCGAGGCACAAATGTTCAGGAGGGTGAGGCTGGAGGTATTACTCAACAGATTGGTGCTACGTATTTTCCTGCGGATAATATCCGTGAGAGGACTAAAGAACTGAAAGCTGATGCAAAGCTGAAGGTTCCAGGTCTATTGGTCATTGATACCCCTGGCCACGAGTCATTTACTAATTTAAGGTCACGGGGTTCAGGTTTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGCTTAGAGCCTCAAACAATAGAGTCACTCAATCTCTTGAAAATGAGGAATACCGAATTCATTGTTGCATTGAATAAGGTGGACAGGCTCTATGGGTGGAAAACCTGCCGCAACCAGCCAATAGGGAAGGCAATGAAGCAACAATCCAAGGATGTAGTAAATGAGTTCAATATGAGGGTTTCTCAGATTATCACCCAATTCATGGAGCAGGGCTTAAATACTGAATTGTATTATAAGAATAAAGAAATGGGAGAAACATACAGTATTGTACCTACAAGTGCCATTAGTGGTGAAGGGATTCCAGATTTGTTATTACTATTGATTCAGTGGGCCCAGAAAACTATGGTTGAGAAACTTACTTACAGCAATGAAATTCAGTGTACGGTATTGGAGGTCAAGGTTATTGAAGGTCTTGGGACAACAATCGATGTTGTGTTGGTTAATGGTGTGCTTCATGAAGGGGATCAAATAGTCGTTTGTGGCATGCAGGGACCTATTGTTACTTCAATTCGAGCTTTGTTGACACCACATCCCATGAAAGAACTTCGTGTCAAGGGAACTTATCAGCACCATAGTCAAATCAAAGCTGCACAAGGTATCAAGATCACAGCACAGGGACTTGAACATGCTATTGCTGGCACTGCTCTATATGTTGTTGGGCCTAGCGATGACTTGGATGATATCAAGGAAACAGCTATGGAAGATATGAAATCAGTCATGAATAGGATTGACAAGAGTGGTGAGGGAGTTTGTGTACAAGCATCTACTCTAGGATCCTTGGAAGCATTGCTAGAGTTTTTGAAGACGCCAGAAGTTAATATTCCTGTTAGTGGTATTAGCATCGGCCCTGTACACAAGAAGGATGTCATGAAGGCCAGTGTAATGCTTGAAAAGAAAAAAGAGTATGCCACTATCTTGGCATTTGATGTTAAAGTGACACCTGAGTCCCGGGACCTTGCAGATGAATTGGGTGTGAAGATTTTTATTGCTGATATAATCTATCACTTATTTGACCAATTTAAGGCCTATATCGACAATCTCAAAGAGGAAAAGAAGAAGGAAGCCGCTGATGAAGCTGTTTTTCCATGTGTGCTCAAGATTTTACCCAACTGTGTTTTCAACAAGAAGGATCCAATTGTGTTGGGTGTTGATGTTCTTGAAGGCATTGCAAAGGTAGGGACTCCAATTTGCATTCCTCAGAGAGATTTTATTGATATTGGACGCATTGCATCCATTGAGAATAACCACAAACCCGTAGATATAGCGAAAAAGGGGCTGAAGGTGGCTATCAAGATAGTCGGCACAAATTCTGATGAGCAGCAAAAGATGTATGGTAGGCATTTTGAAATTGAAGATGAGCTTGTCAGCCATATCTCCAGGAGGTCAATTGATGTACTTAAAACAAGCTACCGGGATGAACTGTCAATTGACGAGTGGAAGCTGGTTGTGAAATTGAAGAAACTTTTTGAGATACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002181 GO:0002183 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019538 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0033290 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0070993 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 ko03013 map00195 map01100 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 IF-2

Protein Analysis

1378

Amino Acids

151.28

Weight (kDa)

5.22

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	789 - 998	4.4e-34	Elongation factor Tu GTP binding domain
IF-2	PF11987	1115 - 1227	1.9e-22	Translation-initiation factor 2
GTP_EFTU_D4	PF14578	1248 - 1321	1.5e-14	Elongation factor Tu domain 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21160 AT1G76720 AT1G76720 AT1G76810 AT2G27700 AT2G27700
fragaria_vesca	FvH4_2g13940 FvH4_2g13940 FvH4_2g13940 FvH4_4g36100 FvH4_4g36312
malus_domestica	MD05G1023200.v1.1 MD09G1087100.v1.1 MD10G1024100.v1.1
prunus_persica	Prupe.2G099300_v2.0.a1 Prupe.8G027900_v2.0.a1
pyrus_communis	pycom05g01470 pycom09g01240 pycom10g01600
rosa_chinensis	RchiOBHm_Chr4g0445721 RchiOBHm_Chr6g0275701
rosa_laevigata	RLG00000005714 RLG00000013337 RLG00000013444
rosa_multiflora	Rmu_co8469881.1_g000001 Rmu_sc0003637.1_g000011 Rmu_sc0003637.1_g000012 Rmu_sc0007122.1_g000003
rosa_roxburghii	Rroxscaffold_7G00193000
rosa_rugosa	Rorug04G0365200 Rorug06G0095700
rosa_samantha	Rh4AG426100 Rh4CG453100 Rh4DG434300 Rh6AG207600 Rh6BG210300 Rh6CG214100 Rh6DG203400
rosa_wichuraiana	Rw4G036490 Rw6G018100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2892
AasI	GACNNNNNNGTC	1 cut(s)	3601
Acc36I	ACCTGC	4 cut(s)	1192, 1688, 1930, 2771
AccB1I	GGYRCC	2 cut(s)	668, 1495
AccB7I	CCANNNNNTGG	3 cut(s)	53, 1283, 2860
AccI	GTMKAC	1 cut(s)	464
AccII	CGCG	2 cut(s)	320, 542
AclI	AACGTT	1 cut(s)	1056
AclWI	GGATC	7 cut(s)	1067, 1672, 3129, 3426, 3439, 3782, 3795
AcoI	YGGCCR	1 cut(s)	2578
AcsI	RAATTY	5 cut(s)	434, 2320, 2714, 3030, 3964
AcuI	CTGAAG	5 cut(s)	1326, 1604, 2043, 2564, 3956
AcyI	GRCGYC	1 cut(s)	3464
AfaI	GTAC	5 cut(s)	2928, 3040, 3414, 3510, 4053
AflIII	ACRYGT	1 cut(s)	1504
AhlI	ACTAGT	2 cut(s)	854, 1028
AjnI	CCWGG	4 cut(s)	84, 2551, 2575, 4034
AjuI	GAANNNNNNNTTGG	4 cut(s)	2311, 2343, 3758, 3790
Alw21I	GWGCWC	1 cut(s)	3753
Alw26I	GTCTC	3 cut(s)	1199, 1307, 1747
AlwI	GGATC	7 cut(s)	1067, 1672, 3129, 3426, 3439, 3782, 3795
AlwNI	CAGNNNCTG	2 cut(s)	1397, 2330
Ama87I	CYCGRG	1 cut(s)	3606
AoxI	GGCC	8 cut(s)	1524, 2383, 2578, 2988, 3317, 3502, 3531, 3681
ApaI	GGGCCC	1 cut(s)	2992
ApoI	RAATTY	5 cut(s)	434, 2320, 2714, 3030, 3964
Asp700I	GAANNNNTTC	1 cut(s)	2955
AspLEI	GCGC	2 cut(s)	320, 542
AspS9I	GGNCC	8 cut(s)	1525, 2383, 2988, 2989, 3149, 3317, 3503, 3610
AsuC2I	CCSGG	4 cut(s)	478, 3607, 3608, 4070
AvaI	CYCGRG	1 cut(s)	3606
AvaII	GGWCC	2 cut(s)	3149, 3610
BaeGI	GKGCMC	2 cut(s)	673, 2992
BaeI	ACNNNNGTAYC	4 cut(s)	825, 858, 1823, 1856
BalI	TGGCCA	1 cut(s)	2580
BamHI	GGATCC	2 cut(s)	3431, 3787
BanI	GGYRCC	2 cut(s)	668, 1495
BanII	GRGCYC	2 cut(s)	1008, 2992
BauI	CACGAG	2 cut(s)	24, 2582
BbsI	GAAGAC	3 cut(s)	102, 915, 3467
Bbv12I	GWGCWC	1 cut(s)	3753
BbvCI	CCTCAGC	2 cut(s)	372, 2262
BccI	CCATC	3 cut(s)	530, 1277, 2066
BcgI	CGANNNNNNTGC	4 cut(s)	230, 264, 569, 603
BciT130I	CCWGG	4 cut(s)	86, 2553, 2577, 4036
BciVI	GTATCC	1 cut(s)	2432
BcnI	CCSGG	4 cut(s)	478, 3607, 3608, 4070
BcoDI	GTCTC	3 cut(s)	1199, 1307, 1747
BcuI	ACTAGT	2 cut(s)	854, 1028
BfaI	CTAG	9 cut(s)	168, 483, 855, 1029, 1163, 1533, 3321, 3428, 3449
BfmI	CTRYAG	4 cut(s)	954, 1329, 1398, 2193
BfuAI	ACCTGC	4 cut(s)	1192, 1688, 1930, 2771
BfuI	GTATCC	1 cut(s)	2432
Bme1390I	CCNGG	8 cut(s)	86, 478, 2553, 2577, 3607, 3608, 4036, 4070
Bme18I	GGWCC	2 cut(s)	3149, 3610
BmeT110I	CYCGRG	1 cut(s)	3606
BmgT120I	GGNCC	8 cut(s)	1525, 2383, 2988, 2989, 3149, 3317, 3503, 3610
BmrFI	CCNGG	8 cut(s)	86, 478, 2553, 2577, 3607, 3608, 4036, 4070
BmrI	ACTGGG	2 cut(s)	288, 1271
BmuI	ACTGGG	2 cut(s)	288, 1271
BpiI	GAAGAC	3 cut(s)	102, 915, 3467
BplI	GAGNNNNNCTC	2 cut(s)	2824, 2856
BpmI	CTGGAG	2 cut(s)	2475, 4018
Bpu10I	CCTNAGC	3 cut(s)	372, 1953, 2262
BpuEI	CTTGAG	5 cut(s)	368, 1110, 1643, 1994, 3737
BpuMI	CCSGG	4 cut(s)	478, 3607, 3608, 4070
Bsa29I	ATCGAT	1 cut(s)	3084
BsaAI	YACGTR	1 cut(s)	2484
BsaHI	GRCGYC	1 cut(s)	3464
BsaJI	CCNNGG	8 cut(s)	129, 477, 621, 2425, 2575, 2805, 3435, 3606
BsaWI	WCCGGW	1 cut(s)	424
BsaXI	ACNNNNNCTCC	2 cut(s)	3396, 3426
Bse118I	RCCGGY	2 cut(s)	860, 1822
Bse1I	ACTGG	5 cut(s)	283, 333, 1277, 2401, 3534
Bse3DI	GCAATG	6 cut(s)	806, 2796, 3031, 3443, 3822, 3882
BseBI	CCWGG	4 cut(s)	86, 2553, 2577, 4036
BseCI	ATCGAT	1 cut(s)	3084
BseDI	CCNNGG	8 cut(s)	129, 477, 621, 2425, 2575, 2805, 3435, 3606
BseMI	GCAATG	6 cut(s)	806, 2796, 3031, 3443, 3822, 3882
BseNI	ACTGG	5 cut(s)	283, 333, 1277, 2401, 3534
BseSI	GKGCMC	2 cut(s)	673, 2992
BseYI	CCCAGC	2 cut(s)	971, 2103
BsgI	GTGCAG	3 cut(s)	1905, 2219, 3231
Bsh1236I	CGCG	2 cut(s)	320, 542
BshFI	GGCC	8 cut(s)	1526, 2385, 2580, 2990, 3319, 3504, 3533, 3683
BshNI	GGYRCC	2 cut(s)	668, 1495
BshVI	ATCGAT	1 cut(s)	3084
BsiHKAI	GWGCWC	1 cut(s)	3753
BsiHKCI	CYCGRG	1 cut(s)	3606
BsiSI	CCGG	6 cut(s)	425, 477, 861, 1823, 3607, 4069
BslFI	GGGAC	7 cut(s)	1983, 3088, 3162, 3288, 3589, 3623, 3850
BsmAI	GTCTC	3 cut(s)	1199, 1307, 1747
BsmBI	CGTCTC	1 cut(s)	1199
BsmFI	GGGAC	7 cut(s)	1983, 3088, 3162, 3288, 3589, 3623, 3850
BsmI	GAATGC	1 cut(s)	3849
BsnI	GGCC	8 cut(s)	1526, 2385, 2580, 2990, 3319, 3504, 3533, 3683
BsoBI	CYCGRG	1 cut(s)	3606
Bsp120I	GGGCCC	1 cut(s)	2988
Bsp1286I	GDGCHC	4 cut(s)	673, 1008, 2992, 3753
Bsp1407I	TGTACA	2 cut(s)	3412, 3508
Bsp143I	GATC	7 cut(s)	90, 1072, 1677, 3121, 3261, 3431, 3787
BspANI	GGCC	8 cut(s)	1526, 2385, 2580, 2990, 3319, 3504, 3533, 3683
BspDI	ATCGAT	1 cut(s)	3084
BspFNI	CGCG	2 cut(s)	320, 542
BspHI	TCATGA	4 cut(s)	2233, 3112, 3375, 3525
BspMAI	CTGCAG	3 cut(s)	958, 1333, 2197
BspMI	ACCTGC	4 cut(s)	1192, 1688, 1930, 2771
BspPI	GGATC	7 cut(s)	1067, 1672, 3129, 3426, 3439, 3782, 3795
BspT107I	GGYRCC	2 cut(s)	668, 1495
BsrDI	GCAATG	6 cut(s)	806, 2796, 3031, 3443, 3822, 3882
BsrFI	RCCGGY	2 cut(s)	860, 1822
BsrGI	TGTACA	2 cut(s)	3412, 3508
BsrI	ACTGG	5 cut(s)	283, 333, 1277, 2401, 3534
BssAI	RCCGGY	2 cut(s)	860, 1822
BssECI	CCNNGG	8 cut(s)	129, 477, 621, 2425, 2575, 2805, 3435, 3606
BssMI	GATC	7 cut(s)	90, 1072, 1677, 3121, 3261, 3431, 3787
BssNI	GRCGYC	1 cut(s)	3464
BssSI	CACGAG	2 cut(s)	24, 2582
BssT1I	CCWWGG	3 cut(s)	621, 2805, 3435
Bst2BI	CACGAG	2 cut(s)	24, 2582
Bst2UI	CCWGG	4 cut(s)	86, 2553, 2577, 4036
Bst4CI	ACNGT	9 cut(s)	874, 1210, 1318, 1948, 2209, 2921, 3043, 3770, 4080
BstACI	GRCGYC	1 cut(s)	3464
BstAPI	GCANNNNNTGC	1 cut(s)	1883
BstAUI	TGTACA	2 cut(s)	3412, 3508
BstBAI	YACGTR	1 cut(s)	2484
BstC8I	GCNNGC	8 cut(s)	48, 588, 661, 1224, 1443, 2193, 3143, 3295
BstENI	CCTNNNNNAGG	1 cut(s)	171
BstFNI	CGCG	2 cut(s)	320, 542
BstHHI	GCGC	2 cut(s)	320, 542
BstKTI	GATC	7 cut(s)	93, 1075, 1680, 3124, 3264, 3434, 3790
BstMAI	GTCTC	3 cut(s)	1199, 1307, 1747
BstMBI	GATC	7 cut(s)	90, 1072, 1677, 3121, 3261, 3431, 3787
BstNI	CCWGG	4 cut(s)	86, 2553, 2577, 4036
BstNSI	RCATGY	3 cut(s)	1508, 3145, 3287
BstSCI	CCNGG	8 cut(s)	84, 476, 2551, 2575, 3605, 3606, 4034, 4068
BstSFI	CTRYAG	4 cut(s)	954, 1329, 1398, 2193
BstSLI	GKGCMC	2 cut(s)	673, 2992
BstSNI	TACGTA	1 cut(s)	2484
BstUI	CGCG	2 cut(s)	320, 542
BstV2I	GAAGAC	3 cut(s)	102, 915, 3467
BstX2I	RGATCY	4 cut(s)	1072, 1677, 3431, 3787
BstXI	CCANNNNNNTGG	1 cut(s)	3574
BstYI	RGATCY	4 cut(s)	1072, 1677, 3431, 3787
Bsu15I	ATCGAT	1 cut(s)	3084
BsuI	GTATCC	1 cut(s)	2432
BsuRI	GGCC	8 cut(s)	1526, 2385, 2580, 2990, 3319, 3504, 3533, 3683
BsuTUI	ATCGAT	1 cut(s)	3084
BtgZI	GCGATG	2 cut(s)	417, 3339
BtsI	GCAGTG	4 cut(s)	963, 1791, 2202, 3297
BtsIMutI	CAGTG	8 cut(s)	276, 963, 1791, 2202, 2990, 3041, 3297, 3541
BveI	ACCTGC	4 cut(s)	1192, 1688, 1930, 2771
Cac8I	GCNNGC	8 cut(s)	48, 588, 661, 1224, 1443, 2193, 3143, 3295
CaiI	CAGNNNCTG	2 cut(s)	1397, 2330
CciI	TCATGA	4 cut(s)	2233, 3112, 3375, 3525
CfoI	GCGC	2 cut(s)	320, 542
Cfr10I	RCCGGY	2 cut(s)	860, 1822
Cfr13I	GGNCC	8 cut(s)	1525, 2383, 2988, 2989, 3149, 3317, 3503, 3610
Cfr9I	CCCGGG	1 cut(s)	3606
ClaI	ATCGAT	1 cut(s)	3084
CseI	GACGC	2 cut(s)	3472, 3888
CsiI	ACCWGGT	1 cut(s)	84
Csp6I	GTAC	5 cut(s)	2927, 3039, 3413, 3509, 4052
CviQI	GTAC	5 cut(s)	2927, 3039, 3413, 3509, 4052
DpnI	GATC	7 cut(s)	92, 1074, 1679, 3123, 3263, 3433, 3789
DpnII	GATC	7 cut(s)	90, 1072, 1677, 3121, 3261, 3431, 3787
DraI	TTTAAA	1 cut(s)	2137
DrdI	GACNNNNNNGTC	1 cut(s)	3601
DseDI	GACNNNNNNGTC	1 cut(s)	3601
EaeI	YGGCCR	1 cut(s)	2578
EciI	GGCGGA	1 cut(s)	153
Eco105I	TACGTA	1 cut(s)	2484
Eco130I	CCWWGG	3 cut(s)	621, 2805, 3435
Eco147I	AGGCCT	1 cut(s)	3683
Eco24I	GRGCYC	2 cut(s)	1008, 2992
Eco32I	GATATC	1 cut(s)	3340
Eco47I	GGWCC	2 cut(s)	3149, 3610
Eco57I	CTGAAG	5 cut(s)	1326, 1604, 2043, 2564, 3956
Eco88I	CYCGRG	1 cut(s)	3606
EcoNI	CCTNNNNNAGG	1 cut(s)	171
EcoO109I	RGGNCCY	3 cut(s)	1525, 3149, 3610
EcoRI	GAATTC	1 cut(s)	2714
EcoRII	CCWGG	4 cut(s)	84, 2551, 2575, 4034
EcoRV	GATATC	1 cut(s)	3340
EcoT14I	CCWWGG	3 cut(s)	621, 2805, 3435
EcoT22I	ATGCAT	2 cut(s)	892, 2658
EcoT38I	GRGCYC	2 cut(s)	1008, 2992
ErhI	CCWWGG	3 cut(s)	621, 2805, 3435
Esp3I	CGTCTC	1 cut(s)	1199
FalI	AAGNNNNNCTT	8 cut(s)	795, 827, 1512, 1544, 2340, 2372, 4002, 4034
FaqI	GGGAC	7 cut(s)	1983, 3088, 3162, 3288, 3589, 3623, 3850
FauI	CCCGC	3 cut(s)	43, 302, 1734
FblI	GTMKAC	1 cut(s)	464
FriOI	GRGCYC	2 cut(s)	1008, 2992
FspBI	CTAG	9 cut(s)	168, 483, 855, 1029, 1163, 1533, 3321, 3428, 3449
GlaI	GCGC	2 cut(s)	319, 541
GsaI	CCCAGC	2 cut(s)	975, 2107
GsuI	CTGGAG	2 cut(s)	2475, 4018
HaeIII	GGCC	8 cut(s)	1526, 2385, 2580, 2990, 3319, 3504, 3533, 3683
HapII	CCGG	6 cut(s)	425, 477, 861, 1823, 3607, 4069
HgaI	GACGC	2 cut(s)	3472, 3888
HhaI	GCGC	2 cut(s)	320, 542
Hin1I	GRCGYC	1 cut(s)	3464
Hin6I	GCGC	2 cut(s)	318, 540
HinP1I	GCGC	2 cut(s)	318, 540
HincII	GTYRAC	4 cut(s)	465, 2275, 2647, 3180
HindII	GTYRAC	4 cut(s)	465, 2275, 2647, 3180
HindIII	AAGCTT	2 cut(s)	204, 2408
HpaII	CCGG	6 cut(s)	425, 477, 861, 1823, 3607, 4069
Hpy99I	CGWCG	2 cut(s)	104, 116
HpyCH4III	ACNGT	9 cut(s)	874, 1210, 1318, 1948, 2209, 2921, 3043, 3770, 4080
HpyCH4IV	ACGT	3 cut(s)	1056, 2140, 2483
HpySE526I	ACGT	3 cut(s)	1056, 2140, 2483
Hsp92I	GRCGYC	1 cut(s)	3464
HspAI	GCGC	2 cut(s)	318, 540
Kzo9I	GATC	7 cut(s)	90, 1072, 1677, 3121, 3261, 3431, 3787
LmnI	GCTCC	4 cut(s)	427, 1195, 1744, 2863
MabI	ACCWGGT	1 cut(s)	84
MaeI	CTAG	9 cut(s)	168, 483, 855, 1029, 1163, 1533, 3321, 3428, 3449
MaeII	ACGT	3 cut(s)	1056, 2140, 2483
MaeIII	GTNAC	7 cut(s)	26, 518, 1942, 2604, 2682, 3157, 3592
MalI	GATC	7 cut(s)	92, 1074, 1679, 3123, 3263, 3433, 3789
MboI	GATC	7 cut(s)	90, 1072, 1677, 3121, 3261, 3431, 3787
MfeI	CAATTG	5 cut(s)	591, 1446, 3792, 4044, 4083
MflI	RGATCY	4 cut(s)	1072, 1677, 3431, 3787
MhlI	GDGCHC	4 cut(s)	673, 1008, 2992, 3753
MlsI	TGGCCA	1 cut(s)	2580
MluNI	TGGCCA	1 cut(s)	2580
MlyI	GAGTC	6 cut(s)	145, 1749, 2594, 2690, 3611, 3832
MmeI	TCCRAC	1 cut(s)	94
Mox20I	TGGCCA	1 cut(s)	2580
Mph1103I	ATGCAT	2 cut(s)	892, 2658
MroXI	GAANNNNTTC	1 cut(s)	2955
MscI	TGGCCA	1 cut(s)	2580
Msp20I	TGGCCA	1 cut(s)	2580
MspA1I	CMGCKG	4 cut(s)	50, 566, 1484, 3725
MspI	CCGG	6 cut(s)	425, 477, 861, 1823, 3607, 4069
MspR9I	CCNGG	8 cut(s)	86, 478, 2553, 2577, 3607, 3608, 4036, 4070
MunI	CAATTG	5 cut(s)	591, 1446, 3792, 4044, 4083
Mva1269I	GAATGC	1 cut(s)	3849
MvaI	CCWGG	4 cut(s)	86, 2553, 2577, 4036
MvnI	CGCG	2 cut(s)	320, 542
NciI	CCSGG	4 cut(s)	478, 3607, 3608, 4070
NdeII	GATC	7 cut(s)	90, 1072, 1677, 3121, 3261, 3431, 3787
NmuCI	GTSAC	5 cut(s)	26, 518, 2604, 2682, 3592
NsiI	ATGCAT	2 cut(s)	892, 2658
NspI	RCATGY	3 cut(s)	1508, 3145, 3287
PaeI	GCATGC	1 cut(s)	3145
PagI	TCATGA	4 cut(s)	2233, 3112, 3375, 3525
PceI	AGGCCT	1 cut(s)	3683
PciI	ACATGT	1 cut(s)	1504
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 108
PctI	GAATGC	1 cut(s)	3849
PdmI	GAANNNNTTC	1 cut(s)	2955
PflMI	CCANNNNNTGG	3 cut(s)	53, 1283, 2860
PfoI	TCCNGGA	1 cut(s)	4034
PleI	GAGTC	6 cut(s)	144, 1749, 2593, 2689, 3610, 3832
PpsI	GAGTC	6 cut(s)	144, 1749, 2593, 2689, 3610, 3832
Ppu21I	YACGTR	1 cut(s)	2484
PpuMI	RGGWCCY	2 cut(s)	3149, 3610
PscI	ACATGT	1 cut(s)	1504
PsiI	TTATAA	1 cut(s)	2892
Psp1406I	AACGTT	1 cut(s)	1056
Psp5II	RGGWCCY	2 cut(s)	3149, 3610
Psp6I	CCWGG	4 cut(s)	84, 2551, 2575, 4034
PspFI	CCCAGC	2 cut(s)	971, 2103
PspGI	CCWGG	4 cut(s)	84, 2551, 2575, 4034
PspOMI	GGGCCC	1 cut(s)	2988
PspPI	GGNCC	8 cut(s)	1525, 2383, 2988, 2989, 3149, 3317, 3503, 3610
PspPPI	RGGWCCY	2 cut(s)	3149, 3610
PstI	CTGCAG	3 cut(s)	958, 1333, 2197
PstNI	CAGNNNCTG	2 cut(s)	1397, 2330
PsuI	RGATCY	4 cut(s)	1072, 1677, 3431, 3787
PvuII	CAGCTG	2 cut(s)	566, 1484
RsaI	GTAC	5 cut(s)	2928, 3040, 3414, 3510, 4053
RsaNI	GTAC	5 cut(s)	2927, 3039, 3413, 3509, 4052
SalI	GTCGAC	1 cut(s)	463
Sau3AI	GATC	7 cut(s)	90, 1072, 1677, 3121, 3261, 3431, 3787
Sau96I	GGNCC	8 cut(s)	1525, 2383, 2988, 2989, 3149, 3317, 3503, 3610
SchI	GAGTC	6 cut(s)	145, 1749, 2594, 2690, 3611, 3832
ScrFI	CCNGG	8 cut(s)	86, 478, 2553, 2577, 3607, 3608, 4036, 4070
SduI	GDGCHC	4 cut(s)	673, 1008, 2992, 3753
SexAI	ACCWGGT	1 cut(s)	84
SfcI	CTRYAG	4 cut(s)	954, 1329, 1398, 2193
SinI	GGWCC	2 cut(s)	3149, 3610
SmaI	CCCGGG	1 cut(s)	3608
SmlI	CTYRAG	5 cut(s)	347, 1125, 1622, 1973, 3752
SmoI	CTYRAG	5 cut(s)	347, 1125, 1622, 1973, 3752
SnaBI	TACGTA	1 cut(s)	2484
SpeI	ACTAGT	2 cut(s)	854, 1028
SphI	GCATGC	1 cut(s)	3145
SseBI	AGGCCT	1 cut(s)	3683
SspI	AATATT	1 cut(s)	3478
SspMI	CTAG	9 cut(s)	168, 483, 855, 1029, 1163, 1533, 3321, 3428, 3449
StuI	AGGCCT	1 cut(s)	3683
StyD4I	CCNGG	8 cut(s)	84, 476, 2551, 2575, 3605, 3606, 4034, 4068
StyI	CCWWGG	3 cut(s)	621, 2805, 3435
TaaI	ACNGT	9 cut(s)	874, 1210, 1318, 1948, 2209, 2921, 3043, 3770, 4080
TaiI	ACGT	3 cut(s)	1059, 2143, 2486
TaqI	TCGA	7 cut(s)	71, 93, 464, 1178, 3084, 3169, 3690
TatI	WGTACW	3 cut(s)	3412, 3508, 4051
TauI	GCSGC	5 cut(s)	1382, 1385, 1741, 2769, 3725
TscAI	CASTG	8 cut(s)	283, 963, 1791, 2202, 2990, 3041, 3304, 3541
TseFI	GTSAC	5 cut(s)	26, 518, 2604, 2682, 3592
Tsp45I	GTSAC	5 cut(s)	26, 518, 2604, 2682, 3592
TspGWI	ACGGA	3 cut(s)	100, 829, 2495
TspMI	CCCGGG	1 cut(s)	3606
TspRI	CASTG	8 cut(s)	283, 963, 1791, 2202, 2990, 3041, 3304, 3541
Van91I	CCANNNNNTGG	3 cut(s)	53, 1283, 2860
VpaK11BI	GGWCC	2 cut(s)	3149, 3610
XagI	CCTNNNNNAGG	1 cut(s)	171
XapI	RAATTY	5 cut(s)	434, 2320, 2714, 3030, 3964
XceI	RCATGY	3 cut(s)	1508, 3145, 3287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2393
XmaI	CCCGGG	1 cut(s)	3606
XmiI	GTMKAC	1 cut(s)	464
XmnI	GAANNNNTTC	1 cut(s)	2955
XspI	CTAG	9 cut(s)	168, 483, 855, 1029, 1163, 1533, 3321, 3428, 3449
Zsp2I	ATGCAT	2 cut(s)	892, 2658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.