Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002582

Physical Location & Seq

Genomic Coordinates Forward (+)

39623474 .. 39631310

Gene Structure 7837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG210300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3987 bp

ATGGGTCGGAAGAAGCCGACTGCTCGTGACGAAGAGAATCCGCCGCCAGCGGGTGGTGGTGGAGGAAAATCGAAGAAGAAGAACCTGGTGATCGAAGACGACGAGTATTCTGTCGGAACTGAGCTATCCGAGGAGAGTCAAGTCAAGGAAGAGAAGGTTCCTCCTCCGCCTAGTAAAGGGAAGAAGGGCAAGAAGGGGAGTTCTAAAGCTTCTAAGGGAGTGGATGAGGACTTGGACGATGCTGACGAGGATGCAGATGAGGTTCCCCAAGTTGTTTTCACTGGGAAGAAGAAGGGCAAGTCGAAGAAGAGTGGCGGGAGTAGCGCGTTCAGCTCGTCCGGTTTCGGGTTGCTTGAGGATGAGGATGATAAGGATGCTGAGGATGATGAGCAGTCTGGTTTAACAGGGGATGATGAGGAGGAGGATGCTCCGGTGTTGAAATTTTCGGGGAAGAAGAAGCCTTCAAAGTCGACCAAGAAAACCGGGGCTAGTTCGTTTACAGGGTCGGCTTTTGATGCCATTGGGGACGAAGGGGATAGTGATGGCGCGGTTGATGATGAGAGTAATGCAGCTGAAGATCATGAGAATGACGATGAGCCTGCAATTTCTTTTACAGGGAAAAAGAAGGCTTCCAAGGGTGGAAAGAAGGGTGGGAGTGTGTTTGCAGCAGCCAGCTTTAGTGCCCTTGATGATGCGGAGGAGGATAAGGATGAAAAAAACGATGAGGATGACGATATTCCTCAGATTACTTTCTCTGGTAAGAAAAAGAAGTCATCAAAGGCTTCAAAGAAGAGTGGCGGTAATTCTTTTAGCGCAGCATTGCTTGATGAGGAAGATGATGAAGATACTTCCGTTTCCAAACCAACTAGTGCCGGTGATGATACAGTTGAGGATGAAGATGCATCTATGATAACATTCACAGGAAAGAAGAAGTCTTCAAAGAAGAAAGGTAATAGTGTGTTTACTGCAGTGGGTGAAGATGCTGGGGTTGGGAGTGAAATTACAGATGTAGTTGAGCCCAAACAACCAACTACGGGAACTAGTAAAATTGAAGCTGATAATTCTAACGTTAGTAAGAATAAAGATCCAGAACCTTCAAAAAGTAAGAAAAAGAAGAAGAAGAGTGGAAGGACTGCTCAAGAAGAGGATGATTTGGATAAGATTCTTGCAGAGCTAGGTGAGCTTTCATCCAAACCTGCTGCTCCTCAGAAAGAGGAGACGGTGGAGGTTCAGCCTGCTGATTCTCAGAAAGAGGAGAAAGTTGTTGAGGTTCAACCTGATGTGGTTGCCCCAGTTGATGGTTCTGCTGCAAAGGAAGCTGAAGAAGAGACTGTGGAGTCTGCTGCAGCAAAGAAGAAGAAAAAGAAGAAGGAAAAGGAAAAGGAGAAAAAGGCGGCAGCAGCAGCAGCATCTGTAGGTGTCAAGGAGGAAAAACAAGAACAAGCAAAAATTGAGCCAGCAATTGAACCAAAGAAGAAGGAAGTGAAAGGCAAAGCAGCTGAAAAGAAGGTGCCTAAACATGTTAGGGAGATGCAAGAGGCCCTTGCTAGGCGACAGGAAGAAGAAGAGAAGAAGAAAAGGGAAGAAGAGGAGAAACTGAAGAAAGAAGAAGAGGAGAGGCATAAGCAGGAAGAACTTGAGAAGCAAAAGGAGGAGGCAAAGCGGAAGAAAAAGGAGAGGGAAAAGGAGAAGATCCAAGAGTTGAAGAAGGCAGGTTTATATAAAACTCCGAAGCAAAAAGAAGAGGAGAAGCGGCGGGAGCAAAAGAGACTCCAGTTACTTAGGGATTTACCTAATGCAGTGGAGGGTGTGCCTCCTCCTACCACAGACAATGAAAAACCTGCTAAAAGACCCTTGTATCAGAAAAAGAAGTCAAAACCTGCACCGAATCAGGTAAATGGTGCAGCTACTACGAAGCCTGTGGAAGGCACAGAAGGAACAAAAGAAGAAAACCAGCAGGTTACTGTTCTTGAGCTGGATTCTGTGGGACTTGAGAAGGATGAAGAGCAGGAATCAGTTGAAGTAGCAGAAAAGCTATCTGAAGTTTCTGAATCTGTTAAAGAGAATGGATTGGAACAAGAAGAGGATGATGGTGATGATGATGAATGGGATGCAAAGAGCTGGGATGATGATGCTGTTGTTAATCTTTCATTTAAACGTGGGTTTTCTGATGAAGAGGTTGAACCTGTTGTGAATAAAGGGATGAAGCCTGCAGTGCAGAAAACCGTTCCTTCTCAACCAATAAAACCTCATGATGTTGAGAATCAGAAAAAACAAGCTGAGGTGGAAGTTGACAAAGGTAGGAAGAAAGATGCTACTGCAAAGAAAGAAGCACCAAATTCAGATTCTGCCTCTAAACAGAGTGAAGATAATCTTCGCTCTCCCATTTGCTGCATTATGGGCCATGTTGATACTGGTAAAACTAAGCTTCTGGATTGTATCCGAGGCACAAATGTTCAGGAGGGTGAGGCTGGAGGTATTACTCAACAGATTGGTGCTACGTATTTTCCTGCGGATAATATCCGTGAGAGGACTAAAGAACTGAAAGCTGATGCAAAGCTGAAGGTCCCAGGTCTATTGGTCATTGATACCCCTGGCCACGAGTCATTTACTAATTTAAGGTCACGGGGTTCAGGTTTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGCTTAGAGCCTCAAACAATAGAGTCACTCAATCTCTTGAAAATGAGGAATACCGAATTCATTGTTGCATTGAATAAGGTGGACAGGCTCTATGGGTGGAAAACCTGCCGCAACCAGCCAATAGGGAAGGCAATGAAGCAACAATCCAAGGATGTAGTAAATGAGTTCAATATGAGGGTTTCTCAGATTATCACTCAATTCATGGAGCAGGGCTTAAATACTGAATTGTATTATAAGAATAAAGAAATGGGAGAAACATACAGTATTGTACCTACAAGTGCCATTAGTGGTGAAGGGATTCCAGATTTGTTATTACTATTGGTTCAGTGGGCCCAGAAAACTATGGTTGAGAAACTTACTTACAGCAATGAAATTCAGTGTACGGTATTGGAGGTCAAGGTTATCGAAGGTCTTGGGACAACAATTGATGTTGTGTTGGTTAATGGTGTGCTTCATGAAGGGGATCAAATAGTCGTTTGTGGCATGCAGGGACCTATTGTTGCTTCAATTCGAGCTTTGTTGACACCACATCCCATGAAAGAACTTCGTGTCAAGGGAACTTATCAGCACCATAGTCAAATCAAAGCTGCACAAGGTATCAAGATCACAGCACAGGGACTTGAACATGCTATTGCTGGCACTGCTCTATATGTTGTTGGGCCTAGTGATGATTTGGATGATATCAAGGAAACAGCTATGGAAGATATGAAATCAGTCATGAATAGGATTGACAAGAGTGGTGAGGGAGTTTGTGTACAAGCATCTACTCTAGGATCCTTGGAAGCATTGCTAGAGTTTTTGAAGACGCCAGAAGTTAATATTCCTGTTAGTGGTATTAGCATCGGCCCTGTACACAAGAAGGATGTCATGAAGGCCAGTGTAATGCTTGAAAAGAAAAAAGAGTACGCCACTATCTTGGCATTTGATGTTAAAGTGACACCTGAGGCCCGGGACCTTGCAGATGAATTGGGTGTGAAGATTTTTATTGCTGATATAATCTATCACTTATTTGACCAATTTAAGGCCTATATCGACAATCTCAAAGAGGAAAAGAAGAAGGAAGCCGCTGATGAAGCTGTTTTTCCGTGTGTGCTCAAGATTTTACCCAACTGTGTTTTCAACAAGAAGGATCCAATTGTGTTGGGTGTTGATGTTCTTGAAGGCATTGCAAAGGTATGCACTGCAGTTGCTTTACTTTGTCCTCTTCAGTGGGGGATGATGAGGTTTCAGGATTATCATGACATGTCATATATAGGTTTGAAAAAATCCAATTTAATAAATTCCCGGATAGTTTCTATCAGGAGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002181 GO:0002183 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019538 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0033290 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0070993 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 ko03013 map00195 map01100 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 IF-2

Protein Analysis

1328

Amino Acids

145.44

Weight (kDa)

5.21

Isoelectric Point (pI)

40.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	795 - 1004	4.1e-34	Elongation factor Tu GTP binding domain
IF-2	PF11987	1121 - 1233	3.6e-23	Translation-initiation factor 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21160 AT1G76720 AT1G76720 AT1G76810 AT2G27700 AT2G27700
fragaria_vesca	FvH4_2g13940 FvH4_2g13940 FvH4_2g13940 FvH4_4g36100 FvH4_4g36312
malus_domestica	MD05G1023200.v1.1 MD09G1087100.v1.1 MD10G1024100.v1.1
prunus_persica	Prupe.2G099300_v2.0.a1 Prupe.8G027900_v2.0.a1
pyrus_communis	pycom05g01470 pycom09g01240 pycom10g01600
rosa_chinensis	RchiOBHm_Chr4g0445721 RchiOBHm_Chr6g0275701
rosa_laevigata	RLG00000005714 RLG00000013337 RLG00000013444
rosa_multiflora	Rmu_co8469881.1_g000001 Rmu_sc0003637.1_g000011 Rmu_sc0003637.1_g000012 Rmu_sc0007122.1_g000003
rosa_roxburghii	Rroxscaffold_7G00193000
rosa_rugosa	Rorug04G0365200 Rorug06G0095700
rosa_samantha	Rh4AG426100 Rh4CG453100 Rh4DG434300 Rh6AG207600 Rh6BG210300 Rh6CG214100 Rh6DG203400
rosa_wichuraiana	Rw4G036490 Rw6G018100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2910
AasI	GACNNNNNNGTC	1 cut(s)	1336
Acc36I	ACCTGC	6 cut(s)	1204, 1703, 1849, 1888, 1948, 2789
AccB1I	GGYRCC	1 cut(s)	1510
AccB7I	CCANNNNNTGG	2 cut(s)	53, 1298
AccI	GTMKAC	1 cut(s)	470
AccII	CGCG	2 cut(s)	326, 548
AclI	AACGTT	1 cut(s)	1068
AclWI	GGATC	7 cut(s)	1079, 1687, 3147, 3444, 3457, 3800, 3813
AcoI	YGGCCR	1 cut(s)	2596
AcsI	RAATTY	5 cut(s)	440, 2338, 2732, 3048, 3955
AcuI	CTGAAG	6 cut(s)	594, 1341, 1619, 2061, 2582, 3866
AcyI	GRCGYC	1 cut(s)	3482
AfaI	GTAC	5 cut(s)	2946, 3058, 3432, 3528, 3581
AflIII	ACRYGT	2 cut(s)	1519, 3918
AhlI	ACTAGT	2 cut(s)	866, 1040
AjnI	CCWGG	3 cut(s)	84, 2569, 2593
AjuI	GAANNNNNNNTTGG	4 cut(s)	2329, 2361, 3776, 3808
Alw21I	GWGCWC	1 cut(s)	3771
Alw26I	GTCTC	3 cut(s)	1211, 1322, 1762
AlwI	GGATC	7 cut(s)	1079, 1687, 3147, 3444, 3457, 3800, 3813
AlwNI	CAGNNNCTG	2 cut(s)	1412, 2348
Ama87I	CYCGRG	1 cut(s)	3624
AoxI	GGCC	9 cut(s)	1539, 2401, 2596, 3006, 3335, 3520, 3549, 3621, 3699
ApaI	GGGCCC	1 cut(s)	3010
ApoI	RAATTY	5 cut(s)	440, 2338, 2732, 3048, 3955
Asp700I	GAANNNNTTC	1 cut(s)	2973
AspLEI	GCGC	3 cut(s)	326, 548, 815
AsuC2I	CCSGG	4 cut(s)	484, 3625, 3626, 3961
AsuHPI	GGTGA	8 cut(s)	100, 887, 986, 1190, 2105, 2477, 2978, 3428
AvaI	CYCGRG	1 cut(s)	3624
AvaII	GGWCC	3 cut(s)	2566, 3167, 3628
AxyI	CCTNAGG	1 cut(s)	3618
BaeGI	GKGCMC	2 cut(s)	685, 3010
BaeI	ACNNNNGTAYC	4 cut(s)	837, 870, 1841, 1874
BalI	TGGCCA	1 cut(s)	2598
BamHI	GGATCC	2 cut(s)	3449, 3805
BanI	GGYRCC	1 cut(s)	1510
BanII	GRGCYC	2 cut(s)	1020, 3010
BauI	CACGAG	2 cut(s)	24, 2600
BbsI	GAAGAC	3 cut(s)	102, 927, 3485
Bbv12I	GWGCWC	1 cut(s)	3771
BbvCI	CCTCAGC	2 cut(s)	378, 2280
BccI	CCATC	3 cut(s)	536, 1292, 2084
BcgI	CGANNNNNNTGC	2 cut(s)	581, 615
BciT130I	CCWGG	3 cut(s)	86, 2571, 2595
BciVI	GTATCC	1 cut(s)	2450
BcnI	CCSGG	4 cut(s)	484, 3625, 3626, 3961
BcoDI	GTCTC	3 cut(s)	1211, 1322, 1762
BcuI	ACTAGT	2 cut(s)	866, 1040
BfaI	CTAG	9 cut(s)	171, 489, 867, 1041, 1175, 1548, 3339, 3446, 3467
BfmI	CTRYAG	5 cut(s)	966, 1344, 1413, 2211, 3858
BfuAI	ACCTGC	6 cut(s)	1204, 1703, 1849, 1888, 1948, 2789
BfuI	GTATCC	1 cut(s)	2450
Bme1390I	CCNGG	7 cut(s)	86, 484, 2571, 2595, 3625, 3626, 3961
Bme18I	GGWCC	3 cut(s)	2566, 3167, 3628
BmeT110I	CYCGRG	1 cut(s)	3624
BmiI	GGNNCC	9 cut(s)	159, 264, 1512, 2568, 3008, 3168, 3451, 3629, 3807
BmrFI	CCNGG	7 cut(s)	86, 484, 2571, 2595, 3625, 3626, 3961
BmrI	ACTGGG	2 cut(s)	291, 1286
BmuI	ACTGGG	2 cut(s)	291, 1286
BpiI	GAAGAC	3 cut(s)	102, 927, 3485
BplI	GAGNNNNNCTC	2 cut(s)	2842, 2874
BpmI	CTGGAG	2 cut(s)	1757, 2493
Bpu10I	CCTNAGC	2 cut(s)	378, 2280
BpuEI	CTTGAG	6 cut(s)	374, 1122, 1658, 1991, 2012, 3755
BpuMI	CCSGG	4 cut(s)	484, 3625, 3626, 3961
BsaAI	YACGTR	1 cut(s)	2502
BsaHI	GRCGYC	1 cut(s)	3482
BsaJI	CCNNGG	9 cut(s)	129, 483, 633, 2443, 2569, 2593, 2823, 3453, 3624
BsaWI	WCCGGW	2 cut(s)	338, 430
BsaXI	ACNNNNNCTCC	2 cut(s)	3414, 3444
Bse118I	RCCGGY	1 cut(s)	872
Bse1I	ACTGG	5 cut(s)	286, 1292, 1774, 2419, 3552
Bse21I	CCTNAGG	1 cut(s)	3618
Bse3DI	GCAATG	5 cut(s)	818, 2814, 3049, 3461, 3840
BseBI	CCWGG	3 cut(s)	86, 2571, 2595
BseDI	CCNNGG	9 cut(s)	129, 483, 633, 2443, 2569, 2593, 2823, 3453, 3624
BseMI	GCAATG	5 cut(s)	818, 2814, 3049, 3461, 3840
BseMII	CTCAG	8 cut(s)	111, 369, 755, 1220, 1259, 2271, 2873, 3609
BseNI	ACTGG	5 cut(s)	286, 1292, 1774, 2419, 3552
BseSI	GKGCMC	2 cut(s)	685, 3010
BseYI	CCCAGC	2 cut(s)	983, 2121
BsgI	GTGCAG	4 cut(s)	1866, 1923, 2237, 3249
Bsh1236I	CGCG	2 cut(s)	326, 548
BshFI	GGCC	9 cut(s)	1541, 2403, 2598, 3008, 3337, 3522, 3551, 3623, 3701
BshNI	GGYRCC	1 cut(s)	1510
BsiHKAI	GWGCWC	1 cut(s)	3771
BsiHKCI	CYCGRG	1 cut(s)	3624
BsiSI	CCGG	6 cut(s)	339, 431, 483, 873, 3625, 3961
BslFI	GGGAC	7 cut(s)	539, 2001, 2552, 3106, 3180, 3306, 3641
BsmAI	GTCTC	3 cut(s)	1211, 1322, 1762
BsmBI	CGTCTC	1 cut(s)	1211
BsmFI	GGGAC	7 cut(s)	539, 2001, 2552, 3106, 3180, 3306, 3641
BsnI	GGCC	9 cut(s)	1541, 2403, 2598, 3008, 3337, 3522, 3551, 3623, 3701
BsoBI	CYCGRG	1 cut(s)	3624
Bsp120I	GGGCCC	1 cut(s)	3006
Bsp1286I	GDGCHC	4 cut(s)	685, 1020, 3010, 3771
Bsp1407I	TGTACA	2 cut(s)	3430, 3526
Bsp143I	GATC	8 cut(s)	90, 577, 1084, 1692, 3139, 3279, 3449, 3805
BspANI	GGCC	9 cut(s)	1541, 2403, 2598, 3008, 3337, 3522, 3551, 3623, 3701
BspCNI	CTCAG	8 cut(s)	112, 370, 754, 1219, 1258, 2272, 2872, 3610
BspFNI	CGCG	2 cut(s)	326, 548
BspHI	TCATGA	6 cut(s)	580, 2251, 3130, 3393, 3543, 3913
BspLI	GGNNCC	9 cut(s)	159, 264, 1512, 2568, 3008, 3168, 3451, 3629, 3807
BspMAI	CTGCAG	4 cut(s)	970, 1348, 2215, 3862
BspMI	ACCTGC	6 cut(s)	1204, 1703, 1849, 1888, 1948, 2789
BspPI	GGATC	7 cut(s)	1079, 1687, 3147, 3444, 3457, 3800, 3813
BspQI	GCTCTTC	1 cut(s)	1998
BspT107I	GGYRCC	1 cut(s)	1510
BsrDI	GCAATG	5 cut(s)	818, 2814, 3049, 3461, 3840
BsrFI	RCCGGY	1 cut(s)	872
BsrGI	TGTACA	2 cut(s)	3430, 3526
BsrI	ACTGG	5 cut(s)	286, 1292, 1774, 2419, 3552
BssAI	RCCGGY	1 cut(s)	872
BssECI	CCNNGG	9 cut(s)	129, 483, 633, 2443, 2569, 2593, 2823, 3453, 3624
BssMI	GATC	8 cut(s)	90, 577, 1084, 1692, 3139, 3279, 3449, 3805
BssNI	GRCGYC	1 cut(s)	3482
BssSI	CACGAG	2 cut(s)	24, 2600
BssT1I	CCWWGG	3 cut(s)	633, 2823, 3453
Bst2BI	CACGAG	2 cut(s)	24, 2600
Bst2UI	CCWGG	3 cut(s)	86, 2571, 2595
Bst4CI	ACNGT	8 cut(s)	886, 1222, 1333, 1966, 2227, 2939, 3061, 3788
BstACI	GRCGYC	1 cut(s)	3482
BstAUI	TGTACA	2 cut(s)	3430, 3526
BstBAI	YACGTR	1 cut(s)	2502
BstC8I	GCNNGC	8 cut(s)	48, 600, 673, 1236, 1458, 2211, 3161, 3313
BstENI	CCTNNNNNAGG	2 cut(s)	174, 1923
BstFNI	CGCG	2 cut(s)	326, 548
BstHHI	GCGC	3 cut(s)	326, 548, 815
BstKTI	GATC	8 cut(s)	93, 580, 1087, 1695, 3142, 3282, 3452, 3808
BstMAI	GTCTC	3 cut(s)	1211, 1322, 1762
BstMBI	GATC	8 cut(s)	90, 577, 1084, 1692, 3139, 3279, 3449, 3805
BstNI	CCWGG	3 cut(s)	86, 2571, 2595
BstNSI	RCATGY	4 cut(s)	1523, 3163, 3305, 3922
BstSCI	CCNGG	7 cut(s)	84, 482, 2569, 2593, 3623, 3624, 3959
BstSFI	CTRYAG	5 cut(s)	966, 1344, 1413, 2211, 3858
BstSLI	GKGCMC	2 cut(s)	685, 3010
BstSNI	TACGTA	1 cut(s)	2502
BstUI	CGCG	2 cut(s)	326, 548
BstV2I	GAAGAC	3 cut(s)	102, 927, 3485
BstX2I	RGATCY	4 cut(s)	1084, 1692, 3449, 3805
BstXI	CCANNNNNNTGG	1 cut(s)	3592
BstYI	RGATCY	4 cut(s)	1084, 1692, 3449, 3805
Bsu36I	CCTNAGG	1 cut(s)	3618
BsuI	GTATCC	1 cut(s)	2450
BsuRI	GGCC	9 cut(s)	1541, 2403, 2598, 3008, 3337, 3522, 3551, 3623, 3701
BtsI	GCAGTG	5 cut(s)	975, 1806, 2220, 3315, 3855
BveI	ACCTGC	6 cut(s)	1204, 1703, 1849, 1888, 1948, 2789
Cac8I	GCNNGC	8 cut(s)	48, 600, 673, 1236, 1458, 2211, 3161, 3313
CaiI	CAGNNNCTG	2 cut(s)	1412, 2348
CciI	TCATGA	6 cut(s)	580, 2251, 3130, 3393, 3543, 3913
CfoI	GCGC	3 cut(s)	326, 548, 815
Cfr10I	RCCGGY	1 cut(s)	872
Cfr9I	CCCGGG	1 cut(s)	3624
CseI	GACGC	1 cut(s)	3490
CsiI	ACCWGGT	1 cut(s)	84
Csp6I	GTAC	5 cut(s)	2945, 3057, 3431, 3527, 3580
CviQI	GTAC	5 cut(s)	2945, 3057, 3431, 3527, 3580
DpnI	GATC	8 cut(s)	92, 579, 1086, 1694, 3141, 3281, 3451, 3807
DpnII	GATC	8 cut(s)	90, 577, 1084, 1692, 3139, 3279, 3449, 3805
DraI	TTTAAA	1 cut(s)	2155
DrdI	GACNNNNNNGTC	1 cut(s)	1336
DseDI	GACNNNNNNGTC	1 cut(s)	1336
EaeI	YGGCCR	1 cut(s)	2596
EciI	GGCGGA	2 cut(s)	30, 156
Eco105I	TACGTA	1 cut(s)	2502
Eco130I	CCWWGG	3 cut(s)	633, 2823, 3453
Eco147I	AGGCCT	1 cut(s)	3701
Eco24I	GRGCYC	2 cut(s)	1020, 3010
Eco32I	GATATC	1 cut(s)	3358
Eco47I	GGWCC	3 cut(s)	2566, 3167, 3628
Eco57I	CTGAAG	6 cut(s)	594, 1341, 1619, 2061, 2582, 3866
Eco81I	CCTNAGG	1 cut(s)	3618
Eco88I	CYCGRG	1 cut(s)	3624
EcoNI	CCTNNNNNAGG	2 cut(s)	174, 1923
EcoO109I	RGGNCCY	4 cut(s)	1540, 2566, 3167, 3628
EcoRI	GAATTC	1 cut(s)	2732
EcoRII	CCWGG	3 cut(s)	84, 2569, 2593
EcoRV	GATATC	1 cut(s)	3358
EcoT14I	CCWWGG	3 cut(s)	633, 2823, 3453
EcoT22I	ATGCAT	2 cut(s)	904, 2676
EcoT38I	GRGCYC	2 cut(s)	1020, 3010
ErhI	CCWWGG	3 cut(s)	633, 2823, 3453
Esp3I	CGTCTC	1 cut(s)	1211
FalI	AAGNNNNNCTT	4 cut(s)	1527, 1559, 2358, 2390
FaqI	GGGAC	7 cut(s)	539, 2001, 2552, 3106, 3180, 3306, 3641
FauI	CCCGC	3 cut(s)	43, 308, 1749
FblI	GTMKAC	1 cut(s)	470
FriOI	GRGCYC	2 cut(s)	1020, 3010
FspBI	CTAG	9 cut(s)	171, 489, 867, 1041, 1175, 1548, 3339, 3446, 3467
GlaI	GCGC	3 cut(s)	325, 547, 814
GsaI	CCCAGC	2 cut(s)	987, 2125
GsuI	CTGGAG	2 cut(s)	1757, 2493
HaeIII	GGCC	9 cut(s)	1541, 2403, 2598, 3008, 3337, 3522, 3551, 3623, 3701
HapII	CCGG	6 cut(s)	339, 431, 483, 873, 3625, 3961
HgaI	GACGC	1 cut(s)	3490
HhaI	GCGC	3 cut(s)	326, 548, 815
Hin1I	GRCGYC	1 cut(s)	3482
Hin6I	GCGC	3 cut(s)	324, 546, 813
HinP1I	GCGC	3 cut(s)	324, 546, 813
HincII	GTYRAC	4 cut(s)	471, 2293, 2665, 3198
HindII	GTYRAC	4 cut(s)	471, 2293, 2665, 3198
HindIII	AAGCTT	2 cut(s)	207, 2426
HpaII	CCGG	6 cut(s)	339, 431, 483, 873, 3625, 3961
HphI	GGTGA	8 cut(s)	100, 887, 986, 1190, 2105, 2477, 2978, 3428
Hpy99I	CGWCG	1 cut(s)	104
HpyCH4III	ACNGT	8 cut(s)	886, 1222, 1333, 1966, 2227, 2939, 3061, 3788
HpyCH4IV	ACGT	3 cut(s)	1068, 2158, 2501
HpySE526I	ACGT	3 cut(s)	1068, 2158, 2501
Hsp92I	GRCGYC	1 cut(s)	3482
HspAI	GCGC	3 cut(s)	324, 546, 813
Kzo9I	GATC	8 cut(s)	90, 577, 1084, 1692, 3139, 3279, 3449, 3805
LguI	GCTCTTC	1 cut(s)	1998
LmnI	GCTCC	4 cut(s)	433, 1207, 1759, 2881
MabI	ACCWGGT	1 cut(s)	84
MaeI	CTAG	9 cut(s)	171, 489, 867, 1041, 1175, 1548, 3339, 3446, 3467
MaeII	ACGT	3 cut(s)	1068, 2158, 2501
MaeIII	GTNAC	6 cut(s)	26, 1776, 1960, 2622, 2700, 3610
MalI	GATC	8 cut(s)	92, 579, 1086, 1694, 3141, 3281, 3451, 3807
MboI	GATC	8 cut(s)	90, 577, 1084, 1692, 3139, 3279, 3449, 3805
MfeI	CAATTG	3 cut(s)	1461, 3099, 3810
MflI	RGATCY	4 cut(s)	1084, 1692, 3449, 3805
MhlI	GDGCHC	4 cut(s)	685, 1020, 3010, 3771
MlsI	TGGCCA	1 cut(s)	2598
MluNI	TGGCCA	1 cut(s)	2598
MlyI	GAGTC	5 cut(s)	145, 1346, 1764, 2612, 2708
MmeI	TCCRAC	1 cut(s)	94
Mox20I	TGGCCA	1 cut(s)	2598
Mph1103I	ATGCAT	2 cut(s)	904, 2676
MroXI	GAANNNNTTC	1 cut(s)	2973
MscI	TGGCCA	1 cut(s)	2598
MslI	CAYNNNNRTG	1 cut(s)	585
Msp20I	TGGCCA	1 cut(s)	2598
MspA1I	CMGCKG	4 cut(s)	50, 572, 1499, 3743
MspI	CCGG	6 cut(s)	339, 431, 483, 873, 3625, 3961
MspR9I	CCNGG	7 cut(s)	86, 484, 2571, 2595, 3625, 3626, 3961
MunI	CAATTG	3 cut(s)	1461, 3099, 3810
MvaI	CCWGG	3 cut(s)	86, 2571, 2595
MvnI	CGCG	2 cut(s)	326, 548
NciI	CCSGG	4 cut(s)	484, 3625, 3626, 3961
NdeII	GATC	8 cut(s)	90, 577, 1084, 1692, 3139, 3279, 3449, 3805
NlaIV	GGNNCC	9 cut(s)	159, 264, 1512, 2568, 3008, 3168, 3451, 3629, 3807
NmuCI	GTSAC	4 cut(s)	26, 2622, 2700, 3610
NsiI	ATGCAT	2 cut(s)	904, 2676
NspI	RCATGY	4 cut(s)	1523, 3163, 3305, 3922
PaeI	GCATGC	1 cut(s)	3163
PagI	TCATGA	6 cut(s)	580, 2251, 3130, 3393, 3543, 3913
PceI	AGGCCT	1 cut(s)	3701
PciI	ACATGT	2 cut(s)	1519, 3918
PciSI	GCTCTTC	1 cut(s)	1998
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 243
PdmI	GAANNNNTTC	1 cut(s)	2973
PflMI	CCANNNNNTGG	2 cut(s)	53, 1298
PfoI	TCCNGGA	1 cut(s)	3959
PleI	GAGTC	5 cut(s)	144, 1345, 1764, 2611, 2707
PpsI	GAGTC	5 cut(s)	144, 1345, 1764, 2611, 2707
Ppu21I	YACGTR	1 cut(s)	2502
PpuMI	RGGWCCY	3 cut(s)	2566, 3167, 3628
PscI	ACATGT	2 cut(s)	1519, 3918
PsiI	TTATAA	1 cut(s)	2910
Psp1406I	AACGTT	1 cut(s)	1068
Psp5II	RGGWCCY	3 cut(s)	2566, 3167, 3628
Psp6I	CCWGG	3 cut(s)	84, 2569, 2593
PspFI	CCCAGC	2 cut(s)	983, 2121
PspGI	CCWGG	3 cut(s)	84, 2569, 2593
PspN4I	GGNNCC	9 cut(s)	159, 264, 1512, 2568, 3008, 3168, 3451, 3629, 3807
PspOMI	GGGCCC	1 cut(s)	3006
PspPPI	RGGWCCY	3 cut(s)	2566, 3167, 3628
PstI	CTGCAG	4 cut(s)	970, 1348, 2215, 3862
PstNI	CAGNNNCTG	2 cut(s)	1412, 2348
PsuI	RGATCY	4 cut(s)	1084, 1692, 3449, 3805
PvuII	CAGCTG	2 cut(s)	572, 1499
RsaI	GTAC	5 cut(s)	2946, 3058, 3432, 3528, 3581
RsaNI	GTAC	5 cut(s)	2945, 3057, 3431, 3527, 3580
RseI	CAYNNNNRTG	1 cut(s)	585
SalI	GTCGAC	1 cut(s)	469
SapI	GCTCTTC	1 cut(s)	1998
Sau3AI	GATC	8 cut(s)	90, 577, 1084, 1692, 3139, 3279, 3449, 3805
SchI	GAGTC	5 cut(s)	145, 1346, 1764, 2612, 2708
ScrFI	CCNGG	7 cut(s)	86, 484, 2571, 2595, 3625, 3626, 3961
SduI	GDGCHC	4 cut(s)	685, 1020, 3010, 3771
SexAI	ACCWGGT	1 cut(s)	84
SfcI	CTRYAG	5 cut(s)	966, 1344, 1413, 2211, 3858
SinI	GGWCC	3 cut(s)	2566, 3167, 3628
SmaI	CCCGGG	1 cut(s)	3626
SmiMI	CAYNNNNRTG	1 cut(s)	585
SmlI	CTYRAG	6 cut(s)	353, 1137, 1637, 1970, 1991, 3770
SmoI	CTYRAG	6 cut(s)	353, 1137, 1637, 1970, 1991, 3770
SnaBI	TACGTA	1 cut(s)	2502
SpeI	ACTAGT	2 cut(s)	866, 1040
SphI	GCATGC	1 cut(s)	3163
SseBI	AGGCCT	1 cut(s)	3701
SspI	AATATT	1 cut(s)	3496
SspMI	CTAG	9 cut(s)	171, 489, 867, 1041, 1175, 1548, 3339, 3446, 3467
StuI	AGGCCT	1 cut(s)	3701
StyD4I	CCNGG	7 cut(s)	84, 482, 2569, 2593, 3623, 3624, 3959
StyI	CCWWGG	3 cut(s)	633, 2823, 3453
TaaI	ACNGT	8 cut(s)	886, 1222, 1333, 1966, 2227, 2939, 3061, 3788
TaiI	ACGT	3 cut(s)	1071, 2161, 2504
TaqI	TCGA	7 cut(s)	71, 93, 302, 470, 3081, 3187, 3708
TatI	WGTACW	2 cut(s)	3430, 3526
TauI	GCSGC	5 cut(s)	46, 1397, 1756, 2787, 3743
TseFI	GTSAC	4 cut(s)	26, 2622, 2700, 3610
Tsp45I	GTSAC	4 cut(s)	26, 2622, 2700, 3610
TspGWI	ACGGA	3 cut(s)	841, 2513, 3750
TspMI	CCCGGG	1 cut(s)	3624
Van91I	CCANNNNNTGG	2 cut(s)	53, 1298
VpaK11BI	GGWCC	3 cut(s)	2566, 3167, 3628
XagI	CCTNNNNNAGG	2 cut(s)	174, 1923
XapI	RAATTY	5 cut(s)	440, 2338, 2732, 3048, 3955
XceI	RCATGY	4 cut(s)	1523, 3163, 3305, 3922
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2411
XmaI	CCCGGG	1 cut(s)	3624
XmiI	GTMKAC	1 cut(s)	470
XmnI	GAANNNNTTC	1 cut(s)	2973
XspI	CTAG	9 cut(s)	171, 489, 867, 1041, 1175, 1548, 3339, 3446, 3467
Zsp2I	ATGCAT	2 cut(s)	904, 2676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.