Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8469881.1

Orthogroup ID

OG0002582

Physical Location & Seq

Genomic Coordinates Reverse (-)

202 .. 1892

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8469881.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atgcagggacttgaacatgctattgctggcactgctctatatgttgttgggcctagcgatgacttggatgatgtcaaggaaacagctatggaagatatgaaatcagtcatgaataggattgacaagagtggtgagggagtttgtgtacaagcatctactctaggatccttggaagcattgctagagtttttgaagacgccagaagttaatattcctgttagtggtattagcatcggccctgtacacaagaaggatgtcatgaaggccagtgtaatgcttgaaaagaaaaaagagtacgccactatcttggcatttgatgttaaagtgacacctgaggcccgggaccttgcagatgaattgggtgtgaagatttttattgctgatataatctatcacttatttgaccaatttaaggcctatatcgacaatctcaaagaggaaaagaagaaggaagccgctgatgaagctgtttttccgtgtgtgctcaagattttacccaactgtgttttcaacaagaaggatccaattgtgttgggtgttgatgttcttgaaggcattgcaaaggtagggactccaatttgcattcctcagagagattttattgatattggacgcattgcatccattgagaataaccacaaacctgtagatatagcgaaaaaggggctgaaggtggctatcaagatagtcggcacaaattctgatgagcagcaaaagatgtatggtaggcattttgaaattgaagatgagcttgtcagccatatctccaggaggtcaattgatgtacttaaaacaagctaccgggatgaactgtcaattgacgagtggaagctggttgtgaaattgaagaaactttttgagataccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002181 GO:0002183 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019538 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0033290 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0070993 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 ko03013 map00195 map01100 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 IF-2

Protein Analysis

289

Amino Acids

32.19

Weight (kDa)

5.42

Isoelectric Point (pI)

23.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21160 AT1G76720 AT1G76720 AT1G76810 AT2G27700 AT2G27700
fragaria_vesca	FvH4_2g13940 FvH4_2g13940 FvH4_2g13940 FvH4_4g36100 FvH4_4g36312
malus_domestica	MD05G1023200.v1.1 MD09G1087100.v1.1 MD10G1024100.v1.1
prunus_persica	Prupe.2G099300_v2.0.a1 Prupe.8G027900_v2.0.a1
pyrus_communis	pycom05g01470 pycom09g01240 pycom10g01600
rosa_chinensis	RchiOBHm_Chr4g0445721 RchiOBHm_Chr6g0275701
rosa_laevigata	RLG00000005714 RLG00000013337 RLG00000013444
rosa_multiflora	Rmu_co8469881.1_g000001 Rmu_sc0003637.1_g000011 Rmu_sc0003637.1_g000012 Rmu_sc0007122.1_g000003
rosa_roxburghii	Rroxscaffold_7G00193000
rosa_rugosa	Rorug04G0365200 Rorug06G0095700
rosa_samantha	Rh4AG426100 Rh4CG453100 Rh4DG434300 Rh6AG207600 Rh6BG210300 Rh6CG214100 Rh6DG203400
rosa_wichuraiana	Rw4G036490 Rw6G018100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	456
AclWI	GGATC	4 cut(s)	159, 172, 515, 528
AcsI	RAATTY	1 cut(s)	697
AcuI	CTGAAG	1 cut(s)	689
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	4 cut(s)	147, 243, 296, 786
AfiI	CCNNNNNNNGG	2 cut(s)	221, 412
AgsI	TTSAA	8 cut(s)	14, 193, 281, 511, 551, 737, 743, 847
AjnI	CCWGG	1 cut(s)	767
AjuI	GAANNNNNNNTTGG	2 cut(s)	491, 523
AluBI	AGCT	5 cut(s)	86, 467, 751, 798, 832
AluI	AGCT	5 cut(s)	86, 467, 751, 798, 832
Alw21I	GWGCWC	1 cut(s)	486
AlwI	GGATC	4 cut(s)	159, 172, 515, 528
Ama87I	CYCGRG	1 cut(s)	339
AoxI	GGCC	5 cut(s)	50, 235, 264, 336, 414
ApeKI	GCWGC	1 cut(s)	709
ApoI	RAATTY	1 cut(s)	697
AspS9I	GGNCC	4 cut(s)	50, 236, 337, 343
AsuC2I	CCSGG	3 cut(s)	340, 341, 803
AsuHPI	GGTGA	1 cut(s)	143
AvaI	CYCGRG	1 cut(s)	339
AvaII	GGWCC	1 cut(s)	343
AxyI	CCTNAGG	1 cut(s)	333
BamHI	GGATCC	2 cut(s)	164, 520
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	1 cut(s)	721
BciT130I	CCWGG	1 cut(s)	769
BcnI	CCSGG	3 cut(s)	340, 341, 803
BfaI	CTAG	3 cut(s)	54, 161, 182
BfmI	CTRYAG	1 cut(s)	645
BisI	GCNGC	2 cut(s)	456, 710
BlsI	GCNGC	2 cut(s)	457, 711
Bme1390I	CCNGG	4 cut(s)	340, 341, 769, 803
Bme18I	GGWCC	1 cut(s)	343
BmeT110I	CYCGRG	1 cut(s)	339
BmgT120I	GGNCC	4 cut(s)	50, 236, 337, 343
BmiI	GGNNCC	3 cut(s)	166, 344, 522
BmrFI	CCNGG	4 cut(s)	340, 341, 769, 803
BmsI	GCATC	3 cut(s)	161, 240, 629
BpiI	GAAGAC	1 cut(s)	200
BpmI	CTGGAG	1 cut(s)	751
BpuEI	CTTGAG	1 cut(s)	470
BpuMI	CCSGG	3 cut(s)	340, 341, 803
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	168, 339
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 412
Bse1I	ACTGG	1 cut(s)	267
Bse21I	CCTNAGG	1 cut(s)	333
Bse3DI	GCAATG	3 cut(s)	176, 555, 615
BseBI	CCWGG	1 cut(s)	769
BseDI	CCNNGG	2 cut(s)	168, 339
BseGI	GGATG	4 cut(s)	73, 259, 620, 811
BseLI	CCNNNNNNNGG	2 cut(s)	221, 412
BseMI	GCAATG	3 cut(s)	176, 555, 615
BseMII	CTCAG	2 cut(s)	324, 602
BseNI	ACTGG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	721
BshFI	GGCC	5 cut(s)	52, 237, 266, 338, 416
BsiHKAI	GWGCWC	1 cut(s)	486
BsiHKCI	CYCGRG	1 cut(s)	339
BsiSI	CCGG	2 cut(s)	340, 802
BslFI	GGGAC	3 cut(s)	21, 356, 583
BslI	CCNNNNNNNGG	2 cut(s)	221, 412
BsmFI	GGGAC	3 cut(s)	21, 356, 583
BsmI	GAATGC	1 cut(s)	582
BsnI	GGCC	5 cut(s)	52, 237, 266, 338, 416
BsoBI	CYCGRG	1 cut(s)	339
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp1407I	TGTACA	2 cut(s)	145, 241
Bsp143I	GATC	2 cut(s)	164, 520
BspACI	CCGC	1 cut(s)	456
BspANI	GGCC	5 cut(s)	52, 237, 266, 338, 416
BspCNI	CTCAG	2 cut(s)	325, 601
BspHI	TCATGA	2 cut(s)	108, 258
BspLI	GGNNCC	3 cut(s)	166, 344, 522
BspPI	GGATC	4 cut(s)	159, 172, 515, 528
BsrDI	GCAATG	3 cut(s)	176, 555, 615
BsrGI	TGTACA	2 cut(s)	145, 241
BsrI	ACTGG	1 cut(s)	267
BssECI	CCNNGG	2 cut(s)	168, 339
BssMI	GATC	2 cut(s)	164, 520
BssNI	GRCGYC	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	769
Bst4CI	ACNGT	2 cut(s)	503, 813
BstACI	GRCGYC	1 cut(s)	197
BstAUI	TGTACA	2 cut(s)	145, 241
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	2 cut(s)	333, 588
BstF5I	GGATG	4 cut(s)	73, 259, 620, 811
BstKTI	GATC	2 cut(s)	167, 523
BstMBI	GATC	2 cut(s)	164, 520
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 464
BstNI	CCWGG	1 cut(s)	769
BstNSI	RCATGY	1 cut(s)	20
BstSCI	CCNGG	4 cut(s)	338, 339, 767, 801
BstSFI	CTRYAG	1 cut(s)	645
BstV1I	GCAGC	1 cut(s)	721
BstV2I	GAAGAC	1 cut(s)	200
BstX2I	RGATCY	2 cut(s)	164, 520
BstXI	CCANNNNNNTGG	1 cut(s)	307
BstYI	RGATCY	2 cut(s)	164, 520
Bsu36I	CCTNAGG	1 cut(s)	333
BsuRI	GGCC	5 cut(s)	52, 237, 266, 338, 416
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	4 cut(s)	73, 259, 620, 811
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	2 cut(s)	30, 274
Cac8I	GCNNGC	1 cut(s)	28
CciI	TCATGA	2 cut(s)	108, 258
Cfr13I	GGNCC	4 cut(s)	50, 236, 337, 343
Cfr9I	CCCGGG	1 cut(s)	339
CseI	GACGC	2 cut(s)	205, 621
Csp6I	GTAC	4 cut(s)	146, 242, 295, 785
CviAII	CATG	4 cut(s)	17, 109, 259, 867
CviQI	GTAC	4 cut(s)	146, 242, 295, 785
DdeI	CTNAG	2 cut(s)	333, 588
DpnI	GATC	2 cut(s)	166, 522
DpnII	GATC	2 cut(s)	164, 520
Eco130I	CCWWGG	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	416
Eco47I	GGWCC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	689
Eco81I	CCTNAGG	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	767
EcoT14I	CCWWGG	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	4 cut(s)	20, 112, 262, 870
FalI	AAGNNNNNCTT	2 cut(s)	735, 767
FaqI	GGGAC	3 cut(s)	21, 356, 583
FatI	CATG	4 cut(s)	16, 108, 258, 866
Fnu4HI	GCNGC	2 cut(s)	456, 710
FokI	GGATG	4 cut(s)	80, 266, 607, 818
Fsp4HI	GCNGC	2 cut(s)	456, 710
FspBI	CTAG	3 cut(s)	54, 161, 182
GluI	GCNGC	2 cut(s)	456, 710
GsuI	CTGGAG	1 cut(s)	751
HaeIII	GGCC	5 cut(s)	52, 237, 266, 338, 416
HapII	CCGG	2 cut(s)	340, 802
HgaI	GACGC	2 cut(s)	205, 621
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	4 cut(s)	20, 112, 262, 870
HinfI	GANTC	1 cut(s)	571
HpaII	CCGG	2 cut(s)	340, 802
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	2 cut(s)	146, 244
Hpy188I	TCNGA	2 cut(s)	591, 703
Hpy188III	TCNNGA	5 cut(s)	109, 259, 487, 548, 682
Hpy8I	GTNNAC	2 cut(s)	146, 244
HpyAV	CCTTC	6 cut(s)	244, 256, 442, 511, 545, 664
HpyCH4III	ACNGT	2 cut(s)	503, 813
HpyCH4V	TGCA	5 cut(s)	4, 350, 560, 582, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 464
HpyF3I	CTNAG	2 cut(s)	333, 588
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	4 cut(s)	20, 112, 262, 870
Kzo9I	GATC	2 cut(s)	164, 520
Lsp1109I	GCAGC	1 cut(s)	721
LweI	GCATC	3 cut(s)	161, 240, 629
MaeI	CTAG	3 cut(s)	54, 161, 182
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	2 cut(s)	166, 522
MboI	GATC	2 cut(s)	164, 520
MboII	GAAGA	6 cut(s)	104, 205, 379, 457, 755, 859
MfeI	CAATTG	3 cut(s)	525, 777, 816
MflI	RGATCY	2 cut(s)	164, 520
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	9 cut(s)	356, 407, 525, 576, 697, 738, 777, 816, 842
MlyI	GAGTC	1 cut(s)	565
MnlI	CCTC	5 cut(s)	127, 328, 430, 597, 765
MseI	TTAA	4 cut(s)	207, 321, 411, 789
MspA1I	CMGCKG	1 cut(s)	458
MspI	CCGG	2 cut(s)	340, 802
MspR9I	CCNGG	4 cut(s)	340, 341, 769, 803
MunI	CAATTG	3 cut(s)	525, 777, 816
Mva1269I	GAATGC	1 cut(s)	582
MvaI	CCWGG	1 cut(s)	769
MwoI	GCNNNNNNNGC	2 cut(s)	32, 464
NciI	CCSGG	3 cut(s)	340, 341, 803
NdeII	GATC	2 cut(s)	164, 520
NlaIII	CATG	4 cut(s)	20, 112, 262, 870
NlaIV	GGNNCC	3 cut(s)	166, 344, 522
NmuCI	GTSAC	1 cut(s)	325
NspI	RCATGY	1 cut(s)	20
PagI	TCATGA	2 cut(s)	108, 258
PceI	AGGCCT	1 cut(s)	416
PctI	GAATGC	1 cut(s)	582
PfoI	TCCNGGA	1 cut(s)	767
PkrI	GCNGC	2 cut(s)	457, 711
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
PpuMI	RGGWCCY	1 cut(s)	343
Psp5II	RGGWCCY	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	767
PspGI	CCWGG	1 cut(s)	767
PspN4I	GGNNCC	3 cut(s)	166, 344, 522
PspPI	GGNCC	4 cut(s)	50, 236, 337, 343
PspPPI	RGGWCCY	1 cut(s)	343
PsuI	RGATCY	2 cut(s)	164, 520
RsaI	GTAC	4 cut(s)	147, 243, 296, 786
RsaNI	GTAC	4 cut(s)	146, 242, 295, 785
SaqAI	TTAA	4 cut(s)	207, 321, 411, 789
SatI	GCNGC	2 cut(s)	456, 710
Sau3AI	GATC	2 cut(s)	164, 520
Sau96I	GGNCC	4 cut(s)	50, 236, 337, 343
SchI	GAGTC	1 cut(s)	565
ScrFI	CCNGG	4 cut(s)	340, 341, 769, 803
SduI	GDGCHC	1 cut(s)	486
SfaNI	GCATC	3 cut(s)	161, 240, 629
SfcI	CTRYAG	1 cut(s)	645
SinI	GGWCC	1 cut(s)	343
SmaI	CCCGGG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	9 cut(s)	356, 407, 525, 576, 697, 738, 777, 816, 842
SseBI	AGGCCT	1 cut(s)	416
SsiI	CCGC	1 cut(s)	456
SspI	AATATT	1 cut(s)	211
SspMI	CTAG	3 cut(s)	54, 161, 182
StuI	AGGCCT	1 cut(s)	416
StyD4I	CCNGG	4 cut(s)	338, 339, 767, 801
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	2 cut(s)	503, 813
TaqI	TCGA	1 cut(s)	423
TasI	AATT	9 cut(s)	356, 407, 525, 576, 697, 738, 777, 816, 842
TatI	WGTACW	3 cut(s)	145, 241, 784
TauI	GCSGC	1 cut(s)	458
Tru1I	TTAA	4 cut(s)	207, 321, 411, 789
Tru9I	TTAA	4 cut(s)	207, 321, 411, 789
TscAI	CASTG	2 cut(s)	37, 274
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	1 cut(s)	709
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	6 cut(s)	113, 125, 275, 369, 477, 822
TspGWI	ACGGA	1 cut(s)	465
TspMI	CCCGGG	1 cut(s)	339
TspRI	CASTG	2 cut(s)	37, 274
VpaK11BI	GGWCC	1 cut(s)	343
XapI	RAATTY	1 cut(s)	697
XceI	RCATGY	1 cut(s)	20
XmaI	CCCGGG	1 cut(s)	339
XspI	CTAG	3 cut(s)	54, 161, 182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.