Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002582

Physical Location & Seq

Genomic Coordinates Forward (+)

33304841 .. 33306056

Gene Structure 1216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g36312.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTTTTCGGAATCACTAAAGAGAATAGAGTTGTGTTCGTGGCTACTCCTCCAGGGGATCAATATGAAATTGAATTTGGATGAGAACAAAAGAATGAGGGATACACACAGCATTGTACCTATAAGTGCCAAGAGTGGTGAAGACATTCCTGATTTGTTGTCACTGATGGTCTATTGGTCTCAGAAATCCATGGCTGAGAAGTTTACTTACATCAATGAAGTGCGGTGTACATTGTTGGAGGTCAATTATGTTGAAGGTCTTGGGACAACATTTGATGTTATATTGGTTAATGGGACAACAATTGATGTTATATTGGTTAATGAGCTTTGTGTGAAGGGAAAGTATCAGCATCATAGTGAAATCAGAGCTGCACAGGCTATCAAGATCACATCACCACAGGGGTTTAAACATGCTATTGCTGGCACTGCTCTCTATGTCATAAGGCCTGATGTTGACTTGGAAGAAATCAAGGAAGCAGCTATGGAAGACATGATGAATTGTGTTCTAGTGAACGACAACATGAGTGGTGGTAACAGCAGTTCTGGAGACAAAGGTGTATGTGCACAAGCATCAGCTCAAGGCTCTTTGGAAGCAATGCTAGAGTTTCTGAAGGCTCAAGAAGTTGATATTCCGGTTCGTGAAGAAGGCCAATGTGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002181 GO:0002183 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019538 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0033290 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0070993 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 ko03013 map00195 map01100 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 IF-2

Protein Analysis

221

Amino Acids

24.34

Weight (kDa)

4.77

Isoelectric Point (pI)

31.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21160 AT1G76720 AT1G76720 AT1G76810 AT2G27700 AT2G27700
fragaria_vesca	FvH4_2g13940 FvH4_2g13940 FvH4_2g13940 FvH4_4g36100 FvH4_4g36312
malus_domestica	MD05G1023200.v1.1 MD09G1087100.v1.1 MD10G1024100.v1.1
prunus_persica	Prupe.2G099300_v2.0.a1 Prupe.8G027900_v2.0.a1
pyrus_communis	pycom05g01470 pycom09g01240 pycom10g01600
rosa_chinensis	RchiOBHm_Chr4g0445721 RchiOBHm_Chr6g0275701
rosa_laevigata	RLG00000005714 RLG00000013337 RLG00000013444
rosa_multiflora	Rmu_co8469881.1_g000001 Rmu_sc0003637.1_g000011 Rmu_sc0003637.1_g000012 Rmu_sc0007122.1_g000003
rosa_roxburghii	Rroxscaffold_7G00193000
rosa_rugosa	Rorug04G0365200 Rorug06G0095700
rosa_samantha	Rh4AG426100 Rh4CG453100 Rh4DG434300 Rh6AG207600 Rh6BG210300 Rh6CG214100 Rh6DG203400
rosa_wichuraiana	Rw4G036490 Rw6G018100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	223
AclWI	GGATC	1 cut(s)	65
AcsI	RAATTY	1 cut(s)	73
AcuI	CTGAAG	1 cut(s)	629
AfaI	GTAC	2 cut(s)	117, 229
AgsI	TTSAA	2 cut(s)	73, 254
AjnI	CCWGG	1 cut(s)	51
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	4 cut(s)	325, 368, 479, 575
AluI	AGCT	4 cut(s)	325, 368, 479, 575
Alw21I	GWGCWC	1 cut(s)	565
Alw26I	GTCTC	2 cut(s)	183, 540
Alw44I	GTGCAC	1 cut(s)	561
AlwI	GGATC	1 cut(s)	65
AoxI	GGCC	2 cut(s)	443, 646
ApaLI	GTGCAC	1 cut(s)	561
ApeKI	GCWGC	2 cut(s)	368, 476
ApoI	RAATTY	1 cut(s)	73
Asp700I	GAANNNNTTC	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	149, 384
BaeGI	GKGCMC	1 cut(s)	565
BarI	GAAGNNNNNNTAC	2 cut(s)	191, 223
BbsI	GAAGAC	2 cut(s)	147, 492
Bbv12I	GWGCWC	1 cut(s)	565
BbvI	GCAGC	2 cut(s)	355, 488
BccI	CCATC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	53
BciVI	GTATCC	1 cut(s)	94
BcoDI	GTCTC	2 cut(s)	183, 540
BfaI	CTAG	2 cut(s)	506, 599
BfuI	GTATCC	1 cut(s)	94
BisI	GCNGC	2 cut(s)	369, 477
BlsI	GCNGC	2 cut(s)	370, 478
Bme1390I	CCNGG	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	3 cut(s)	358, 578, 646
BpiI	GAAGAC	2 cut(s)	147, 492
BpmI	CTGGAG	2 cut(s)	35, 564
BpuEI	CTTGAG	2 cut(s)	561, 600
BsaI	GGTCTC	1 cut(s)	183
BsaJI	CCNNGG	2 cut(s)	52, 189
BsaWI	WCCGGW	1 cut(s)	631
Bse3DI	GCAATG	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	2 cut(s)	52, 189
BseGI	GGATG	1 cut(s)	85
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	2 cut(s)	186, 194
BseRI	GAGGAG	1 cut(s)	38
BseSI	GKGCMC	1 cut(s)	565
BseXI	GCAGC	2 cut(s)	355, 488
BsgI	GTGCAG	1 cut(s)	354
BshFI	GGCC	2 cut(s)	445, 648
BsiHKAI	GWGCWC	1 cut(s)	565
BsiSI	CCGG	1 cut(s)	632
BslFI	GGGAC	2 cut(s)	277, 307
BsmAI	GTCTC	2 cut(s)	183, 540
BsmFI	GGGAC	2 cut(s)	277, 307
BsnI	GGCC	2 cut(s)	445, 648
Bso31I	GGTCTC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp1407I	TGTACA	1 cut(s)	227
Bsp143I	GATC	2 cut(s)	57, 384
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	1 cut(s)	223
BspANI	GGCC	2 cut(s)	445, 648
BspCNI	CTCAG	2 cut(s)	187, 193
BspPI	GGATC	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	600
BsrGI	TGTACA	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	52, 189
BssMI	GATC	2 cut(s)	57, 384
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	53
BstAUI	TGTACA	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	2 cut(s)	180, 195
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	2 cut(s)	60, 387
BstMAI	GTCTC	2 cut(s)	183, 540
BstMBI	GATC	2 cut(s)	57, 384
BstMWI	GCNNNNNNNGC	2 cut(s)	374, 425
BstNI	CCWGG	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	51
BstSLI	GKGCMC	1 cut(s)	565
BstV1I	GCAGC	2 cut(s)	355, 488
BstV2I	GAAGAC	2 cut(s)	147, 492
BsuI	GTATCC	1 cut(s)	94
BsuRI	GGCC	2 cut(s)	445, 648
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	2 cut(s)	161, 423
Cac8I	GCNNGC	1 cut(s)	421
Csp6I	GTAC	2 cut(s)	116, 228
CspCI	CAANNNNNGTGG	2 cut(s)	505, 540
CviAII	CATG	4 cut(s)	190, 410, 490, 520
CviQI	GTAC	2 cut(s)	116, 228
DdeI	CTNAG	2 cut(s)	180, 195
DpnI	GATC	2 cut(s)	59, 386
DpnII	GATC	2 cut(s)	57, 384
DraI	TTTAAA	1 cut(s)	406
Eco130I	CCWWGG	1 cut(s)	189
Eco147I	AGGCCT	1 cut(s)	445
Eco31I	GGTCTC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	629
EcoRII	CCWGG	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	4 cut(s)	193, 413, 493, 523
FaqI	GGGAC	2 cut(s)	277, 307
FatI	CATG	4 cut(s)	189, 409, 489, 519
Fnu4HI	GCNGC	2 cut(s)	369, 477
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	2 cut(s)	369, 477
FspBI	CTAG	2 cut(s)	506, 599
GluI	GCNGC	2 cut(s)	369, 477
GsuI	CTGGAG	2 cut(s)	35, 564
HaeIII	GGCC	2 cut(s)	445, 648
HapII	CCGG	1 cut(s)	632
Hin1II	CATG	4 cut(s)	193, 413, 493, 523
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	1 cut(s)	632
HphI	GGTGA	2 cut(s)	149, 384
Hpy166II	GTNNAC	5 cut(s)	204, 228, 454, 511, 563
Hpy188I	TCNGA	4 cut(s)	10, 183, 365, 609
Hpy188III	TCNNGA	5 cut(s)	149, 382, 543, 617, 638
Hpy8I	GTNNAC	5 cut(s)	204, 228, 454, 511, 563
HpyAV	CCTTC	4 cut(s)	248, 328, 604, 638
HpyCH4V	TGCA	2 cut(s)	371, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	374, 425
HpyF3I	CTNAG	2 cut(s)	180, 195
Hsp92II	CATG	4 cut(s)	193, 413, 493, 523
Kzo9I	GATC	2 cut(s)	57, 384
LpnPI	CCDG	9 cut(s)	38, 65, 162, 359, 383, 405, 459, 528, 645
Lsp1109I	GCAGC	2 cut(s)	355, 488
LweI	GCATC	3 cut(s)	358, 578, 646
MaeI	CTAG	2 cut(s)	506, 599
MaeIII	GTNAC	2 cut(s)	159, 530
MalI	GATC	2 cut(s)	59, 386
MboI	GATC	2 cut(s)	57, 384
MboII	GAAGA	4 cut(s)	152, 473, 497, 653
MfeI	CAATTG	1 cut(s)	300
MhlI	GDGCHC	1 cut(s)	565
MluCI	AATT	5 cut(s)	68, 73, 244, 300, 496
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	3 cut(s)	59, 90, 232
MroXI	GAANNNNTTC	1 cut(s)	144
MseI	TTAA	3 cut(s)	288, 318, 405
MslI	CAYNNNNRTG	1 cut(s)	354
MspI	CCGG	1 cut(s)	632
MspR9I	CCNGG	1 cut(s)	53
MssI	GTTTAAAC	1 cut(s)	406
MunI	CAATTG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	2 cut(s)	374, 425
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	2 cut(s)	57, 384
NlaIII	CATG	4 cut(s)	193, 413, 493, 523
NmuCI	GTSAC	1 cut(s)	159
NspI	RCATGY	1 cut(s)	413
PceI	AGGCCT	1 cut(s)	445
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	370, 478
PmeI	GTTTAAAC	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PsrI	GAACNNNNNNTAC	2 cut(s)	523, 555
RsaI	GTAC	2 cut(s)	117, 229
RsaNI	GTAC	2 cut(s)	116, 228
RseI	CAYNNNNRTG	1 cut(s)	354
SaqAI	TTAA	3 cut(s)	288, 318, 405
SatI	GCNGC	2 cut(s)	369, 477
Sau3AI	GATC	2 cut(s)	57, 384
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	565
SetI	ASST	8 cut(s)	121, 243, 259, 327, 370, 481, 556, 577
SfaNI	GCATC	3 cut(s)	358, 578, 646
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	2 cut(s)	576, 615
SmoI	CTYRAG	2 cut(s)	576, 615
Sse9I	AATT	5 cut(s)	68, 73, 244, 300, 496
SseBI	AGGCCT	1 cut(s)	445
SsiI	CCGC	1 cut(s)	223
SspMI	CTAG	2 cut(s)	506, 599
StuI	AGGCCT	1 cut(s)	445
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	189
TasI	AATT	5 cut(s)	68, 73, 244, 300, 496
TatI	WGTACW	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	3 cut(s)	288, 318, 405
Tru9I	TTAA	3 cut(s)	288, 318, 405
TscAI	CASTG	2 cut(s)	168, 430
TseFI	GTSAC	1 cut(s)	159
TseI	GCWGC	2 cut(s)	368, 476
Tsp45I	GTSAC	1 cut(s)	159
TspDTI	ATGAA	3 cut(s)	80, 231, 509
TspRI	CASTG	2 cut(s)	168, 430
VneI	GTGCAC	1 cut(s)	561
XapI	RAATTY	1 cut(s)	73
XceI	RCATGY	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	144
XspI	CTAG	2 cut(s)	506, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.