Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002582

Physical Location & Seq

Genomic Coordinates Reverse (-)

1791431 .. 1795744

Gene Structure 4314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g01470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGCAGGGACCTATTGTTGCTACAATTCGATCTTTATTGACTCCACATCCAATGAAAGAACTTCGTGTGAAGGGAGCGTATCTGCATCATAGTGAAATCAAGGCTGCACAAGGTATCAAAATTGCAGCACAGGGTCTTGAACATGCTATTGCTGGTACTGCCCTACATGTGGTAGGGCCTCATGATGACTTGGAGGATATCAAGGAAACAGCTATGGAAGACATGAAGTCAGTTTTGAATAGAATTGACAAGACTGGTGAGGGAGTTTGCGTACAAGCATCTACTCTAGGTTCCTTGGAAGCATTGCTAGAGTTTTTGAAAACACCAGCCGTAAACATTCCTGTTAGTGGTATTAGCATAGGCCCTGTACACAAAAAGGATGTCATGAAGGCCAGTGTAATGCTTGAAAAGAAAAAGGAGTTTGCCACCATCTTGGCATTTGATGTCAAAGTTACGCCAGAGGCCCGAGAAATGGCAGACGATTTAGGTGTGAAGATTTTTATTGCTGATATCATCTATCACTTGTTCGATCAATTTAAGGCATATATTGACAATATTAAGGAGGAAAAGAAGAAGGAATCTGCTGATGAAGCTGTCTTTCCTTGCGTGCTCAAGATTATGCCCAACTGTGTTTTCAACAAGATCGATCCAATTATCTTGGGGGTTGACGTTCTCGATGGCATTTTGAAGGTGGGTACTCCAATTTGTATTCCTCAAAGGGATTTTATTTCTATTGGGCGCATTGCATCCATTGAAAATAACCACAAACCTGTTGATATGGCGAAGAAGGGGTCGAAATTAGCCATTAAGATTATTGGGTCAAATTCCGAAGAACAGCAAAAGATGTTTGGTAGGCACTTTGAGATTGATGATGAACTTGTCAGCCAAATCTCAAGGAATTCGATTGATGTACTTAAAGTGAATTACCGAGATGAACTGTCAATGGACGAGTGGAAGCTGCTTGTGAAATTGAAGAAACTTTTCGAGATTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002181 GO:0002183 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019538 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0033290 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0070993 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 ko03013 map00195 map01100 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 IF-2

Protein Analysis

332

Amino Acids

36.74

Weight (kDa)

6.23

Isoelectric Point (pI)

21.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2	PF11987	68 - 180	8.4e-23	Translation-initiation factor 2
GTP_EFTU_D4	PF14578	201 - 293	1.1e-15	Elongation factor Tu domain 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21160 AT1G76720 AT1G76720 AT1G76810 AT2G27700 AT2G27700
fragaria_vesca	FvH4_2g13940 FvH4_2g13940 FvH4_2g13940 FvH4_4g36100 FvH4_4g36312
malus_domestica	MD05G1023200.v1.1 MD09G1087100.v1.1 MD10G1024100.v1.1
prunus_persica	Prupe.2G099300_v2.0.a1 Prupe.8G027900_v2.0.a1
pyrus_communis	pycom05g01470 pycom09g01240 pycom10g01600
rosa_chinensis	RchiOBHm_Chr4g0445721 RchiOBHm_Chr6g0275701
rosa_laevigata	RLG00000005714 RLG00000013337 RLG00000013444
rosa_multiflora	Rmu_co8469881.1_g000001 Rmu_sc0003637.1_g000011 Rmu_sc0003637.1_g000012 Rmu_sc0007122.1_g000003
rosa_roxburghii	Rroxscaffold_7G00193000
rosa_rugosa	Rorug04G0365200 Rorug06G0095700
rosa_samantha	Rh4AG426100 Rh4CG453100 Rh4DG434300 Rh6AG207600 Rh6BG210300 Rh6CG214100 Rh6DG203400
rosa_wichuraiana	Rw4G036490 Rw6G018100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	641
AcsI	RAATTY	2 cut(s)	823, 898
AfaI	GTAC	5 cut(s)	157, 273, 369, 697, 912
AfiI	CCNNNNNNNGG	3 cut(s)	169, 347, 472
AflIII	ACRYGT	1 cut(s)	166
AgsI	TTSAA	8 cut(s)	140, 238, 319, 407, 637, 688, 755, 973
AhdI	GACNNNNNGTC	1 cut(s)	226
AjuI	GAANNNNNNNTTGG	2 cut(s)	617, 649
AluBI	AGCT	3 cut(s)	212, 593, 958
AluI	AGCT	3 cut(s)	212, 593, 958
Alw21I	GWGCWC	1 cut(s)	612
AlwI	GGATC	1 cut(s)	641
Ama87I	CYCGRG	1 cut(s)	465
AoxI	GGCC	4 cut(s)	176, 361, 390, 462
ApeKI	GCWGC	3 cut(s)	104, 125, 958
ApoI	RAATTY	2 cut(s)	823, 898
ArsI	GACNNNNNNTTYG	4 cut(s)	366, 398, 776, 808
Asp700I	GAANNNNTTC	1 cut(s)	980
AspLEI	GCGC	1 cut(s)	741
AspS9I	GGNCC	4 cut(s)	8, 176, 362, 463
AsuHPI	GGTGA	1 cut(s)	269
AvaI	CYCGRG	1 cut(s)	465
AvaII	GGWCC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	612
BbvI	GCAGC	3 cut(s)	91, 137, 945
BccI	CCATC	2 cut(s)	437, 671
BceAI	ACGGC	1 cut(s)	314
BfaI	CTAG	2 cut(s)	287, 308
BisI	GCNGC	3 cut(s)	105, 126, 959
BlsI	GCNGC	3 cut(s)	106, 127, 960
Bme18I	GGWCC	1 cut(s)	8
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmeT110I	CYCGRG	1 cut(s)	465
BmgT120I	GGNCC	4 cut(s)	8, 176, 362, 463
BmiI	GGNNCC	2 cut(s)	9, 292
BmsI	GCATC	3 cut(s)	94, 287, 755
BpiI	GAAGAC	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	596, 877
Bsa29I	ATCGAT	1 cut(s)	645
BsaJI	CCNNGG	1 cut(s)	294
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 347, 472
Bse1I	ACTGG	2 cut(s)	259, 393
Bse3DI	GCAATG	2 cut(s)	302, 741
BseCI	ATCGAT	1 cut(s)	645
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	3 cut(s)	46, 385, 746
BseLI	CCNNNNNNNGG	3 cut(s)	169, 347, 472
BseMI	GCAATG	2 cut(s)	302, 741
BseNI	ACTGG	2 cut(s)	259, 393
BseXI	GCAGC	3 cut(s)	91, 137, 945
BsgI	GTGCAG	1 cut(s)	90
BshFI	GGCC	4 cut(s)	178, 363, 392, 464
BshVI	ATCGAT	1 cut(s)	645
BsiHKAI	GWGCWC	1 cut(s)	612
BsiHKCI	CYCGRG	1 cut(s)	465
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	3 cut(s)	169, 347, 472
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	4 cut(s)	178, 363, 392, 464
BsoBI	CYCGRG	1 cut(s)	465
Bsp1286I	GDGCHC	1 cut(s)	612
Bsp1407I	TGTACA	1 cut(s)	367
Bsp143I	GATC	4 cut(s)	29, 529, 642, 646
BspANI	GGCC	4 cut(s)	178, 363, 392, 464
BspDI	ATCGAT	1 cut(s)	645
BspHI	TCATGA	2 cut(s)	181, 384
BspLI	GGNNCC	2 cut(s)	9, 292
BspPI	GGATC	1 cut(s)	641
BsrDI	GCAATG	2 cut(s)	302, 741
BsrGI	TGTACA	1 cut(s)	367
BsrI	ACTGG	2 cut(s)	259, 393
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	4 cut(s)	29, 529, 642, 646
BssT1I	CCWWGG	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	629, 939
BstAUI	TGTACA	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	608
BstF5I	GGATG	3 cut(s)	46, 385, 746
BstHHI	GCGC	1 cut(s)	741
BstKTI	GATC	4 cut(s)	32, 532, 645, 649
BstMBI	GATC	4 cut(s)	29, 529, 642, 646
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 590
BstNSI	RCATGY	2 cut(s)	146, 170
BstV1I	GCAGC	3 cut(s)	91, 137, 945
BstV2I	GAAGAC	1 cut(s)	225
BstXI	CCANNNNNNTGG	1 cut(s)	433
Bsu15I	ATCGAT	1 cut(s)	645
BsuRI	GGCC	4 cut(s)	178, 363, 392, 464
BsuTUI	ATCGAT	1 cut(s)	645
BtsCI	GGATG	3 cut(s)	46, 385, 746
BtsIMutI	CAGTG	1 cut(s)	400
Cac8I	GCNNGC	1 cut(s)	608
CciI	TCATGA	2 cut(s)	181, 384
CfoI	GCGC	1 cut(s)	741
Cfr13I	GGNCC	4 cut(s)	8, 176, 362, 463
ClaI	ATCGAT	1 cut(s)	645
Csp6I	GTAC	5 cut(s)	156, 272, 368, 696, 911
CviAII	CATG	6 cut(s)	143, 167, 182, 223, 385, 993
CviQI	GTAC	5 cut(s)	156, 272, 368, 696, 911
DpnI	GATC	4 cut(s)	31, 531, 644, 648
DpnII	GATC	4 cut(s)	29, 529, 642, 646
DriI	GACNNNNNGTC	1 cut(s)	226
Eam1105I	GACNNNNNGTC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	294
Eco32I	GATATC	2 cut(s)	199, 511
Eco47I	GGWCC	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	465
EcoO109I	RGGNCCY	3 cut(s)	8, 176, 362
EcoRI	GAATTC	1 cut(s)	898
EcoRV	GATATC	2 cut(s)	199, 511
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	6 cut(s)	146, 170, 185, 226, 388, 996
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	6 cut(s)	142, 166, 181, 222, 384, 992
Fnu4HI	GCNGC	3 cut(s)	105, 126, 959
FokI	GGATG	3 cut(s)	33, 392, 733
Fsp4HI	GCNGC	3 cut(s)	105, 126, 959
FspBI	CTAG	2 cut(s)	287, 308
GlaI	GCGC	1 cut(s)	740
GluI	GCNGC	3 cut(s)	105, 126, 959
HaeIII	GGCC	4 cut(s)	178, 363, 392, 464
HhaI	GCGC	1 cut(s)	741
Hin1II	CATG	6 cut(s)	146, 170, 185, 226, 388, 996
Hin6I	GCGC	1 cut(s)	739
HinP1I	GCGC	1 cut(s)	739
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HinfI	GANTC	3 cut(s)	40, 578, 988
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	3 cut(s)	334, 370, 667
Hpy188I	TCNGA	1 cut(s)	829
Hpy188III	TCNNGA	6 cut(s)	137, 182, 385, 613, 674, 985
Hpy8I	GTNNAC	3 cut(s)	334, 370, 667
HpyAV	CCTTC	5 cut(s)	64, 382, 568, 682, 781
HpyCH4III	ACNGT	2 cut(s)	629, 939
HpyCH4IV	ACGT	1 cut(s)	669
HpyCH4V	TGCA	5 cut(s)	4, 85, 107, 125, 746
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 590
HpySE526I	ACGT	1 cut(s)	669
Hsp92II	CATG	6 cut(s)	146, 170, 185, 226, 388, 996
HspAI	GCGC	1 cut(s)	739
Kzo9I	GATC	4 cut(s)	29, 529, 642, 646
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	9 cut(s)	116, 138, 240, 339, 354, 378, 406, 471, 783
Lsp1109I	GCAGC	3 cut(s)	91, 137, 945
LweI	GCATC	3 cut(s)	94, 287, 755
MaeI	CTAG	2 cut(s)	287, 308
MaeII	ACGT	1 cut(s)	669
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	4 cut(s)	31, 531, 644, 648
MboI	GATC	4 cut(s)	29, 529, 642, 646
MboII	GAAGA	6 cut(s)	230, 505, 583, 796, 842, 985
MhlI	GDGCHC	1 cut(s)	612
MlyI	GAGTC	1 cut(s)	34
MnlI	CCTC	6 cut(s)	187, 189, 253, 454, 556, 723
MroXI	GAANNNNTTC	1 cut(s)	980
MseI	TTAA	4 cut(s)	537, 558, 807, 915
MslI	CAYNNNNRTG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	158, 590
NdeII	GATC	4 cut(s)	29, 529, 642, 646
NlaIII	CATG	6 cut(s)	146, 170, 185, 226, 388, 996
NlaIV	GGNNCC	2 cut(s)	9, 292
NspI	RCATGY	2 cut(s)	146, 170
PagI	TCATGA	2 cut(s)	181, 384
PciI	ACATGT	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	980
PfeI	GAWTC	2 cut(s)	578, 988
PkrI	GCNGC	3 cut(s)	106, 127, 960
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
PpuMI	RGGWCCY	1 cut(s)	8
PscI	ACATGT	1 cut(s)	166
Psp5II	RGGWCCY	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	9, 292
PspPI	GGNCC	4 cut(s)	8, 176, 362, 463
PspPPI	RGGWCCY	1 cut(s)	8
RsaI	GTAC	5 cut(s)	157, 273, 369, 697, 912
RsaNI	GTAC	5 cut(s)	156, 272, 368, 696, 911
RseI	CAYNNNNRTG	1 cut(s)	90
SaqAI	TTAA	4 cut(s)	537, 558, 807, 915
SatI	GCNGC	3 cut(s)	105, 126, 959
Sau3AI	GATC	4 cut(s)	29, 529, 642, 646
Sau96I	GGNCC	4 cut(s)	8, 176, 362, 463
SchI	GAGTC	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	612
SfaNI	GCATC	3 cut(s)	94, 287, 755
SinI	GGWCC	1 cut(s)	8
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	2 cut(s)	611, 892
SmoI	CTYRAG	2 cut(s)	611, 892
SspI	AATATT	1 cut(s)	556
SspMI	CTAG	2 cut(s)	287, 308
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	629, 939
TaiI	ACGT	1 cut(s)	672
TaqI	TCGA	7 cut(s)	28, 528, 645, 675, 794, 902, 984
TatI	WGTACW	2 cut(s)	367, 910
TfiI	GAWTC	2 cut(s)	578, 988
Tru1I	TTAA	4 cut(s)	537, 558, 807, 915
Tru9I	TTAA	4 cut(s)	537, 558, 807, 915
TscAI	CASTG	1 cut(s)	400
TseI	GCWGC	3 cut(s)	104, 125, 958
TspDTI	ATGAA	6 cut(s)	68, 239, 401, 603, 888, 948
TspRI	CASTG	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	8
XapI	RAATTY	2 cut(s)	823, 898
XceI	RCATGY	2 cut(s)	146, 170
XmnI	GAANNNNTTC	1 cut(s)	980
XspI	CTAG	2 cut(s)	287, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.