Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002582

Physical Location & Seq

Genomic Coordinates Forward (+)

6251962 .. 6252558

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1087100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGCTGGTTGTTGACATTATGCATGGCTCAGAGCCTTGGACAATAGGGTCACTCAATCTTTTTAAAATGCGGAATACGGAATTCATTGTTGCATTGAATAAGGTGGACAGACTCTACGGGTGGAAAACCTGCCGCAATGCACCCATTGTGAAAGCAATGAAGAAACAATCTAAGGATGTACAAAATAAGTCCAATATGAAGCTCGCTACAAGTGCCGCTGGCGGTGAAGGGATTCCAGATTTGCTATTACTATTGCTTCAGTGGACGCTGAAAACTATGGTTGAGAAACTCACTTTCAGCAGTAAAATGGTTAAGGTTACAGAAGGCCATGGGACAACAATTGGCATTGTATTGGTTAATGGTGTGCTTCATGAAGGAGATCAAATAGTTGTTTGCGGCATGCAAGGGCCTATTGTTACTACAATTCGAGCTTTATTGACACCACATTCAATGAAAGAACTTCATGTGAAAGGGAACCCCAACTTCTTAGCCCTTGCAAGGTTTGTCCTTATAAGAGGTTGGGCTACTCTTCATATTGTCAATTGGTTTTATGGTGGAACCCCAACTTTTTATAAGCTCGATTTCAACTTGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4219 PGG

Protein Analysis

199

Amino Acids

22.06

Weight (kDa)

9.7

Isoelectric Point (pI)

18.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	2 - 87	1.6e-07	Elongation factor Tu GTP binding domain
GTP_EFTU_D2	PF03144	111 - 157	3.8e-06	Elongation factor Tu domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21160 AT1G76720 AT1G76720 AT1G76810 AT2G27700 AT2G27700
fragaria_vesca	FvH4_2g13940 FvH4_2g13940 FvH4_2g13940 FvH4_4g36100 FvH4_4g36312
malus_domestica	MD05G1023200.v1.1 MD09G1087100.v1.1 MD10G1024100.v1.1
prunus_persica	Prupe.2G099300_v2.0.a1 Prupe.8G027900_v2.0.a1
pyrus_communis	pycom05g01470 pycom09g01240 pycom10g01600
rosa_chinensis	RchiOBHm_Chr4g0445721 RchiOBHm_Chr6g0275701
rosa_laevigata	RLG00000005714 RLG00000013337 RLG00000013444
rosa_multiflora	Rmu_co8469881.1_g000001 Rmu_sc0003637.1_g000011 Rmu_sc0003637.1_g000012 Rmu_sc0007122.1_g000003
rosa_roxburghii	Rroxscaffold_7G00193000
rosa_rugosa	Rorug04G0365200 Rorug06G0095700
rosa_samantha	Rh4AG426100 Rh4CG453100 Rh4DG434300 Rh6AG207600 Rh6BG210300 Rh6CG214100 Rh6DG203400
rosa_wichuraiana	Rw4G036490 Rw6G018100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	512, 573
AasI	GACNNNNNNGTC	1 cut(s)	46
Acc36I	ACCTGC	1 cut(s)	137
AciI	CCGC	5 cut(s)	70, 133, 216, 222, 396
AcsI	RAATTY	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	242
AfaI	GTAC	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	498
AgsI	TTSAA	3 cut(s)	97, 450, 586
AluBI	AGCT	3 cut(s)	202, 431, 577
AluI	AGCT	3 cut(s)	202, 431, 577
AoxI	GGCC	2 cut(s)	325, 407
ApoI	RAATTY	1 cut(s)	80
Asp700I	GAANNNNTTC	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	407
AsuHPI	GGTGA	1 cut(s)	236
BfuAI	ACCTGC	1 cut(s)	137
BisI	GCNGC	3 cut(s)	133, 216, 397
BlsI	GCNGC	3 cut(s)	134, 217, 398
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	2 cut(s)	476, 559
BsaJI	CCNNGG	2 cut(s)	35, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	498
Bse3DI	GCAATG	2 cut(s)	142, 162
BseDI	CCNNGG	2 cut(s)	35, 328
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	498
BseMI	GCAATG	2 cut(s)	142, 162
BseMII	CTCAG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	327, 409
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	1 cut(s)	498
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	327, 409
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	1 cut(s)	379
Bsp19I	CCATGG	1 cut(s)	328
BspACI	CCGC	5 cut(s)	70, 133, 216, 222, 396
BspANI	GGCC	2 cut(s)	327, 409
BspCNI	CTCAG	1 cut(s)	41
BspHI	TCATGA	1 cut(s)	370
BspLI	GGNNCC	2 cut(s)	476, 559
BspMI	ACCTGC	1 cut(s)	137
BsrDI	GCAATG	2 cut(s)	142, 162
BsrGI	TGTACA	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	35, 328
BssMI	GATC	1 cut(s)	379
BssT1I	CCWWGG	2 cut(s)	35, 328
Bst6I	CTCTTC	1 cut(s)	534
BstAUI	TGTACA	1 cut(s)	178
BstC8I	GCNNGC	3 cut(s)	204, 220, 401
BstDEI	CTNAG	3 cut(s)	28, 171, 487
BstDSI	CCRYGG	1 cut(s)	328
BstF5I	GGATG	1 cut(s)	181
BstKTI	GATC	1 cut(s)	382
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	327, 409
BtgI	CCRYGG	1 cut(s)	328
BtsCI	GGATG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	266
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	3 cut(s)	204, 220, 401
CciI	TCATGA	1 cut(s)	370
Cfr13I	GGNCC	1 cut(s)	407
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	179
CviAII	CATG	5 cut(s)	23, 329, 371, 400, 464
CviJI	RGCY	9 cut(s)	27, 34, 202, 327, 409, 431, 491, 524, 577
CviKI_1	RGCY	9 cut(s)	27, 34, 202, 327, 409, 431, 491, 524, 577
CviQI	GTAC	1 cut(s)	179
DdeI	CTNAG	3 cut(s)	28, 171, 487
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
DraI	TTTAAA	1 cut(s)	64
DrdI	GACNNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Eco130I	CCWWGG	2 cut(s)	35, 328
Eco57I	CTGAAG	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	407
EcoRI	GAATTC	1 cut(s)	80
EcoT14I	CCWWGG	2 cut(s)	35, 328
EcoT22I	ATGCAT	1 cut(s)	24
ErhI	CCWWGG	2 cut(s)	35, 328
FaeI	CATG	5 cut(s)	26, 332, 374, 403, 467
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	5 cut(s)	22, 328, 370, 399, 463
Fnu4HI	GCNGC	3 cut(s)	133, 216, 397
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	3 cut(s)	133, 216, 397
GluI	GCNGC	3 cut(s)	133, 216, 397
HaeIII	GGCC	2 cut(s)	327, 409
HgaI	GACGC	1 cut(s)	274
Hin1II	CATG	5 cut(s)	26, 332, 374, 403, 467
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	2 cut(s)	111, 232
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	3 cut(s)	13, 106, 264
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	2 cut(s)	236, 371
Hpy8I	GTNNAC	3 cut(s)	13, 106, 264
HpyAV	CCTTC	3 cut(s)	221, 317, 368
HpyCH4V	TGCA	5 cut(s)	22, 92, 140, 403, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	3 cut(s)	28, 171, 487
Hsp92II	CATG	5 cut(s)	26, 332, 374, 403, 467
Kzo9I	GATC	1 cut(s)	379
LpnPI	CCDG	3 cut(s)	142, 204, 249
MaeIII	GTNAC	3 cut(s)	48, 316, 415
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	2 cut(s)	172, 521
MfeI	CAATTG	2 cut(s)	339, 541
MluCI	AATT	4 cut(s)	80, 339, 423, 541
MlyI	GAGTC	1 cut(s)	105
MnlI	CCTC	1 cut(s)	509
Mph1103I	ATGCAT	1 cut(s)	24
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	3 cut(s)	63, 312, 357
MspA1I	CMGCKG	1 cut(s)	218
MunI	CAATTG	2 cut(s)	339, 541
MwoI	GCNNNNNNNGC	1 cut(s)	212
NcoI	CCATGG	1 cut(s)	328
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	5 cut(s)	26, 332, 374, 403, 467
NlaIV	GGNNCC	2 cut(s)	476, 559
NmuCI	GTSAC	1 cut(s)	48
NsiI	ATGCAT	1 cut(s)	24
NspI	RCATGY	1 cut(s)	403
PaeI	GCATGC	1 cut(s)	403
PagI	TCATGA	1 cut(s)	370
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	3 cut(s)	134, 217, 398
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
PsiI	TTATAA	2 cut(s)	512, 573
PspN4I	GGNNCC	2 cut(s)	476, 559
PspPI	GGNCC	1 cut(s)	407
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
SaqAI	TTAA	3 cut(s)	63, 312, 357
SatI	GCNGC	3 cut(s)	133, 216, 397
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	1 cut(s)	407
SchI	GAGTC	1 cut(s)	105
SetI	ASST	8 cut(s)	105, 131, 204, 318, 433, 503, 520, 579
SphI	GCATGC	1 cut(s)	403
Sse9I	AATT	4 cut(s)	80, 339, 423, 541
SsiI	CCGC	5 cut(s)	70, 133, 216, 222, 396
StyI	CCWWGG	2 cut(s)	35, 328
TaqI	TCGA	2 cut(s)	427, 579
TasI	AATT	4 cut(s)	80, 339, 423, 541
TatI	WGTACW	1 cut(s)	178
TauI	GCSGC	3 cut(s)	135, 218, 399
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	3 cut(s)	63, 312, 357
Tru9I	TTAA	3 cut(s)	63, 312, 357
TscAI	CASTG	1 cut(s)	266
TseFI	GTSAC	1 cut(s)	48
Tsp45I	GTSAC	1 cut(s)	48
TspDTI	ATGAA	8 cut(s)	73, 173, 212, 359, 387, 452, 467, 521
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	266
XapI	RAATTY	1 cut(s)	80
XceI	RCATGY	1 cut(s)	403
XmnI	GAANNNNTTC	1 cut(s)	231
Zsp2I	ATGCAT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.