Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002582

Physical Location & Seq

Genomic Coordinates Reverse (-)

1673929 .. 1677576

Gene Structure 3648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g01600.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGCAGGGACCTATTGTTGCTACAATTCGGTCTCTATTGACACCACATCCAATGAAAGAACTTCGTGTGAAGGGAGCATATCTGCATCATAGTGAAATCAAGGCTGCACAGGGTATCAAAATCTCAGCACAGGGTCTTGAGCACGCTATTGCTGGTACTGCTCTACATGTGGTAGGGCCTCATGATGACTTGGACGAAATCAAGGAAACAGCTATGGAAGACATGAAGTCAGTTTTGAATAGGATTGACAAGAGTGGTGAGGGTGTTTGCGTACAAGCATCTACTCTAGGTTCCTTGGAAGCATTGCTAGAGTTTTTGAAAACACCAGTTGTTAACATTCCCGTTAGTGGTATTAGCATAGGACCTGTGCATAAAAAGGATGTCATGAAGGCCAGTGTAATGCTTGAAAAGAAAAAGGAGTTTGCCACCATCTTGGCATTTGATGTCAAAGTGACACCAGAGGCCCGAGAAATGGCAGATGATTTAGGTGTGAAGATCTTCATTGCCGATATCATCTATCACTTGTTTGATCAATTTAAGGCCTATATTGAAAATATCAAGGAGGAAAAGAAGAAGGAATCTGCTGATGAAGCTGTCTTTCCGTGCGTGCTCAAGATTATGCCCAACTGTGTTTTCAACAAGATCGATCCAATTATTTTGGGGGTTGAGGTTCTCGATGGCATTTTGAAGGTGGGTACTCCAATTTGTATTCCTCAAAGGGATTTTATTTCTATTGGGCGCATTGCATCCATTGAAAATAACCACAAACCTGTTGATACGGCGAAGAAGGGGTCGAAGTTAGCCATTAAGATTATCGGGTCAAATTCGGAAGAGCAGCAAAAGATGTTTGGTAGGCATTTTGAAATTGATGACGAACTTGTCAGCCAAATCTCAAGGAATTCGATTGATGTACTTAAAGCGAATTACCGGGATGAACTATCAATGGAGGAGTGGAAGCTGCTCGTGAAATTGAAGAAACTTTTCGAGATACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002181 GO:0002183 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019538 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0033290 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0070993 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 ko03013 map00195 map01100 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 IF-2

Protein Analysis

332

Amino Acids

36.75

Weight (kDa)

6.23

Isoelectric Point (pI)

24.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21160 AT1G76720 AT1G76720 AT1G76810 AT2G27700 AT2G27700
fragaria_vesca	FvH4_2g13940 FvH4_2g13940 FvH4_2g13940 FvH4_4g36100 FvH4_4g36312
malus_domestica	MD05G1023200.v1.1 MD09G1087100.v1.1 MD10G1024100.v1.1
prunus_persica	Prupe.2G099300_v2.0.a1 Prupe.8G027900_v2.0.a1
pyrus_communis	pycom05g01470 pycom09g01240 pycom10g01600
rosa_chinensis	RchiOBHm_Chr4g0445721 RchiOBHm_Chr6g0275701
rosa_laevigata	RLG00000005714 RLG00000013337 RLG00000013444
rosa_multiflora	Rmu_co8469881.1_g000001 Rmu_sc0003637.1_g000011 Rmu_sc0003637.1_g000012 Rmu_sc0007122.1_g000003
rosa_roxburghii	Rroxscaffold_7G00193000
rosa_rugosa	Rorug04G0365200 Rorug06G0095700
rosa_samantha	Rh4AG426100 Rh4CG453100 Rh4DG434300 Rh6AG207600 Rh6BG210300 Rh6CG214100 Rh6DG203400
rosa_wichuraiana	Rw4G036490 Rw6G018100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	878
AclWI	GGATC	1 cut(s)	641
AcsI	RAATTY	2 cut(s)	823, 898
AfaI	GTAC	4 cut(s)	157, 273, 697, 912
AfiI	CCNNNNNNNGG	2 cut(s)	347, 472
AflIII	ACRYGT	1 cut(s)	166
AgsI	TTSAA	9 cut(s)	238, 319, 407, 551, 637, 688, 755, 863, 973
AhdI	GACNNNNNGTC	1 cut(s)	226
AjuI	GAANNNNNNNTTGG	2 cut(s)	617, 649
AluBI	AGCT	3 cut(s)	212, 593, 958
AluI	AGCT	3 cut(s)	212, 593, 958
Alw21I	GWGCWC	2 cut(s)	144, 612
Alw26I	GTCTC	1 cut(s)	36
AlwI	GGATC	1 cut(s)	641
Ama87I	CYCGRG	1 cut(s)	465
AoxI	GGCC	4 cut(s)	176, 390, 462, 540
ApeKI	GCWGC	3 cut(s)	104, 835, 958
ApoI	RAATTY	2 cut(s)	823, 898
ArsI	GACNNNNNNTTYG	2 cut(s)	776, 808
Asp700I	GAANNNNTTC	2 cut(s)	497, 980
AspLEI	GCGC	1 cut(s)	741
AspS9I	GGNCC	4 cut(s)	8, 176, 362, 463
AsuC2I	CCSGG	1 cut(s)	929
AsuHPI	GGTGA	1 cut(s)	269
AvaI	CYCGRG	1 cut(s)	465
AvaII	GGWCC	2 cut(s)	8, 362
BauI	CACGAG	1 cut(s)	962
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	2 cut(s)	144, 612
BbvI	GCAGC	3 cut(s)	91, 847, 945
BccI	CCATC	2 cut(s)	437, 671
BceAI	ACGGC	1 cut(s)	795
BclI	TGATCA	1 cut(s)	529
BcnI	CCSGG	1 cut(s)	929
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	2 cut(s)	287, 308
BglII	AGATCT	1 cut(s)	495
BisI	GCNGC	3 cut(s)	105, 836, 959
BlsI	GCNGC	3 cut(s)	106, 837, 960
Bme1390I	CCNGG	1 cut(s)	929
Bme18I	GGWCC	2 cut(s)	8, 362
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmeT110I	CYCGRG	1 cut(s)	465
BmgT120I	GGNCC	4 cut(s)	8, 176, 362, 463
BmiI	GGNNCC	2 cut(s)	9, 292
BmrFI	CCNGG	1 cut(s)	929
BmsI	GCATC	3 cut(s)	94, 287, 755
BpiI	GAAGAC	1 cut(s)	225
BpuEI	CTTGAG	3 cut(s)	158, 596, 877
BpuMI	CCSGG	1 cut(s)	929
Bsa29I	ATCGAT	1 cut(s)	645
BsaI	GGTCTC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 472
Bse1I	ACTGG	2 cut(s)	326, 393
Bse3DI	GCAATG	3 cut(s)	302, 501, 741
BseCI	ATCGAT	1 cut(s)	645
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	4 cut(s)	46, 385, 746, 937
BseLI	CCNNNNNNNGG	2 cut(s)	347, 472
BseMI	GCAATG	3 cut(s)	302, 501, 741
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	2 cut(s)	326, 393
BseRI	GAGGAG	1 cut(s)	962
BseXI	GCAGC	3 cut(s)	91, 847, 945
BsgI	GTGCAG	1 cut(s)	90
BshFI	GGCC	4 cut(s)	178, 392, 464, 542
BshVI	ATCGAT	1 cut(s)	645
BsiHKAI	GWGCWC	2 cut(s)	144, 612
BsiHKCI	CYCGRG	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	928
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	2 cut(s)	347, 472
BsmAI	GTCTC	1 cut(s)	36
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	4 cut(s)	178, 392, 464, 542
Bso31I	GGTCTC	1 cut(s)	36
BsoBI	CYCGRG	1 cut(s)	465
Bsp1286I	GDGCHC	2 cut(s)	144, 612
Bsp143I	GATC	4 cut(s)	495, 529, 642, 646
BspANI	GGCC	4 cut(s)	178, 392, 464, 542
BspCNI	CTCAG	1 cut(s)	137
BspDI	ATCGAT	1 cut(s)	645
BspHI	TCATGA	2 cut(s)	181, 384
BspLI	GGNNCC	2 cut(s)	9, 292
BspPI	GGATC	1 cut(s)	641
BspQI	GCTCTTC	1 cut(s)	825
BspTNI	GGTCTC	1 cut(s)	36
BsrDI	GCAATG	3 cut(s)	302, 501, 741
BsrI	ACTGG	2 cut(s)	326, 393
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	4 cut(s)	495, 529, 642, 646
BssSI	CACGAG	1 cut(s)	962
BssT1I	CCWWGG	1 cut(s)	294
Bst2BI	CACGAG	1 cut(s)	962
Bst4CI	ACNGT	2 cut(s)	629, 993
Bst6I	CTCTTC	1 cut(s)	825
BstC8I	GCNNGC	2 cut(s)	144, 608
BstDEI	CTNAG	1 cut(s)	124
BstF5I	GGATG	4 cut(s)	46, 385, 746, 937
BstHHI	GCGC	1 cut(s)	741
BstKTI	GATC	4 cut(s)	498, 532, 645, 649
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	4 cut(s)	495, 529, 642, 646
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 590
BstNSI	RCATGY	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	927
BstV1I	GCAGC	3 cut(s)	91, 847, 945
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	495
BstXI	CCANNNNNNTGG	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	495
Bsu15I	ATCGAT	1 cut(s)	645
BsuRI	GGCC	4 cut(s)	178, 392, 464, 542
BsuTUI	ATCGAT	1 cut(s)	645
BtsCI	GGATG	4 cut(s)	46, 385, 746, 937
BtsIMutI	CAGTG	1 cut(s)	400
Cac8I	GCNNGC	2 cut(s)	144, 608
CciI	TCATGA	2 cut(s)	181, 384
CfoI	GCGC	1 cut(s)	741
Cfr13I	GGNCC	4 cut(s)	8, 176, 362, 463
ClaI	ATCGAT	1 cut(s)	645
Csp6I	GTAC	4 cut(s)	156, 272, 696, 911
CviAII	CATG	4 cut(s)	167, 182, 223, 385
CviQI	GTAC	4 cut(s)	156, 272, 696, 911
DdeI	CTNAG	1 cut(s)	124
DpnI	GATC	4 cut(s)	497, 531, 644, 648
DpnII	GATC	4 cut(s)	495, 529, 642, 646
DrdI	GACNNNNNNGTC	1 cut(s)	878
DriI	GACNNNNNGTC	1 cut(s)	226
DseDI	GACNNNNNNGTC	1 cut(s)	878
Eam1104I	CTCTTC	1 cut(s)	825
Eam1105I	GACNNNNNGTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	825
Eco130I	CCWWGG	1 cut(s)	294
Eco147I	AGGCCT	1 cut(s)	542
Eco31I	GGTCTC	1 cut(s)	36
Eco32I	GATATC	1 cut(s)	511
Eco47I	GGWCC	2 cut(s)	8, 362
Eco88I	CYCGRG	1 cut(s)	465
EcoO109I	RGGNCCY	3 cut(s)	8, 176, 362
EcoRI	GAATTC	1 cut(s)	898
EcoRV	GATATC	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	4 cut(s)	170, 185, 226, 388
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	4 cut(s)	166, 181, 222, 384
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	3 cut(s)	105, 836, 959
FokI	GGATG	4 cut(s)	33, 392, 733, 944
Fsp4HI	GCNGC	3 cut(s)	105, 836, 959
FspBI	CTAG	2 cut(s)	287, 308
GlaI	GCGC	1 cut(s)	740
GluI	GCNGC	3 cut(s)	105, 836, 959
HaeIII	GGCC	4 cut(s)	178, 392, 464, 542
HapII	CCGG	1 cut(s)	928
HhaI	GCGC	1 cut(s)	741
Hin1II	CATG	4 cut(s)	170, 185, 226, 388
Hin6I	GCGC	1 cut(s)	739
HinP1I	GCGC	1 cut(s)	739
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	1 cut(s)	578
HpaI	GTTAAC	1 cut(s)	334
HpaII	CCGG	1 cut(s)	928
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	1 cut(s)	829
Hpy188III	TCNNGA	7 cut(s)	137, 182, 385, 613, 674, 964, 985
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	5 cut(s)	64, 382, 568, 682, 781
HpyCH4III	ACNGT	2 cut(s)	629, 993
HpyCH4V	TGCA	5 cut(s)	4, 85, 107, 370, 746
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 590
HpyF3I	CTNAG	1 cut(s)	124
Hsp92II	CATG	4 cut(s)	170, 185, 226, 388
HspAI	GCGC	1 cut(s)	739
Ksp22I	TGATCA	1 cut(s)	529
KspAI	GTTAAC	1 cut(s)	334
Kzo9I	GATC	4 cut(s)	495, 529, 642, 646
LguI	GCTCTTC	1 cut(s)	825
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	9 cut(s)	95, 116, 138, 339, 378, 406, 471, 783, 941
Lsp1109I	GCAGC	3 cut(s)	91, 847, 945
LweI	GCATC	3 cut(s)	94, 287, 755
MaeI	CTAG	2 cut(s)	287, 308
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	4 cut(s)	497, 531, 644, 648
MboI	GATC	4 cut(s)	495, 529, 642, 646
MboII	GAAGA	7 cut(s)	230, 490, 505, 583, 796, 842, 985
MflI	RGATCY	1 cut(s)	495
MhlI	GDGCHC	2 cut(s)	144, 612
MluCI	AATT	9 cut(s)	24, 533, 651, 702, 823, 864, 898, 922, 968
MnlI	CCTC	7 cut(s)	189, 253, 454, 556, 661, 723, 940
MroXI	GAANNNNTTC	2 cut(s)	497, 980
MseI	TTAA	4 cut(s)	333, 537, 807, 915
MslI	CAYNNNNRTG	1 cut(s)	90
MspI	CCGG	1 cut(s)	928
MspR9I	CCNGG	1 cut(s)	929
MwoI	GCNNNNNNNGC	2 cut(s)	158, 590
NciI	CCSGG	1 cut(s)	929
NdeII	GATC	4 cut(s)	495, 529, 642, 646
NlaIII	CATG	4 cut(s)	170, 185, 226, 388
NlaIV	GGNNCC	2 cut(s)	9, 292
NmuCI	GTSAC	1 cut(s)	451
NspI	RCATGY	1 cut(s)	170
PagI	TCATGA	2 cut(s)	181, 384
PceI	AGGCCT	1 cut(s)	542
PciI	ACATGT	1 cut(s)	166
PciSI	GCTCTTC	1 cut(s)	825
PdmI	GAANNNNTTC	2 cut(s)	497, 980
PfeI	GAWTC	1 cut(s)	578
PkrI	GCNGC	3 cut(s)	106, 837, 960
PpuMI	RGGWCCY	2 cut(s)	8, 362
PscI	ACATGT	1 cut(s)	166
Psp5II	RGGWCCY	2 cut(s)	8, 362
PspN4I	GGNNCC	2 cut(s)	9, 292
PspPI	GGNCC	4 cut(s)	8, 176, 362, 463
PspPPI	RGGWCCY	2 cut(s)	8, 362
PsuI	RGATCY	1 cut(s)	495
RsaI	GTAC	4 cut(s)	157, 273, 697, 912
RsaNI	GTAC	4 cut(s)	156, 272, 696, 911
RseI	CAYNNNNRTG	1 cut(s)	90
SapI	GCTCTTC	1 cut(s)	825
SaqAI	TTAA	4 cut(s)	333, 537, 807, 915
SatI	GCNGC	3 cut(s)	105, 836, 959
Sau3AI	GATC	4 cut(s)	495, 529, 642, 646
Sau96I	GGNCC	4 cut(s)	8, 176, 362, 463
ScrFI	CCNGG	1 cut(s)	929
SduI	GDGCHC	2 cut(s)	144, 612
SfaNI	GCATC	3 cut(s)	94, 287, 755
SinI	GGWCC	2 cut(s)	8, 362
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	3 cut(s)	137, 611, 892
SmoI	CTYRAG	3 cut(s)	137, 611, 892
Sse9I	AATT	9 cut(s)	24, 533, 651, 702, 823, 864, 898, 922, 968
SseBI	AGGCCT	1 cut(s)	542
SspMI	CTAG	2 cut(s)	287, 308
StuI	AGGCCT	1 cut(s)	542
StyD4I	CCNGG	1 cut(s)	927
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	629, 993
TaqI	TCGA	5 cut(s)	645, 675, 794, 902, 984
TaqII	GACCGA	1 cut(s)	18
TasI	AATT	9 cut(s)	24, 533, 651, 702, 823, 864, 898, 922, 968
TatI	WGTACW	1 cut(s)	910
TfiI	GAWTC	1 cut(s)	578
Tru1I	TTAA	4 cut(s)	333, 537, 807, 915
Tru9I	TTAA	4 cut(s)	333, 537, 807, 915
TscAI	CASTG	1 cut(s)	400
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	3 cut(s)	104, 835, 958
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	6 cut(s)	68, 239, 401, 490, 603, 948
TspGWI	ACGGA	1 cut(s)	591
TspRI	CASTG	1 cut(s)	400
VpaK11BI	GGWCC	2 cut(s)	8, 362
XapI	RAATTY	2 cut(s)	823, 898
XceI	RCATGY	1 cut(s)	170
XmnI	GAANNNNTTC	2 cut(s)	497, 980
XspI	CTAG	2 cut(s)	287, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.