Rmu_sc0003637.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003637.1
OG0002582
Physical Location & Seq
Reverse (-)
41627 .. 42121
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003637.1_g000012.1.cds

Sequence Viewer

Length: 495 bp
atggaaagcaacagggacaagaaggccggcgagaagaaagaaaagaagacgatggaggcgaaaaagaaagtgccaaagcatgtgagggcaatgcaggaggcactggcgaagcgaaaggaagaggaagagaggcagagaagtgaggaagaggagagactgaggagagaagaagaggagaggctgaggagacaagaggttgagagggaagcagaggaggccaggattaggagaaaggaaaagaaaaaggagatcatagagcacaagagaagggaaggcattcctgtaactgccaagcagaaacaagaagcagacaagttagagaggtatcgaaaacagataggggttccacctcctgttcctgccactgaggaggagaatgatcacaaagggccttacaaaagacccatgtatcatcacaagaacaagtgtatgaggcactggcgaagcgaaaggaagaggaagagaggcagagaagtgaggaagaggagagactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

20.28

Weight (kDa)

10.12

Isoelectric Point (pI)

102.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 225
AjnI CCWGG 1 cut(s) 218
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 3 cut(s) 148, 181, 483
AoxI GGCC 3 cut(s) 24, 216, 389
Asp700I GAANNNNTTC 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 389
BaeI ACNNNNGTAYC 2 cut(s) 392, 425
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 261
BbvCI CCTCAGC 1 cut(s) 182
BccI CCATC 1 cut(s) 46
BciT130I CCWGG 1 cut(s) 220
BclI TGATCA 1 cut(s) 379
BcoDI GTCTC 3 cut(s) 148, 181, 483
Bme1390I CCNGG 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 389
BmiI GGNNCC 1 cut(s) 345
BmrFI CCNGG 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 182
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 2 cut(s) 108, 443
Bse3DI GCAATG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 220
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 3 cut(s) 149, 173, 357
BseNI ACTGG 2 cut(s) 108, 443
BseRI GAGGAG 7 cut(s) 164, 175, 188, 199, 227, 383, 386
BshFI GGCC 3 cut(s) 26, 218, 391
BsiHKAI GWGCWC 1 cut(s) 261
BsiSI CCGG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 3 cut(s) 148, 181, 483
BsmFI GGGAC 1 cut(s) 29
BsmI GAATGC 1 cut(s) 276
BsnI GGCC 3 cut(s) 26, 218, 391
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 2 cut(s) 249, 379
BspANI GGCC 3 cut(s) 26, 218, 391
BspCNI CTCAG 3 cut(s) 150, 174, 358
BspLI GGNNCC 1 cut(s) 345
BsrDI GCAATG 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 2 cut(s) 108, 443
BssAI RCCGGY 1 cut(s) 26
BssMI GATC 2 cut(s) 249, 379
Bst2UI CCWGG 1 cut(s) 220
Bst6I CTCTTC 7 cut(s) 114, 120, 141, 165, 449, 455, 476
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 3 cut(s) 158, 182, 366
BstKTI GATC 2 cut(s) 252, 382
BstMAI GTCTC 3 cut(s) 148, 181, 483
BstMBI GATC 2 cut(s) 249, 379
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNI CCWGG 1 cut(s) 220
BstNSI RCATGY 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 218
BstV2I GAAGAC 1 cut(s) 53
BsuRI GGCC 3 cut(s) 26, 218, 391
BtsIMutI CAGTG 3 cut(s) 101, 363, 436
Cac8I GCNNGC 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 389
CviAII CATG 2 cut(s) 80, 406
CviJI RGCY 4 cut(s) 26, 181, 218, 391
CviKI_1 RGCY 4 cut(s) 26, 181, 218, 391
DdeI CTNAG 3 cut(s) 158, 182, 366
DpnI GATC 2 cut(s) 251, 381
DpnII GATC 2 cut(s) 249, 379
Eam1104I CTCTTC 7 cut(s) 114, 120, 141, 165, 449, 455, 476
EarI CTCTTC 7 cut(s) 114, 120, 141, 165, 449, 455, 476
EcoO109I RGGNCCY 1 cut(s) 389
EcoRII CCWGG 1 cut(s) 218
FaeI CATG 2 cut(s) 83, 409
FaiI YATR 4 cut(s) 81, 254, 407, 431
FaqI GGGAC 1 cut(s) 29
FatI CATG 2 cut(s) 79, 405
FbaI TGATCA 1 cut(s) 379
HaeIII GGCC 3 cut(s) 26, 218, 391
HapII CCGG 1 cut(s) 27
Hin1II CATG 2 cut(s) 83, 409
HpaII CCGG 1 cut(s) 27
HpyAV CCTTC 3 cut(s) 16, 261, 266
HpyCH4V TGCA 1 cut(s) 94
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 3 cut(s) 158, 182, 366
Hsp92II CATG 2 cut(s) 83, 409
KroI GCCGGC 1 cut(s) 26
KroNI GCCGGC 1 cut(s) 28
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 2 cut(s) 249, 379
LpnPI CCDG 9 cut(s) 40, 80, 89, 205, 232, 294, 366, 372, 424
MaeIII GTNAC 1 cut(s) 283
MalI GATC 2 cut(s) 251, 381
MboI GATC 2 cut(s) 249, 379
MhlI GDGCHC 1 cut(s) 261
MroNI GCCGGC 1 cut(s) 26
MroXI GAANNNNTTC 1 cut(s) 276
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 220
Mva1269I GAATGC 1 cut(s) 276
MvaI CCWGG 1 cut(s) 220
MwoI GCNNNNNNNGC 1 cut(s) 215
NaeI GCCGGC 1 cut(s) 28
NdeII GATC 2 cut(s) 249, 379
NgoMIV GCCGGC 1 cut(s) 26
NlaIII CATG 2 cut(s) 83, 409
NlaIV GGNNCC 1 cut(s) 345
NspI RCATGY 1 cut(s) 83
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PctI GAATGC 1 cut(s) 276
PdiI GCCGGC 1 cut(s) 28
PdmI GAANNNNTTC 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 218
PspGI CCWGG 1 cut(s) 218
PspN4I GGNNCC 1 cut(s) 345
PspPI GGNCC 1 cut(s) 389
Sau3AI GATC 2 cut(s) 249, 379
Sau96I GGNCC 1 cut(s) 389
ScrFI CCNGG 1 cut(s) 220
SduI GDGCHC 1 cut(s) 261
SetI ASST 3 cut(s) 198, 326, 352
StyD4I CCNGG 1 cut(s) 218
TaqI TCGA 1 cut(s) 328
TscAI CASTG 3 cut(s) 108, 370, 443
TspRI CASTG 3 cut(s) 108, 370, 443
XceI RCATGY 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.