AT2G31170

DALR_2

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
13282355 .. 13285678
3324 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G31170.2

Sequence Viewer

Length: 1692 bp
ATGGCTTCTTCTGTCCTTAATCTCTTCAAATCATGTAGACCCTTCACTCCAATACGCTTCTCTTCTCTTCCCAAGTCTCAATTCAGAATCCAATTTCCCCTCAGACCCGGAAAAGAAACTCAACTACGTCGCTGTTTCACGACTCTGTCATCATTAACGGACGGTGGAGCACCAATTTCCGGTGGGAAGGAGCTGTGGCTGCACAACACGATGAGCCGGAAGAAGGAGCTGTTTAAGCCTAAGGTCGAAGGTAAAGTTGGAATGTACGTTTGCGGTGTCACTGCTTACGATCTCAGTCACATTGGACACGCACGAGTCTACGTCACTTTCGATGTACTCTTGAGGTACCTTAAGCATCTAGGATATGAAGTGTCTTACGTTCGAAATTTCACGGATGTGGATGACAAGATTATTGCCAGAGCGAAAGAATTAGAGGAAGATCCAATCAGTTTGAGCAGACGTTTCTGTGAGGAATTTAATCGAGATATGGAACAGCTTCAATGTTTAGATCCGTCTGTCCAACCACGAGTTTCAGATCATATACCTCAAATCATCGACCTGATCAAGCAGATTCTTGATAATGGCTATGCCTACAAAGTTGATGGAGACATTTACTTCTCAGTCGACAAATTTCCAACATATGGAAAATTGTCTGGGCGAAAATTAGAAGATAACCGTGCAGGTGAGAGAGTCGCAGTTGACACGAGGAAGAAACATCCCGCAGATTTTGCTCTGTGGAAAGCTGCAAAAGAAGGGGAACCCTTTTGGGAGAGTCCGTGGGGAAGAGGAAGGCCCGGTTGGCACATAGAGTGCAGTGCGATGAGCGCGGCTTATCTCGGTTATAGTTTTGACATACATGGTGGCGGAATGGATCTTGTGTTCCCTCACCATGAAAATGAAATTGCTCAGAGTTGTGCTGCATGTGATAGCAGCAACATTAGCTATTGGATCCATAATGGTTTTGTTACTGTTGACTCCGAGAAGATGTCAAAATCCTTGGGGAATTTCTTCACTATCAGACAGGTTATAGACCTTTATCATCCTCTTGCTCTGAGACTTTTCCTAATGGGAACTCATTATCGGTCTCCTATCAATTACTCCGATTTCCTCCTCGAGAGTGCTTCGGAGCGCATTTTTTATATTTATCAGACGTTACACGACTGTGAAAGCGCTTTAGGCGAGAAAGATTCGACATTTGAGAATGGTTCTGTTCCTTCAGACACTTTGACAAGCATCAACACATTCCGTACTGAATTTGTCGCCTCGATGTCTGATGATCTTCTCACACCTGTAACTCTGGCTGCAATGTCAGAACCACTGAAAACTATCAACGATCTCATTCACACCCGAAAGGGGAAAAAACAAGCAAGAAGAGAAGAGTCACTTAAGGCTCTAGAGACAACAATCAGAGATGTTCTTACTATCTTAGGGCTTATGCCCACAAGTTACTCAGAGGTTCTCGAGCAGCTAAAAGAGAAGGCACTAAAGCGAGCTGGACTAAAAGAGGAAGATGTGTTGCAGAGAGTGCAAGAGAGAACAGACGCAAGGAAGAATAAAGAATACGAAAGATCTGATGCAATTAGGAAAGATTTGGCAAAAGTTGGGATCGCTTTGATGGATAGTCCTGAGGGAACAACTTGGAGACCAGCCATTCCTCTTGCACTTCAAGAACCTGTAACTACTACACCTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

563

Amino Acids

63.91

Weight (kDa)

6.75

Isoelectric Point (pI)

51.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1e PF01406 1 - 213 1.2e-93 tRNA synthetases class I (C) catalytic domain
CysS_C PF23493 348 - 386 5.5e-06 Cysteinyl-tRNA ligase anticodon binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 671
Acc36I ACCTGC 1 cut(s) 671
Acc65I GGTACC 1 cut(s) 345
AccB1I GGYRCC 1 cut(s) 345
AccB7I CCANNNNNTGG 1 cut(s) 641
AccI GTMKAC 3 cut(s) 37, 318, 624
AccII CGCG 1 cut(s) 827
AciI CCGC 4 cut(s) 273, 720, 827, 864
AclWI GGATC 6 cut(s) 434, 503, 879, 943, 956, 1613
AcsI RAATTY 5 cut(s) 385, 473, 629, 1003, 1253
AcuI CTGAAG 1 cut(s) 1200
AfaI GTAC 4 cut(s) 266, 336, 347, 1249
AfeI AGCGCT 1 cut(s) 1171
AfiI CCNNNNNNNGG 4 cut(s) 179, 223, 641, 1353
AflII CTTAAG 2 cut(s) 350, 1385
AgsI TTSAA 3 cut(s) 28, 500, 1667
AjuI GAANNNNNNNTTGG 6 cut(s) 65, 97, 240, 272, 781, 813
AleI CACNNNNGTG 2 cut(s) 395, 1161
AloI GAACNNNNNNTCC 2 cut(s) 863, 895
AluBI AGCT 7 cut(s) 193, 229, 496, 743, 942, 1468, 1493
AluI AGCT 7 cut(s) 193, 229, 496, 743, 942, 1468, 1493
Alw21I GWGCWC 1 cut(s) 172
Alw26I GTCTC 6 cut(s) 81, 600, 1048, 1089, 1391, 1636
AlwI GGATC 6 cut(s) 434, 503, 879, 943, 956, 1613
Ama87I CYCGRG 2 cut(s) 1112, 1460
Aor51HI AGCGCT 1 cut(s) 1171
AoxI GGCC 1 cut(s) 791
ApeKI GCWGC 6 cut(s) 199, 743, 917, 930, 1301, 1465
ApoI RAATTY 5 cut(s) 385, 473, 629, 1003, 1253
Asp700I GAANNNNTTC 2 cut(s) 495, 1007
Asp718I GGTACC 1 cut(s) 345
AspLEI GCGC 3 cut(s) 827, 1131, 1172
AspS9I GGNCC 1 cut(s) 792
AsuC2I CCSGG 2 cut(s) 108, 795
AsuHPI GGTGA 2 cut(s) 695, 878
AsuII TTCGAA 1 cut(s) 382
AvaI CYCGRG 2 cut(s) 1112, 1460
AxyI CCTNAGG 2 cut(s) 240, 1626
BamHI GGATCC 1 cut(s) 948
BanI GGYRCC 1 cut(s) 345
BauI CACGAG 3 cut(s) 312, 525, 703
Bbv12I GWGCWC 1 cut(s) 172
BbvI GCAGC 6 cut(s) 186, 730, 904, 942, 1288, 1477
BccI CCATC 2 cut(s) 596, 1609
BclI TGATCA 1 cut(s) 561
BcnI CCSGG 2 cut(s) 108, 795
BcoDI GTCTC 6 cut(s) 81, 600, 1048, 1089, 1391, 1636
BfaI CTAG 2 cut(s) 359, 1394
BfoI RGCGCY 1 cut(s) 1173
BfrI CTTAAG 2 cut(s) 350, 1385
BfuAI ACCTGC 1 cut(s) 671
BglI GCCNNNNNGGC 1 cut(s) 799
BglII AGATCT 1 cut(s) 1568
BisI GCNGC 7 cut(s) 200, 744, 828, 918, 931, 1302, 1466
BlsI GCNGC 7 cut(s) 201, 745, 829, 919, 932, 1303, 1467
Bme1390I CCNGG 2 cut(s) 108, 795
BmeT110I CYCGRG 2 cut(s) 1112, 1460
BmgT120I GGNCC 1 cut(s) 792
BmiI GGNNCC 3 cut(s) 347, 759, 950
BmrFI CCNGG 2 cut(s) 108, 795
BmsI GCATC 3 cut(s) 364, 1242, 1564
Bpu14I TTCGAA 1 cut(s) 382
BpuEI CTTGAG 1 cut(s) 361
BpuMI CCSGG 2 cut(s) 108, 795
BsaI GGTCTC 2 cut(s) 1089, 1636
BsaJI CCNNGG 2 cut(s) 776, 996
BsaWI WCCGGW 1 cut(s) 179
BsaXI ACNNNNNCTCC 2 cut(s) 761, 791
Bsc4I CCNNNNNNNGG 4 cut(s) 179, 223, 641, 1353
Bse21I CCTNAGG 2 cut(s) 240, 1626
Bse3DI GCAATG 1 cut(s) 1311
BseDI CCNNGG 2 cut(s) 776, 996
BseGI GGATG 4 cut(s) 400, 406, 715, 1039
BseLI CCNNNNNNNGG 4 cut(s) 179, 223, 641, 1353
BseMI GCAATG 1 cut(s) 1311
BseMII CTCAG 7 cut(s) 115, 307, 633, 920, 1043, 1464, 1617
BseRI GAGGAG 1 cut(s) 1100
BseXI GCAGC 6 cut(s) 186, 730, 904, 942, 1288, 1477
BsgI GTGCAG 3 cut(s) 185, 699, 832
Bsh1236I CGCG 1 cut(s) 827
BshFI GGCC 1 cut(s) 793
BshNI GGYRCC 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 172
BsiHKCI CYCGRG 2 cut(s) 1112, 1460
BsiSI CCGG 4 cut(s) 108, 180, 217, 795
BslI CCNNNNNNNGG 4 cut(s) 179, 223, 641, 1353
BsmAI GTCTC 6 cut(s) 81, 600, 1048, 1089, 1391, 1636
BsnI GGCC 1 cut(s) 793
Bso31I GGTCTC 2 cut(s) 1089, 1636
BsoBI CYCGRG 2 cut(s) 1112, 1460
Bsp119I TTCGAA 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 172
BspACI CCGC 4 cut(s) 273, 720, 827, 864
BspANI GGCC 1 cut(s) 793
BspCNI CTCAG 7 cut(s) 114, 306, 632, 919, 1044, 1463, 1618
BspFNI CGCG 1 cut(s) 827
BspLI GGNNCC 3 cut(s) 347, 759, 950
BspMI ACCTGC 1 cut(s) 671
BspPI GGATC 6 cut(s) 434, 503, 879, 943, 956, 1613
BspT104I TTCGAA 1 cut(s) 382
BspT107I GGYRCC 1 cut(s) 345
BspTI CTTAAG 2 cut(s) 350, 1385
BspTNI GGTCTC 2 cut(s) 1089, 1636
BsrDI GCAATG 1 cut(s) 1311
BssECI CCNNGG 2 cut(s) 776, 996
BssSI CACGAG 3 cut(s) 312, 525, 703
BssT1I CCWWGG 1 cut(s) 996
Bst2BI CACGAG 3 cut(s) 312, 525, 703
Bst4CI ACNGT 4 cut(s) 164, 677, 970, 1163
Bst6I CTCTTC 6 cut(s) 29, 67, 72, 778, 1366, 1371
BstAFI CTTAAG 2 cut(s) 350, 1385
BstAPI GCANNNNNTGC 2 cut(s) 728, 1525
BstBI TTCGAA 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 1491
BstDEI CTNAG 9 cut(s) 101, 240, 293, 619, 906, 1052, 1426, 1450, 1626
BstDSI CCRYGG 1 cut(s) 776
BstF5I GGATG 4 cut(s) 400, 406, 715, 1039
BstFNI CGCG 1 cut(s) 827
BstH2I RGCGCY 1 cut(s) 1173
BstHHI GCGC 3 cut(s) 827, 1131, 1172
BstMAI GTCTC 6 cut(s) 81, 600, 1048, 1089, 1391, 1636
BstMWI GCNNNNNNNGC 8 cut(s) 199, 235, 728, 799, 824, 939, 1176, 1525
BstNSI RCATGY 1 cut(s) 924
BstSCI CCNGG 2 cut(s) 106, 793
BstUI CGCG 1 cut(s) 827
BstV1I GCAGC 6 cut(s) 186, 730, 904, 942, 1288, 1477
BstX2I RGATCY 5 cut(s) 439, 508, 871, 948, 1568
BstYI RGATCY 5 cut(s) 439, 508, 871, 948, 1568
Bsu36I CCTNAGG 2 cut(s) 240, 1626
BsuRI GGCC 1 cut(s) 793
BtgI CCRYGG 1 cut(s) 776
BtgZI GCGATG 1 cut(s) 833
BtsCI GGATG 4 cut(s) 400, 406, 715, 1039
BtsI GCAGTG 2 cut(s) 279, 820
BtsIMutI CAGTG 3 cut(s) 279, 820, 1316
BveI ACCTGC 1 cut(s) 671
Cac8I GCNNGC 1 cut(s) 1491
CfoI GCGC 3 cut(s) 827, 1131, 1172
Cfr13I GGNCC 1 cut(s) 792
CseI GACGC 1 cut(s) 1550
Csp6I GTAC 4 cut(s) 265, 335, 346, 1248
CviAII CATG 4 cut(s) 33, 857, 890, 921
CviQI GTAC 4 cut(s) 265, 335, 346, 1248
DdeI CTNAG 9 cut(s) 101, 240, 293, 619, 906, 1052, 1426, 1450, 1626
Eam1104I CTCTTC 6 cut(s) 29, 67, 72, 778, 1366, 1371
EarI CTCTTC 6 cut(s) 29, 67, 72, 778, 1366, 1371
EciI GGCGGA 1 cut(s) 879
Eco130I CCWWGG 1 cut(s) 996
Eco31I GGTCTC 2 cut(s) 1089, 1636
Eco47III AGCGCT 1 cut(s) 1171
Eco57I CTGAAG 1 cut(s) 1200
Eco81I CCTNAGG 2 cut(s) 240, 1626
Eco88I CYCGRG 2 cut(s) 1112, 1460
EcoT14I CCWWGG 1 cut(s) 996
ErhI CCWWGG 1 cut(s) 996
FaeI CATG 4 cut(s) 36, 860, 893, 924
FalI AAGNNNNNCTT 2 cut(s) 1368, 1400
FatI CATG 4 cut(s) 32, 856, 889, 920
FauI CCCGC 1 cut(s) 727
FauNDI CATATG 1 cut(s) 640
FbaI TGATCA 1 cut(s) 561
FblI GTMKAC 3 cut(s) 37, 318, 624
Fnu4HI GCNGC 7 cut(s) 200, 744, 828, 918, 931, 1302, 1466
FokI GGATG 4 cut(s) 407, 413, 702, 1026
Fsp4HI GCNGC 7 cut(s) 200, 744, 828, 918, 931, 1302, 1466
FspBI CTAG 2 cut(s) 359, 1394
GlaI GCGC 3 cut(s) 826, 1130, 1171
GluI GCNGC 7 cut(s) 200, 744, 828, 918, 931, 1302, 1466
HaeII RGCGCY 1 cut(s) 1173
HaeIII GGCC 1 cut(s) 793
HapII CCGG 4 cut(s) 108, 180, 217, 795
HgaI GACGC 1 cut(s) 1550
HhaI GCGC 3 cut(s) 827, 1131, 1172
Hin1II CATG 4 cut(s) 36, 860, 893, 924
Hin6I GCGC 3 cut(s) 825, 1129, 1170
HinP1I GCGC 3 cut(s) 825, 1129, 1170
HincII GTYRAC 3 cut(s) 625, 700, 973
HindII GTYRAC 3 cut(s) 625, 700, 973
HinfI GANTC 9 cut(s) 87, 142, 315, 571, 690, 772, 974, 1187, 1379
HpaII CCGG 4 cut(s) 108, 180, 217, 795
HphI GGTGA 2 cut(s) 695, 878
Hpy166II GTNNAC 5 cut(s) 38, 319, 625, 700, 973
Hpy188III TCNNGA 9 cut(s) 139, 340, 482, 575, 1114, 1394, 1460, 1625, 1667
Hpy8I GTNNAC 5 cut(s) 38, 319, 625, 700, 973
Hpy99I CGWCG 1 cut(s) 132
HpyAV CCTTC 8 cut(s) 52, 181, 217, 242, 746, 783, 1224, 1471
HpyCH4III ACNGT 4 cut(s) 164, 677, 970, 1163
HpyCH4IV ACGT 6 cut(s) 127, 267, 321, 378, 460, 1151
HpyF10VI GCNNNNNNNGC 8 cut(s) 199, 235, 728, 799, 824, 939, 1176, 1525
HpyF3I CTNAG 9 cut(s) 101, 240, 293, 619, 906, 1052, 1426, 1450, 1626
HpySE526I ACGT 6 cut(s) 127, 267, 321, 378, 460, 1151
Hsp92II CATG 4 cut(s) 36, 860, 893, 924
HspAI GCGC 3 cut(s) 825, 1129, 1170
KpnI GGTACC 1 cut(s) 349
Ksp22I TGATCA 1 cut(s) 561
LmnI GCTCC 4 cut(s) 167, 190, 226, 1126
Lsp1109I GCAGC 6 cut(s) 186, 730, 904, 942, 1288, 1477
LweI GCATC 3 cut(s) 364, 1242, 1564
MaeI CTAG 2 cut(s) 359, 1394
MaeII ACGT 6 cut(s) 127, 267, 321, 378, 460, 1151
MaeIII GTNAC 9 cut(s) 277, 296, 322, 964, 1152, 1291, 1380, 1445, 1675
MflI RGATCY 5 cut(s) 439, 508, 871, 948, 1568
MhlI GDGCHC 1 cut(s) 172
MlyI GAGTC 6 cut(s) 136, 324, 699, 781, 968, 1388
MmeI TCCRAC 3 cut(s) 238, 544, 659
MroXI GAANNNNTTC 2 cut(s) 495, 1007
MseI TTAA 6 cut(s) 18, 155, 234, 351, 477, 1386
MslI CAYNNNNRTG 3 cut(s) 395, 894, 1161
MspCI CTTAAG 2 cut(s) 350, 1385
MspI CCGG 4 cut(s) 108, 180, 217, 795
MspR9I CCNGG 2 cut(s) 108, 795
MvnI CGCG 1 cut(s) 827
MwoI GCNNNNNNNGC 8 cut(s) 199, 235, 728, 799, 824, 939, 1176, 1525
NciI CCSGG 2 cut(s) 108, 795
NdeI CATATG 1 cut(s) 640
NlaIII CATG 4 cut(s) 36, 860, 893, 924
NlaIV GGNNCC 3 cut(s) 347, 759, 950
NmuCI GTSAC 4 cut(s) 277, 296, 322, 1380
NspI RCATGY 1 cut(s) 924
NspV TTCGAA 1 cut(s) 382
OliI CACNNNNGTG 2 cut(s) 395, 1161
PaeR7I CTCGAG 2 cut(s) 1112, 1460
PaqCI CACCTGC 1 cut(s) 671
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PdmI GAANNNNTTC 2 cut(s) 495, 1007
PfeI GAWTC 3 cut(s) 87, 571, 1187
PflFI GACNNNGTC 1 cut(s) 145
PflMI CCANNNNNTGG 1 cut(s) 641
PkrI GCNGC 7 cut(s) 201, 745, 829, 919, 932, 1303, 1467
PleI GAGTC 6 cut(s) 136, 323, 698, 780, 968, 1387
PpsI GAGTC 6 cut(s) 136, 323, 698, 780, 968, 1387
PspN4I GGNNCC 3 cut(s) 347, 759, 950
PspPI GGNCC 1 cut(s) 792
PsuI RGATCY 5 cut(s) 439, 508, 871, 948, 1568
PsyI GACNNNGTC 1 cut(s) 145
RsaI GTAC 4 cut(s) 266, 336, 347, 1249
RsaNI GTAC 4 cut(s) 265, 335, 346, 1248
RseI CAYNNNNRTG 3 cut(s) 395, 894, 1161
SalI GTCGAC 1 cut(s) 623
SaqAI TTAA 6 cut(s) 18, 155, 234, 351, 477, 1386
SatI GCNGC 7 cut(s) 200, 744, 828, 918, 931, 1302, 1466
Sau96I GGNCC 1 cut(s) 792
SchI GAGTC 6 cut(s) 136, 324, 699, 781, 968, 1388
ScrFI CCNGG 2 cut(s) 108, 795
SduI GDGCHC 1 cut(s) 172
SfaNI GCATC 3 cut(s) 364, 1242, 1564
Sfr274I CTCGAG 2 cut(s) 1112, 1460
SfuI TTCGAA 1 cut(s) 382
SlaI CTCGAG 2 cut(s) 1112, 1460
SmiMI CAYNNNNRTG 3 cut(s) 395, 894, 1161
SmlI CTYRAG 5 cut(s) 340, 350, 1112, 1385, 1460
SmoI CTYRAG 5 cut(s) 340, 350, 1112, 1385, 1460
SsiI CCGC 4 cut(s) 273, 720, 827, 864
SspMI CTAG 2 cut(s) 359, 1394
StyD4I CCNGG 2 cut(s) 106, 793
StyI CCWWGG 1 cut(s) 996
TaaI ACNGT 4 cut(s) 164, 677, 970, 1163
TaiI ACGT 6 cut(s) 130, 270, 324, 381, 463, 1154
TaqII GACCGA 1 cut(s) 1071
TatI WGTACW 1 cut(s) 334
TauI GCSGC 1 cut(s) 830
TfiI GAWTC 3 cut(s) 87, 571, 1187
Tru1I TTAA 6 cut(s) 18, 155, 234, 351, 477, 1386
Tru9I TTAA 6 cut(s) 18, 155, 234, 351, 477, 1386
TscAI CASTG 3 cut(s) 286, 820, 1323
TseFI GTSAC 4 cut(s) 277, 296, 322, 1380
TseI GCWGC 6 cut(s) 199, 743, 917, 930, 1301, 1465
Tsp45I GTSAC 4 cut(s) 277, 296, 322, 1380
TspDTI ATGAA 3 cut(s) 381, 906, 912
TspGWI ACGGA 5 cut(s) 173, 407, 501, 765, 1235
TspRI CASTG 3 cut(s) 286, 820, 1323
Tth111I GACNNNGTC 1 cut(s) 145
Van91I CCANNNNNTGG 1 cut(s) 641
Vha464I CTTAAG 2 cut(s) 350, 1385
XapI RAATTY 5 cut(s) 385, 473, 629, 1003, 1253
XbaI TCTAGA 1 cut(s) 1393
XceI RCATGY 1 cut(s) 924
XhoI CTCGAG 2 cut(s) 1112, 1460
XmiI GTMKAC 3 cut(s) 37, 318, 624
XmnI GAANNNNTTC 2 cut(s) 495, 1007
XspI CTAG 2 cut(s) 359, 1394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.